RNA–Protein interactions for RNA: ENST00000549354.6

LINC00661-204, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best) BASIC

Gene LINC00661, Length 3,340 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-204ENST00000549354 PTPN12Q05209 780 aaKnown RBP13.21□□□□□ -0.29
LINC00661-204ENST00000549354 VPS72Q15906 364 aa13.21□□□□□ -0.29
LINC00661-204ENST00000549354 FNBP4Q8N3X1 1017 aaPredicted RBP13.21□□□□□ -0.29
LINC00661-204ENST00000549354 SYAP1Q96A49 352 aaPredicted RBP13.21□□□□□ -0.29
LINC00661-204ENST00000549354 GLRX3O76003 335 aaKnown RBP13.21□□□□□ -0.3
LINC00661-204ENST00000549354 CHST3Q7LGC8 479 aa13.21□□□□□ -0.3
LINC00661-204ENST00000549354 TLR7Q9NYK1 1049 aaKnown RBP13.21□□□□□ -0.3
LINC00661-204ENST00000549354 KAT6BQ8WYB5 2073 aa13.2□□□□□ -0.3
LINC00661-204ENST00000549354 HSP90B1P14625 803 aaKnown RBP13.2□□□□□ -0.3
LINC00661-204ENST00000549354 MAP3K15Q6ZN16 1313 aa13.2□□□□□ -0.3
LINC00661-204ENST00000549354 GOLGA6L4A6NEF3 574 aa13.2□□□□□ -0.3
LINC00661-204ENST00000549354 NUTM2BA6NNL0 878 aaPredicted RBP13.2□□□□□ -0.3
LINC00661-204ENST00000549354 NUTM2EB1AL46 878 aaPredicted RBP13.2□□□□□ -0.3
LINC00661-204ENST00000549354 NUTM2AQ8IVF1 878 aaPredicted RBP13.2□□□□□ -0.3
LINC00661-204ENST00000549354 ECHDC1Q9NTX5 307 aa13.2□□□□□ -0.3
LINC00661-204ENST00000549354 NPHP1O15259 732 aa13.19□□□□□ -0.3
LINC00661-204ENST00000549354 CCDC129Q6ZRS4 1044 aa13.19□□□□□ -0.3
LINC00661-204ENST00000549354 PLA2G12BQ9BX93 195 aa13.19□□□□□ -0.3
LINC00661-204ENST00000549354 ANKRD36CQ5JPF3 1778 aa13.19□□□□□ -0.3
LINC00661-204ENST00000549354 SPATA31A6Q5VVP1 1343 aa13.19□□□□□ -0.3
LINC00661-204ENST00000549354 SYT1P21579 422 aa13.19□□□□□ -0.3
LINC00661-204ENST00000549354 GJB2P29033 226 aa13.19□□□□□ -0.3
LINC00661-204ENST00000549354 FSD1Q9BTV5 496 aa13.19□□□□□ -0.3
LINC00661-204ENST00000549354 ZBTB3Q9H5J0 574 aa13.19□□□□□ -0.3
LINC00661-204ENST00000549354 EAF2Q96CJ1 260 aaPredicted RBP13.19□□□□□ -0.3
LINC00661-204ENST00000549354 NEUROD6Q96NK8 337 aa13.19□□□□□ -0.3
LINC00661-204ENST00000549354 ZHX1Q9UKY1 873 aaPredicted RBP13.19□□□□□ -0.3
LINC00661-204ENST00000549354 WDR33Q9C0J8 1336 aaKnown RBP13.18□□□□□ -0.3
LINC00661-204ENST00000549354 GIGYF2Q6Y7W6 1299 aaKnown RBP13.18□□□□□ -0.3
LINC00661-204ENST00000549354 ZNF592Q92610 1267 aa13.18□□□□□ -0.3
LINC00661-204ENST00000549354 ERVV-1B6SEH8 477 aa13.18□□□□□ -0.3
LINC00661-204ENST00000549354 IL6STP40189 918 aaPredicted RBP13.18□□□□□ -0.3
LINC00661-204ENST00000549354 CUL4AQ13619 759 aa13.18□□□□□ -0.3
LINC00661-204ENST00000549354 HS1BP3Q53T59 392 aa13.18□□□□□ -0.3
LINC00661-204ENST00000549354 HSP90AB3PQ58FF7 597 aa13.18□□□□□ -0.3
LINC00661-204ENST00000549354 GPATCH3Q96I76 525 aa13.18□□□□□ -0.3
LINC00661-204ENST00000549354 SNX14Q9Y5W7 946 aa13.18□□□□□ -0.3
LINC00661-204ENST00000549354 MCM2P49736 904 aa13.18□□□□□ -0.3
LINC00661-204ENST00000549354 CSPP1Q1MSJ5 1256 aa13.18□□□□□ -0.3
LINC00661-204ENST00000549354 KIF6Q6ZMV9 814 aa13.18□□□□□ -0.3
LINC00661-204ENST00000549354 TCHHQ07283 1943 aa13.17□□□□□ -0.3
LINC00661-204ENST00000549354 THSD7AQ9UPZ6 1657 aa13.17□□□□□ -0.3
LINC00661-204ENST00000549354 STX6O43752 255 aa13.17□□□□□ -0.3
LINC00661-204ENST00000549354 PCCAP05165 728 aaPredicted RBP13.17□□□□□ -0.3
LINC00661-204ENST00000549354 CBX1P83916 185 aa13.17□□□□□ -0.3
LINC00661-204ENST00000549354 SASS6Q6UVJ0 657 aa13.17□□□□□ -0.3
LINC00661-204ENST00000549354 RUFY3Q7L099 469 aa13.17□□□□□ -0.3
LINC00661-204ENST00000549354 CNTROBQ8N137 903 aa13.17□□□□□ -0.3
LINC00661-204ENST00000549354 SEC62Q99442 399 aaKnown RBP13.17□□□□□ -0.3
LINC00661-204ENST00000549354 LMBR1LQ6UX01 489 aa13.17□□□□□ -0.3
LINC00661-204ENST00000549354 CDHR2Q9BYE9 1310 aa13.17□□□□□ -0.3
LINC00661-204ENST00000549354 NOLC1Q14978 699 aaKnown RBP eCLIP13.16□□□□□ -0.3
LINC00661-204ENST00000549354 SYTL4Q96C24 671 aaPredicted RBP13.16□□□□□ -0.3
LINC00661-204ENST00000549354 GPR108Q9NPR9 543 aa13.16□□□□□ -0.3
LINC00661-204ENST00000549354 PDRG1Q9NUG6 133 aa13.16□□□□□ -0.3
LINC00661-204ENST00000549354 SPDYE4A6NLX3 237 aa13.16□□□□□ -0.3
LINC00661-204ENST00000549354 ZSCAN22P10073 491 aaPredicted RBP13.16□□□□□ -0.3
LINC00661-204ENST00000549354 LARP1BQ659C4 914 aaKnown RBP13.16□□□□□ -0.3
LINC00661-204ENST00000549354 CIAO1O76071 339 aa13.15□□□□□ -0.3
LINC00661-204ENST00000549354 PHF14O94880 888 aa13.15□□□□□ -0.3
LINC00661-204ENST00000549354 CSF1RP07333 972 aa13.15□□□□□ -0.3
LINC00661-204ENST00000549354 ANAPC15P60006 121 aa13.15□□□□□ -0.3
LINC00661-204ENST00000549354 INTS5Q6P9B9 1019 aaKnown RBP13.15□□□□□ -0.3
LINC00661-204ENST00000549354 ZBTB38Q8NAP3 1195 aaPredicted RBP13.15□□□□□ -0.3
LINC00661-204ENST00000549354 CHMP4CQ96CF2 233 aa13.15□□□□□ -0.3
LINC00661-204ENST00000549354 FBXO3Q9UK99 471 aa13.15□□□□□ -0.3
LINC00661-204ENST00000549354 ZBTB1Q9Y2K1 713 aa13.15□□□□□ -0.3
LINC00661-204ENST00000549354 COL5A3P25940 1745 aaPredicted RBP13.15□□□□□ -0.3
LINC00661-204ENST00000549354 HSPA4P34932 840 aa13.15□□□□□ -0.3
LINC00661-204ENST00000549354 EIF5P55010 431 aaKnown RBP13.15□□□□□ -0.3
LINC00661-204ENST00000549354 ATG9AQ7Z3C6 839 aa13.15□□□□□ -0.3
LINC00661-204ENST00000549354 SNRKQ9NRH2 765 aa13.15□□□□□ -0.3
LINC00661-204ENST00000549354 NUP98P52948 1817 aa13.15□□□□□ -0.3
LINC00661-204ENST00000549354 SGSM2O43147 1006 aa13.15□□□□□ -0.31
LINC00661-204ENST00000549354 CCT2P78371 535 aaKnown RBP13.15□□□□□ -0.31
LINC00661-204ENST00000549354 DDX46Q7L014 1031 aaKnown RBP13.15□□□□□ -0.31
LINC00661-204ENST00000549354 EVI5LQ96CN4 794 aa13.15□□□□□ -0.31
LINC00661-204ENST00000549354 TNNI3KQ59H18 835 aa13.14□□□□□ -0.31
LINC00661-204ENST00000549354 CCDC183Q5T5S1 534 aa13.14□□□□□ -0.31
LINC00661-204ENST00000549354 SMARCC1Q92922 1105 aaPredicted RBP13.14□□□□□ -0.31
LINC00661-204ENST00000549354 INTS4Q96HW7 963 aaKnown RBP13.14□□□□□ -0.31
LINC00661-204ENST00000549354 FPGT-TNNI3KV9GXZ4 949 aa13.14□□□□□ -0.31
LINC00661-204ENST00000549354 AP5Z1O43299 807 aa13.14□□□□□ -0.31
LINC00661-204ENST00000549354 NLRP10Q86W26 655 aa13.14□□□□□ -0.31
LINC00661-204ENST00000549354 BICD2Q8TD16 824 aa13.14□□□□□ -0.31
LINC00661-204ENST00000549354 FTOQ9C0B1 505 aaKnown RBP eCLIP13.14□□□□□ -0.31
LINC00661-204ENST00000549354 TFCP2Q12800 502 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 HLFQ16534 295 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 ISM2Q6H9L7 571 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 LUZP1Q86V48 1076 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 NGLY1Q96IV0 654 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 LIMCH1Q9UPQ0 1083 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 LOC102724428A0A0B4J2F2 783 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 JAK2O60674 1132 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 ATP5JP18859 108 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 SIK1P57059 783 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 TICAM2Q86XR7 235 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 ZNF34Q8IZ26 560 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 CERKQ8TCT0 537 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 DYNC1I1O14576 645 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms