RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 LBRQ14739 615 aaKnown RBP9.37□□□□□ -0.91
LIMA1-210ENST00000552045 PEAR1Q5VY43 1037 aaPredicted RBP9.37□□□□□ -0.91
LIMA1-210ENST00000552045 OR13H1Q8NG92 308 aa9.37□□□□□ -0.91
LIMA1-210ENST00000552045 GSX2Q9BZM3 304 aa9.37□□□□□ -0.91
LIMA1-210ENST00000552045 DNMT3LQ9UJW3 386 aa9.37□□□□□ -0.91
LIMA1-210ENST00000552045 TTF2Q9UNY4 1162 aaKnown RBP9.37□□□□□ -0.91
LIMA1-210ENST00000552045 EFSO43281 561 aa9.36□□□□□ -0.91
LIMA1-210ENST00000552045 MMP20O60882 483 aa9.36□□□□□ -0.91
LIMA1-210ENST00000552045 FAM157BP0CG42 384 aa9.36□□□□□ -0.91
LIMA1-210ENST00000552045 RBL2Q08999 1139 aa9.36□□□□□ -0.91
LIMA1-210ENST00000552045 KRT25Q7Z3Z0 450 aa9.36□□□□□ -0.91
LIMA1-210ENST00000552045 MCF2L2Q86YR7 1114 aa9.36□□□□□ -0.91
LIMA1-210ENST00000552045 ZFP42Q96MM3 310 aa9.36□□□□□ -0.91
LIMA1-210ENST00000552045 RSRP1Q9BUV0 290 aa9.36□□□□□ -0.91
LIMA1-210ENST00000552045 KBTBD4Q9NVX7 518 aa9.36□□□□□ -0.91
LIMA1-210ENST00000552045 SALL4Q9UJQ4 1053 aa9.36□□□□□ -0.91
LIMA1-210ENST00000552045 PHF20L1A8MW92 1017 aa9.35□□□□□ -0.91
LIMA1-210ENST00000552045 ATXN7O15265 892 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-210ENST00000552045 HMGB1P09429 215 aaKnown RBP9.35□□□□□ -0.91
LIMA1-210ENST00000552045 FGRP09769 529 aa9.35□□□□□ -0.91
LIMA1-210ENST00000552045 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.35□□□□□ -0.91
LIMA1-210ENST00000552045 PRPF40BQ6NWY9 871 aaKnown RBP9.35□□□□□ -0.91
LIMA1-210ENST00000552045 FIGNL1Q6PIW4 674 aa9.35□□□□□ -0.91
LIMA1-210ENST00000552045 GPRASP2Q96D09 838 aa9.35□□□□□ -0.91
LIMA1-210ENST00000552045 ATP13A2Q9NQ11 1180 aa9.35□□□□□ -0.91
LIMA1-210ENST00000552045 CADPSQ9ULU8 1353 aa9.35□□□□□ -0.91
LIMA1-210ENST00000552045 SENP3-EIF4A1A0A087X0R7 540 aa9.34□□□□□ -0.91
LIMA1-210ENST00000552045 ATF4P18848 351 aaPredicted RBP9.34□□□□□ -0.91
LIMA1-210ENST00000552045 FCGRTP55899 365 aa9.34□□□□□ -0.91
LIMA1-210ENST00000552045 GIMAP6Q6P9H5 292 aa9.34□□□□□ -0.91
LIMA1-210ENST00000552045 THBS1P07996 1170 aa9.33□□□□□ -0.92
LIMA1-210ENST00000552045 RARAP10276 462 aa9.33□□□□□ -0.92
LIMA1-210ENST00000552045 XRCC5P13010 732 aaKnown RBP9.33□□□□□ -0.92
LIMA1-210ENST00000552045 HSP90B1P14625 803 aaKnown RBP9.33□□□□□ -0.92
LIMA1-210ENST00000552045 MAP3K10Q02779 954 aa9.33□□□□□ -0.92
LIMA1-210ENST00000552045 NOP9Q86U38 636 aaKnown RBP9.33□□□□□ -0.92
LIMA1-210ENST00000552045 ANKRD24Q8TF21 1146 aa9.33□□□□□ -0.92
LIMA1-210ENST00000552045 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.33□□□□□ -0.92
LIMA1-210ENST00000552045 HIRIP3Q9BW71 556 aaPredicted RBP9.33□□□□□ -0.92
LIMA1-210ENST00000552045 OXCT2Q9BYC2 517 aaPredicted RBP9.33□□□□□ -0.92
LIMA1-210ENST00000552045 LIN7BQ9HAP6 207 aa9.33□□□□□ -0.92
LIMA1-210ENST00000552045 ABCB6Q9NP58 842 aa9.33□□□□□ -0.92
LIMA1-210ENST00000552045 ZFATQ9P243 1243 aa9.33□□□□□ -0.92
LIMA1-210ENST00000552045 PPM1HQ9ULR3 514 aa9.33□□□□□ -0.92
LIMA1-210ENST00000552045 PCDHGC4Q9Y5F7 938 aa9.33□□□□□ -0.92
LIMA1-210ENST00000552045 TMEM238LA0A1B0GVL6 79 aa9.32□□□□□ -0.92
LIMA1-210ENST00000552045 LCE2BO14633 110 aa9.32□□□□□ -0.92
LIMA1-210ENST00000552045 KHNYNO15037 678 aaKnown RBP9.32□□□□□ -0.92
LIMA1-210ENST00000552045 PWP1Q13610 501 aa9.32□□□□□ -0.92
LIMA1-210ENST00000552045 CCDC85BQ15834 202 aaPredicted RBP9.32□□□□□ -0.92
LIMA1-210ENST00000552045 RELL1Q8IUW5 271 aa9.32□□□□□ -0.92
LIMA1-210ENST00000552045 RASGRP4Q8TDF6 673 aa9.32□□□□□ -0.92
LIMA1-210ENST00000552045 TCF12Q99081 682 aa9.32□□□□□ -0.92
LIMA1-210ENST00000552045 SPON2Q9BUD6 331 aa9.32□□□□□ -0.92
LIMA1-210ENST00000552045 DACH1Q9UI36 760 aa9.32□□□□□ -0.92
LIMA1-210ENST00000552045 DCDC2BA2VCK2 349 aa9.31□□□□□ -0.92
LIMA1-210ENST00000552045 KIF4AO95239 1232 aa9.31□□□□□ -0.92
LIMA1-210ENST00000552045 TNP2Q05952 138 aa9.31□□□□□ -0.92
LIMA1-210ENST00000552045 LAMC2Q13753 1193 aa9.31□□□□□ -0.92
LIMA1-210ENST00000552045 UBAP2LQ14157 1087 aaKnown RBP9.31□□□□□ -0.92
LIMA1-210ENST00000552045 CCDC144BQ3MJ40 725 aa9.31□□□□□ -0.92
LIMA1-210ENST00000552045 SOGA3Q5TF21 947 aa9.31□□□□□ -0.92
LIMA1-210ENST00000552045 DTHD1Q6ZMT9 781 aa9.31□□□□□ -0.92
LIMA1-210ENST00000552045 PMFBP1Q8TBY8 1022 aa9.31□□□□□ -0.92
LIMA1-210ENST00000552045 PNMA5Q96PV4 448 aa9.31□□□□□ -0.92
LIMA1-210ENST00000552045 TRIM56Q9BRZ2 755 aaKnown RBP9.31□□□□□ -0.92
LIMA1-210ENST00000552045 STRN4Q9NRL3 753 aa9.31□□□□□ -0.92
LIMA1-210ENST00000552045 STK10O94804 968 aaKnown RBP9.3□□□□□ -0.92
LIMA1-210ENST00000552045 SOX18P35713 384 aa9.3□□□□□ -0.92
LIMA1-210ENST00000552045 RIPOR1Q6ZS17 1223 aa9.3□□□□□ -0.92
LIMA1-210ENST00000552045 SV2BQ7L1I2 683 aa9.3□□□□□ -0.92
LIMA1-210ENST00000552045 KIAA0825Q8IV33 1275 aa9.3□□□□□ -0.92
LIMA1-210ENST00000552045 TMEM74Q96NL1 305 aa9.3□□□□□ -0.92
LIMA1-210ENST00000552045 TLR7Q9NYK1 1049 aaKnown RBP9.3□□□□□ -0.92
LIMA1-210ENST00000552045 ADAMTS1Q9UHI8 967 aa9.3□□□□□ -0.92
LIMA1-210ENST00000552045 AKAP2Q9Y2D5 859 aa9.3□□□□□ -0.92
LIMA1-210ENST00000552045 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.3□□□□□ -0.92
LIMA1-210ENST00000552045 MAN1A2O60476 641 aa9.29□□□□□ -0.92
LIMA1-210ENST00000552045 PSAPP07602 524 aa9.29□□□□□ -0.92
LIMA1-210ENST00000552045 MAPTP10636 758 aaKnown RBP9.29□□□□□ -0.92
LIMA1-210ENST00000552045 RLBP1P12271 317 aa9.29□□□□□ -0.92
LIMA1-210ENST00000552045 NFKB1P19838 968 aa9.29□□□□□ -0.92
LIMA1-210ENST00000552045 GBP2P32456 591 aaPredicted RBP9.29□□□□□ -0.92
LIMA1-210ENST00000552045 COL13A1Q5TAT6 717 aaPredicted RBP9.29□□□□□ -0.92
LIMA1-210ENST00000552045 NCAPG2Q86XI2 1143 aa9.29□□□□□ -0.92
LIMA1-210ENST00000552045 CCNJLQ8IV13 435 aa9.29□□□□□ -0.92
LIMA1-210ENST00000552045 CNTNAP3BQ96NU0 1288 aa9.29□□□□□ -0.92
LIMA1-210ENST00000552045 ZKSCAN3Q9BRR0 538 aa9.29□□□□□ -0.92
LIMA1-210ENST00000552045 CNTNAP3Q9BZ76 1288 aa9.29□□□□□ -0.92
LIMA1-210ENST00000552045 NUCKS1Q9H1E3 243 aaKnown RBP9.29□□□□□ -0.92
LIMA1-210ENST00000552045 EFCC1Q9HA90 598 aa9.29□□□□□ -0.92
LIMA1-210ENST00000552045 SENP2Q9HC62 589 aa9.29□□□□□ -0.92
LIMA1-210ENST00000552045 MINDY4BA8MYZ0 360 aa9.28□□□□□ -0.92
LIMA1-210ENST00000552045 F6X3S4 739 aa9.28□□□□□ -0.92
LIMA1-210ENST00000552045 MAP3K6O95382 1288 aa9.28□□□□□ -0.92
LIMA1-210ENST00000552045 HOXD8P13378 290 aaPredicted RBP9.28□□□□□ -0.92
LIMA1-210ENST00000552045 EIF4A3P38919 411 aaKnown RBP9.28□□□□□ -0.92
LIMA1-210ENST00000552045 HYAL2Q12891 473 aa9.28□□□□□ -0.92
LIMA1-210ENST00000552045 GRIN2CQ14957 1233 aa9.28□□□□□ -0.92
LIMA1-210ENST00000552045 KIFC2Q96AC6 838 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms