RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 C7orf43Q8WVR3 580 aa5.87□□□□□ -1.47
LIMA1-208ENST00000551691 ZNF428Q96B54 188 aa5.87□□□□□ -1.47
LIMA1-208ENST00000551691 CEP63Q96MT8 703 aa5.87□□□□□ -1.47
LIMA1-208ENST00000551691 SETBP1Q9Y6X0 1596 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 CPS1P31327 1500 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 GOLGA3Q08378 1498 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 USP17L3A6NCW0 530 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 USP17L4A6NCW7 530 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 SFI1A8K8P3 1242 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 ZBTB7BO15156 539 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-208ENST00000551691 SPATA31C1P0DKV0 1188 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 RXRBP28702 533 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 SPEM2Q0P670 501 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 LAMC2Q13753 1193 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 GRIK4Q16099 956 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 EFCAB2Q5VUJ9 269 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 CCDC102BQ68D86 513 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 USP17L2Q6R6M4 530 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 USP17L1Q7RTZ2 530 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 ZNF594Q96JF6 807 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-208ENST00000551691 UCN2Q96RP3 112 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 PHACTR1Q9C0D0 580 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 IGFLR1Q9H665 355 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 BRD7Q9NPI1 651 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 AMOTL2Q9Y2J4 779 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 STARD13Q9Y3M8 1113 aa5.86□□□□□ -1.47
LIMA1-208ENST00000551691 LRRC7Q96NW7 1537 aa5.85□□□□□ -1.47
LIMA1-208ENST00000551691 PLA2R1Q13018 1463 aa5.85□□□□□ -1.47
LIMA1-208ENST00000551691 ADH7P40394 386 aa5.85□□□□□ -1.47
LIMA1-208ENST00000551691 COL9A3Q14050 684 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-208ENST00000551691 LARP1Q6PKG0 1096 aaKnown RBP5.85□□□□□ -1.47
LIMA1-208ENST00000551691 TSEN2Q8NCE0 465 aaKnown RBP5.85□□□□□ -1.47
LIMA1-208ENST00000551691 MDFIQ99750 246 aa5.85□□□□□ -1.47
LIMA1-208ENST00000551691 TPSG1Q9NRR2 321 aa5.85□□□□□ -1.47
LIMA1-208ENST00000551691 VWDEQ8N2E2 1590 aa5.84□□□□□ -1.47
LIMA1-208ENST00000551691 PLCH2O75038 1416 aa5.84□□□□□ -1.47
LIMA1-208ENST00000551691 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.84□□□□□ -1.47
LIMA1-208ENST00000551691 SIN3BO75182 1162 aa5.84□□□□□ -1.47
LIMA1-208ENST00000551691 PSMA6P60900 246 aaKnown RBP5.84□□□□□ -1.47
LIMA1-208ENST00000551691 PRRT3Q5FWE3 981 aa5.84□□□□□ -1.47
LIMA1-208ENST00000551691 ZMYM1Q5SVZ6 1142 aa5.84□□□□□ -1.47
LIMA1-208ENST00000551691 GGT6Q6P531 493 aa5.84□□□□□ -1.47
LIMA1-208ENST00000551691 ANKLE2Q86XL3 938 aa5.84□□□□□ -1.47
LIMA1-208ENST00000551691 OGFOD1Q8N543 542 aa5.84□□□□□ -1.47
LIMA1-208ENST00000551691 NFATC2IPQ8NCF5 419 aa5.84□□□□□ -1.47
LIMA1-208ENST00000551691 BHMTQ93088 406 aa5.84□□□□□ -1.47
LIMA1-208ENST00000551691 NGLY1Q96IV0 654 aa5.84□□□□□ -1.47
LIMA1-208ENST00000551691 NOVA2Q9UNW9 492 aaKnown RBP5.84□□□□□ -1.47
LIMA1-208ENST00000551691 STRCP1A6NGW2 1772 aa5.84□□□□□ -1.47
LIMA1-208ENST00000551691 NUP153P49790 1475 aaKnown RBP5.83□□□□□ -1.48
LIMA1-208ENST00000551691 NPATQ14207 1427 aa5.83□□□□□ -1.48
LIMA1-208ENST00000551691 SUPT6HQ7KZ85 1726 aaKnown RBP5.83□□□□□ -1.48
LIMA1-208ENST00000551691 PPP1R12BO60237 982 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-208ENST00000551691 APBA3O96018 575 aa5.83□□□□□ -1.48
LIMA1-208ENST00000551691 SRPK2P78362 688 aaKnown RBP5.83□□□□□ -1.48
LIMA1-208ENST00000551691 RSPO4Q2I0M5 234 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-208ENST00000551691 FOXD4L6Q3SYB3 417 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-208ENST00000551691 FOXD4L3Q6VB84 417 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-208ENST00000551691 MICALL1Q8N3F8 863 aa5.83□□□□□ -1.48
LIMA1-208ENST00000551691 RBM19Q9Y4C8 960 aaKnown RBP5.83□□□□□ -1.48
LIMA1-208ENST00000551691 NEURL4Q96JN8 1562 aa5.82□□□□□ -1.48
LIMA1-208ENST00000551691 DIP2CQ9Y2E4 1556 aa5.82□□□□□ -1.48
LIMA1-208ENST00000551691 CEP170BQ9Y4F5 1589 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-208ENST00000551691 TMEM88BA6NKF7 163 aa5.82□□□□□ -1.48
LIMA1-208ENST00000551691 ADARB2-AS1A8MUL3 147 aa5.82□□□□□ -1.48
LIMA1-208ENST00000551691 LZTS3O60299 673 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-208ENST00000551691 TYRO3Q06418 890 aa5.82□□□□□ -1.48
LIMA1-208ENST00000551691 MEX3CQ5U5Q3 659 aaKnown RBP5.82□□□□□ -1.48
LIMA1-208ENST00000551691 TRIM50Q86XT4 487 aa5.82□□□□□ -1.48
LIMA1-208ENST00000551691 NUDT8Q8WV74 236 aa5.82□□□□□ -1.48
LIMA1-208ENST00000551691 SUSD3Q96L08 255 aa5.82□□□□□ -1.48
LIMA1-208ENST00000551691 BCL11AQ9H165 835 aa5.82□□□□□ -1.48
LIMA1-208ENST00000551691 MKRN1Q9UHC7 482 aaKnown RBP5.82□□□□□ -1.48
LIMA1-208ENST00000551691 SCO2A0A1W2PP80 73 aa5.81□□□□□ -1.48
LIMA1-208ENST00000551691 C21orf2O43822 256 aa5.81□□□□□ -1.48
LIMA1-208ENST00000551691 NID1P14543 1247 aa5.81□□□□□ -1.48
LIMA1-208ENST00000551691 TRIM28Q13263 835 aaKnown RBP5.81□□□□□ -1.48
LIMA1-208ENST00000551691 TRAPPC3LQ5T215 181 aa5.81□□□□□ -1.48
LIMA1-208ENST00000551691 TMEM164Q5U3C3 297 aa5.81□□□□□ -1.48
LIMA1-208ENST00000551691 ZNF772Q68DY9 489 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-208ENST00000551691 TNFRSF25Q93038 417 aa5.81□□□□□ -1.48
LIMA1-208ENST00000551691 UBE2OQ9C0C9 1292 aaKnown RBP5.81□□□□□ -1.48
LIMA1-208ENST00000551691 BIN2Q9UBW5 565 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-208ENST00000551691 KCNH4Q9UQ05 1017 aa5.81□□□□□ -1.48
LIMA1-208ENST00000551691 GNEQ9Y223 722 aaKnown RBP5.81□□□□□ -1.48
LIMA1-208ENST00000551691 FAM135BQ49AJ0 1406 aa5.81□□□□□ -1.48
LIMA1-208ENST00000551691 CNTLNQ9NXG0 1405 aa5.81□□□□□ -1.48
LIMA1-208ENST00000551691 DNMT1P26358 1616 aaKnown RBP5.81□□□□□ -1.48
LIMA1-208ENST00000551691 RAPGEF6Q8TEU7 1601 aa5.81□□□□□ -1.48
LIMA1-208ENST00000551691 CFAP74Q9C0B2 1584 aa5.8□□□□□ -1.48
LIMA1-208ENST00000551691 SPDYE3A6NKU9 549 aa5.8□□□□□ -1.48
LIMA1-208ENST00000551691 RASA1P20936 1047 aa5.8□□□□□ -1.48
LIMA1-208ENST00000551691 ARID4AP29374 1257 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-208ENST00000551691 ATP1A2P50993 1020 aa5.8□□□□□ -1.48
LIMA1-208ENST00000551691 ELOAQ14241 798 aaKnown RBP5.8□□□□□ -1.48
LIMA1-208ENST00000551691 NKAPLQ5M9Q1 402 aa5.8□□□□□ -1.48
LIMA1-208ENST00000551691 SHISA2Q6UWI4 295 aa5.8□□□□□ -1.48
LIMA1-208ENST00000551691 PLEKHM2Q8IWE5 1019 aa5.8□□□□□ -1.48
LIMA1-208ENST00000551691 FAM200AQ8TCP9 573 aa5.8□□□□□ -1.48
LIMA1-208ENST00000551691 SCG3Q8WXD2 468 aaKnown RBP5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms