RNA–Protein interactions for RNA: ENST00000550587.5

DEPDC4-209, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,165 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-209ENST00000550587 SSFA2P28290 1259 aa8.09□□□□□ -1.11
DEPDC4-209ENST00000550587 U2AF1Q01081 240 aaKnown RBP eCLIP8.09□□□□□ -1.11
DEPDC4-209ENST00000550587 MTMR2Q13614 643 aa8.09□□□□□ -1.11
DEPDC4-209ENST00000550587 BAP1Q92560 729 aa8.09□□□□□ -1.11
DEPDC4-209ENST00000550587 RUNDC1Q96C34 613 aa8.09□□□□□ -1.11
DEPDC4-209ENST00000550587 EVA1BQ9NVM1 165 aa8.09□□□□□ -1.11
DEPDC4-209ENST00000550587 RGPD2P0DJD1 1756 aa8.09□□□□□ -1.11
DEPDC4-209ENST00000550587 U2SURPO15042 1029 aaKnown RBP8.08□□□□□ -1.12
DEPDC4-209ENST00000550587 CYP27B1O15528 508 aa8.08□□□□□ -1.12
DEPDC4-209ENST00000550587 HSP90AB1P08238 724 aaKnown RBP8.08□□□□□ -1.12
DEPDC4-209ENST00000550587 YBX3P16989 372 aaKnown RBP eCLIP8.08□□□□□ -1.12
DEPDC4-209ENST00000550587 KCNH2Q12809 1159 aa8.08□□□□□ -1.12
DEPDC4-209ENST00000550587 IFNL2Q8IZJ0 200 aa8.08□□□□□ -1.12
DEPDC4-209ENST00000550587 WASF2Q9Y6W5 498 aa8.08□□□□□ -1.12
DEPDC4-209ENST00000550587 LOC102724428A0A0B4J2F2 783 aa8.07□□□□□ -1.12
DEPDC4-209ENST00000550587 APAF1O14727 1248 aa8.07□□□□□ -1.12
DEPDC4-209ENST00000550587 SIK1P57059 783 aa8.07□□□□□ -1.12
DEPDC4-209ENST00000550587 EIF4A2Q14240 407 aaKnown RBP8.07□□□□□ -1.12
DEPDC4-209ENST00000550587 LCE2CQ5TA81 110 aa8.07□□□□□ -1.12
DEPDC4-209ENST00000550587 PIGBQ92521 554 aa8.07□□□□□ -1.12
DEPDC4-209ENST00000550587 PLEKHF1Q96S99 279 aa8.07□□□□□ -1.12
DEPDC4-209ENST00000550587 TBC1D2Q9BYX2 928 aa8.07□□□□□ -1.12
DEPDC4-209ENST00000550587 PCDHB15Q9Y5E8 787 aa8.07□□□□□ -1.12
DEPDC4-209ENST00000550587 C5P01031 1676 aa8.07□□□□□ -1.12
DEPDC4-209ENST00000550587 COL24A1Q17RW2 1714 aa8.06□□□□□ -1.12
DEPDC4-209ENST00000550587 TUBGCP6Q96RT7 1819 aa8.06□□□□□ -1.12
DEPDC4-209ENST00000550587 TERTO14746 1132 aaKnown RBP8.06□□□□□ -1.12
DEPDC4-209ENST00000550587 BMP1P13497 986 aa8.06□□□□□ -1.12
DEPDC4-209ENST00000550587 TRAPPC3LQ5T215 181 aa8.06□□□□□ -1.12
DEPDC4-209ENST00000550587 PARP9Q8IXQ6 854 aa8.06□□□□□ -1.12
DEPDC4-209ENST00000550587 CCDC146Q8IYE0 955 aa8.06□□□□□ -1.12
DEPDC4-209ENST00000550587 NLGN1Q8N2Q7 840 aa8.06□□□□□ -1.12
DEPDC4-209ENST00000550587 ZNF526Q8TF50 670 aaPredicted RBP8.06□□□□□ -1.12
DEPDC4-209ENST00000550587 KIFC2Q96AC6 838 aa8.06□□□□□ -1.12
DEPDC4-209ENST00000550587 RTCBQ9Y3I0 505 aaKnown RBP8.06□□□□□ -1.12
DEPDC4-209ENST00000550587 TLL2Q9Y6L7 1015 aa8.06□□□□□ -1.12
DEPDC4-209ENST00000550587 IGSF1Q8N6C5 1336 aa8.05□□□□□ -1.12
DEPDC4-209ENST00000550587 CAPN5O15484 640 aaPredicted RBP8.05□□□□□ -1.12
DEPDC4-209ENST00000550587 PRELPP51888 382 aa8.05□□□□□ -1.12
DEPDC4-209ENST00000550587 TGFB2P61812 414 aa8.05□□□□□ -1.12
DEPDC4-209ENST00000550587 PLEKHO1Q53GL0 409 aaPredicted RBP8.05□□□□□ -1.12
DEPDC4-209ENST00000550587 RSBN1LQ6PCB5 846 aaPredicted RBP8.05□□□□□ -1.12
DEPDC4-209ENST00000550587 TRIM46Q7Z4K8 759 aa8.05□□□□□ -1.12
DEPDC4-209ENST00000550587 RSPH6AQ9H0K4 717 aa8.05□□□□□ -1.12
DEPDC4-209ENST00000550587 SHANK3Q9BYB0 1731 aa8.05□□□□□ -1.12
DEPDC4-209ENST00000550587 ATP10DQ9P241 1426 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 C4BP0C0L5 1744 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 SPDYE5A6NIY4 337 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 ERVV-2B6SEH9 535 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 TRIM66O15016 1216 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 NEFMP07197 916 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 PHKG2P15735 406 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 RFC4P35249 363 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 CCDC27Q2M243 656 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 C1orf141Q5JVX7 400 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 DESI1Q6ICB0 168 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 ZNF511Q8NB15 262 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 DCAF5Q96JK2 942 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 CCDC87Q9NVE4 849 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 ASAP1Q9ULH1 1129 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 PARP3Q9Y6F1 533 aa8.04□□□□□ -1.12
DEPDC4-209ENST00000550587 ZNF521Q96K83 1311 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 TAF1LQ8IZX4 1826 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 UTRNP46939 3433 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 CFAP99D6REC4 459 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 MMP10P09238 476 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 HMOX1P09601 288 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 HSPA6P17066 643 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 PRKAR2BP31323 418 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 CTHP32929 405 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 CABP4P57796 275 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 AMOTQ4VCS5 1084 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 C16orf71Q8IYS4 520 aaPredicted RBP8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 LINC00116Q8NCU8 138 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 WWC3Q9ULE0 1092 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 BCS1LQ9Y276 419 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 ITGB4P16144 1822 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 MAPK8IP3Q9UPT6 1336 aa8.03□□□□□ -1.12
DEPDC4-209ENST00000550587 KDRP35968 1356 aa8.02□□□□□ -1.13
DEPDC4-209ENST00000550587 PLEKHG2Q9H7P9 1386 aa8.02□□□□□ -1.13
DEPDC4-209ENST00000550587 WIPF1O43516 503 aa8.02□□□□□ -1.13
DEPDC4-209ENST00000550587 TMPOP42166 694 aaKnown RBP8.02□□□□□ -1.13
DEPDC4-209ENST00000550587 SULT6B1Q6IMI4 303 aa8.02□□□□□ -1.13
DEPDC4-209ENST00000550587 LYPD8Q6UX82 237 aa8.02□□□□□ -1.13
DEPDC4-209ENST00000550587 WDR63Q8IWG1 891 aa8.02□□□□□ -1.13
DEPDC4-209ENST00000550587 WWC1Q8IX03 1113 aa8.02□□□□□ -1.13
DEPDC4-209ENST00000550587 PHACTR3Q96KR7 559 aa8.02□□□□□ -1.13
DEPDC4-209ENST00000550587 ATG3Q9NT62 314 aa8.02□□□□□ -1.13
DEPDC4-209ENST00000550587 PKD1L3Q7Z443 1732 aa8.01□□□□□ -1.13
DEPDC4-209ENST00000550587 SPTLC1O15269 473 aa8.01□□□□□ -1.13
DEPDC4-209ENST00000550587 VARSP26640 1264 aaKnown RBP8.01□□□□□ -1.13
DEPDC4-209ENST00000550587 GJA5P36382 358 aa8.01□□□□□ -1.13
DEPDC4-209ENST00000550587 RIPK4P57078 832 aa8.01□□□□□ -1.13
DEPDC4-209ENST00000550587 NEUROD2Q15784 382 aa8.01□□□□□ -1.13
DEPDC4-209ENST00000550587 NFE2L2Q16236 605 aa8.01□□□□□ -1.13
DEPDC4-209ENST00000550587 CSPP1Q1MSJ5 1256 aa8.01□□□□□ -1.13
DEPDC4-209ENST00000550587 ARHGAP27Q6ZUM4 889 aa8.01□□□□□ -1.13
DEPDC4-209ENST00000550587 TRMT2AQ8IZ69 625 aaKnown RBP8.01□□□□□ -1.13
DEPDC4-209ENST00000550587 UBR3Q6ZT12 1888 aa8□□□□□ -1.13
DEPDC4-209ENST00000550587 RPS6KA4O75676 772 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms