RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ARAP3Q8WWN8 1544 aa18.91■□□□□ 0.62
CUX1-213ENST00000549414 TRMT1Q9NXH9 659 aaKnown RBP18.91■□□□□ 0.62
CUX1-213ENST00000549414 MAGEC2Q9UBF1 373 aaPredicted RBP18.91■□□□□ 0.62
CUX1-213ENST00000549414 CLASP1Q7Z460 1538 aa18.91■□□□□ 0.62
CUX1-213ENST00000549414 NEURL1BA8MQ27 555 aa18.91■□□□□ 0.62
CUX1-213ENST00000549414 OFD1O75665 1012 aa18.91■□□□□ 0.62
CUX1-213ENST00000549414 KRT18P05783 430 aaKnown RBP18.91■□□□□ 0.62
CUX1-213ENST00000549414 CNNM3Q8NE01 707 aa18.91■□□□□ 0.62
CUX1-213ENST00000549414 SLC4A4Q9Y6R1 1079 aa18.91■□□□□ 0.62
CUX1-213ENST00000549414 NLRP1Q9C000 1473 aa18.9■□□□□ 0.62
CUX1-213ENST00000549414 PRKCSHP14314 528 aaPredicted RBP18.9■□□□□ 0.62
CUX1-213ENST00000549414 MARCKSP29966 332 aaPredicted RBP18.9■□□□□ 0.62
CUX1-213ENST00000549414 JAG2Q9Y219 1238 aa18.9■□□□□ 0.62
CUX1-213ENST00000549414 ZBTB43O43298 467 aa18.9■□□□□ 0.62
CUX1-213ENST00000549414 DACH1Q9UI36 760 aa18.9■□□□□ 0.62
CUX1-213ENST00000549414 EPS15P42566 896 aa18.9■□□□□ 0.62
CUX1-213ENST00000549414 ALG1Q9BT22 464 aa18.9■□□□□ 0.62
CUX1-213ENST00000549414 ZSCAN16Q9H4T2 348 aaPredicted RBP18.9■□□□□ 0.62
CUX1-213ENST00000549414 SMTNL1A8MU46 457 aa18.9■□□□□ 0.62
CUX1-213ENST00000549414 RFC4P35249 363 aa18.9■□□□□ 0.62
CUX1-213ENST00000549414 ANO6Q4KMQ2 910 aa18.9■□□□□ 0.62
CUX1-213ENST00000549414 C16orf45Q96MC5 204 aaPredicted RBP18.9■□□□□ 0.62
CUX1-213ENST00000549414 ARHGAP31Q2M1Z3 1444 aa18.9■□□□□ 0.62
CUX1-213ENST00000549414 A2ML1A8K2U0 1454 aa18.89■□□□□ 0.62
CUX1-213ENST00000549414 ABCA6Q8N139 1617 aa18.89■□□□□ 0.62
CUX1-213ENST00000549414 PTPDC1A2A3K4 754 aa18.89■□□□□ 0.61
CUX1-213ENST00000549414 PHKG2P15735 406 aa18.89■□□□□ 0.61
CUX1-213ENST00000549414 TTLL7Q6ZT98 887 aa18.89■□□□□ 0.61
CUX1-213ENST00000549414 DHX32Q7L7V1 743 aaKnown RBP18.89■□□□□ 0.61
CUX1-213ENST00000549414 LMTK3Q96Q04 1460 aa18.89■□□□□ 0.61
CUX1-213ENST00000549414 GLI2P10070 1586 aa18.89■□□□□ 0.61
CUX1-213ENST00000549414 SFPQP23246 707 aaKnown RBP eCLIP18.89■□□□□ 0.611e-6■■■■□ 21.6
CUX1-213ENST00000549414 HSP90AA4PQ58FG1 418 aa18.89■□□□□ 0.61
CUX1-213ENST00000549414 TTC12Q9H892 705 aaPredicted RBP18.89■□□□□ 0.61
CUX1-213ENST00000549414 NCOA5Q9HCD5 579 aaKnown RBP18.89■□□□□ 0.61
CUX1-213ENST00000549414 ARHGEF25Q86VW2 580 aa18.89■□□□□ 0.61
CUX1-213ENST00000549414 ANKRD18AQ8IVF6 992 aa18.89■□□□□ 0.61
CUX1-213ENST00000549414 KIF24Q5T7B8 1368 aa18.88■□□□□ 0.61
CUX1-213ENST00000549414 MPHOSPH10O00566 681 aaKnown RBP18.88■□□□□ 0.61
CUX1-213ENST00000549414 CATIPQ7Z7H3 387 aa18.88■□□□□ 0.61
CUX1-213ENST00000549414 DNAJC25Q9H1X3 360 aa18.88■□□□□ 0.61
CUX1-213ENST00000549414 TSPY2A6NKD2 308 aa18.88■□□□□ 0.61
CUX1-213ENST00000549414 PTH1RQ03431 593 aa18.88■□□□□ 0.61
CUX1-213ENST00000549414 ARGLU1Q9NWB6 273 aaPredicted RBP18.88■□□□□ 0.61
CUX1-213ENST00000549414 HSPA4P34932 840 aa18.88■□□□□ 0.61
CUX1-213ENST00000549414 ZNF444Q8N0Y2 327 aaPredicted RBP18.88■□□□□ 0.61
CUX1-213ENST00000549414 CCDC70Q6NSX1 233 aa18.88■□□□□ 0.61
CUX1-213ENST00000549414 RPGRQ92834 1020 aaKnown RBP18.88■□□□□ 0.61
CUX1-213ENST00000549414 SMARCE1Q969G3 411 aa18.88■□□□□ 0.61
CUX1-213ENST00000549414 RBSNQ9H1K0 784 aa18.88■□□□□ 0.61
CUX1-213ENST00000549414 WTAPQ15007 396 aa18.87■□□□□ 0.61
CUX1-213ENST00000549414 CTAGE5O15320 804 aa18.87■□□□□ 0.61
CUX1-213ENST00000549414 NLRP5P59047 1200 aa18.87■□□□□ 0.61
CUX1-213ENST00000549414 UTP14AQ9BVJ6 771 aaKnown RBP18.87■□□□□ 0.61
CUX1-213ENST00000549414 CEP131Q9UPN4 1083 aa18.87■□□□□ 0.61
CUX1-213ENST00000549414 CBFA2T2O43439 604 aa18.87■□□□□ 0.61
CUX1-213ENST00000549414 ITGA6P23229 1130 aa18.87■□□□□ 0.61
CUX1-213ENST00000549414 MAGEB6Q8N7X4 407 aa18.87■□□□□ 0.61
CUX1-213ENST00000549414 GADD45BO75293 160 aaPredicted RBP18.86■□□□□ 0.61
CUX1-213ENST00000549414 ZNF622Q969S3 477 aaKnown RBP eCLIP18.86■□□□□ 0.611e-7■■□□□ 13.1
CUX1-213ENST00000549414 SEC62Q99442 399 aaKnown RBP18.86■□□□□ 0.61
CUX1-213ENST00000549414 SLAIN2Q9P270 581 aa18.86■□□□□ 0.61
CUX1-213ENST00000549414 IBTKQ9P2D0 1353 aaPredicted RBP18.86■□□□□ 0.61
CUX1-213ENST00000549414 RPS6KB1P23443 525 aa18.86■□□□□ 0.61
CUX1-213ENST00000549414 VAT1LQ9HCJ6 419 aa18.86■□□□□ 0.61
CUX1-213ENST00000549414 STX1AQ16623 288 aa18.86■□□□□ 0.61
CUX1-213ENST00000549414 CCDC191Q8NCU4 936 aa18.86■□□□□ 0.61
CUX1-213ENST00000549414 AOX1Q06278 1338 aa18.86■□□□□ 0.61
CUX1-213ENST00000549414 A0A0D9SFI3 127 aa18.86■□□□□ 0.61
CUX1-213ENST00000549414 STIM1Q13586 685 aa18.86■□□□□ 0.61
CUX1-213ENST00000549414 STX8Q9UNK0 236 aa18.86■□□□□ 0.61
CUX1-213ENST00000549414 SETD1BQ9UPS6 1966 aaKnown RBP18.86■□□□□ 0.61
CUX1-213ENST00000549414 GPS2Q13227 327 aa18.85■□□□□ 0.61
CUX1-213ENST00000549414 ZKSCAN3Q9BRR0 538 aa18.85■□□□□ 0.61
CUX1-213ENST00000549414 CDK12Q9NYV4 1490 aaPredicted RBP18.85■□□□□ 0.61
CUX1-213ENST00000549414 CAGE1Q8TC20 777 aa18.85■□□□□ 0.61
CUX1-213ENST00000549414 XAGE2Q96GT9 111 aa18.85■□□□□ 0.61
CUX1-213ENST00000549414 CEP152O94986 1710 aa18.85■□□□□ 0.61
CUX1-213ENST00000549414 OTUD7BQ6GQQ9 843 aa18.84■□□□□ 0.61
CUX1-213ENST00000549414 CPLX3Q8WVH0 158 aa18.84■□□□□ 0.61
CUX1-213ENST00000549414 TANGO6Q9C0B7 1094 aa18.84■□□□□ 0.61
CUX1-213ENST00000549414 MAP7D2Q96T17 732 aa18.84■□□□□ 0.61
CUX1-213ENST00000549414 SETDB2Q96T68 719 aa18.84■□□□□ 0.61
CUX1-213ENST00000549414 LMBRD1Q9NUN5 540 aa18.84■□□□□ 0.61
CUX1-213ENST00000549414 CCDC24Q8N4L8 307 aa18.84■□□□□ 0.61
CUX1-213ENST00000549414 KBTBD3Q8NAB2 608 aa18.84■□□□□ 0.61
CUX1-213ENST00000549414 TAF5LO75529 589 aa18.83■□□□□ 0.61
CUX1-213ENST00000549414 TMC6Q7Z403 805 aa18.83■□□□□ 0.61
CUX1-213ENST00000549414 FAM200AQ8TCP9 573 aa18.83■□□□□ 0.61
CUX1-213ENST00000549414 NLRP3Q96P20 1036 aa18.83■□□□□ 0.61
CUX1-213ENST00000549414 JAK2O60674 1132 aa18.83■□□□□ 0.6
CUX1-213ENST00000549414 PTPN14Q15678 1187 aa18.83■□□□□ 0.6
CUX1-213ENST00000549414 TLR7Q9NYK1 1049 aaKnown RBP18.83■□□□□ 0.6
CUX1-213ENST00000549414 TYRO3Q06418 890 aa18.83■□□□□ 0.6
CUX1-213ENST00000549414 NAA16Q6N069 864 aaPredicted RBP18.83■□□□□ 0.6
CUX1-213ENST00000549414 RASEFQ8IZ41 740 aa18.83■□□□□ 0.6
CUX1-213ENST00000549414 TMEM94Q12767 1356 aa18.83■□□□□ 0.6
CUX1-213ENST00000549414 SYKP43405 635 aa18.82■□□□□ 0.6
CUX1-213ENST00000549414 CCDC186Q7Z3E2 898 aa18.82■□□□□ 0.6
CUX1-213ENST00000549414 ADGRB3O60242 1522 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms