RNA–Protein interactions for RNA: ENST00000548122.2

PTPRB-206, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 2

Gene PTPRB, Length 4,237 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-206ENST00000548122 PANK1Q8TE04 598 aa6.72□□□□□ -1.33
PTPRB-206ENST00000548122 ABCF2Q9UG63 623 aa6.72□□□□□ -1.33
PTPRB-206ENST00000548122 BRWD3Q6RI45 1802 aa6.72□□□□□ -1.33
PTPRB-206ENST00000548122 RNF123Q5XPI4 1314 aa6.72□□□□□ -1.33
PTPRB-206ENST00000548122 COL3A1P02461 1466 aaPredicted RBP6.72□□□□□ -1.33
PTPRB-206ENST00000548122 RARSP54136 660 aaKnown RBP6.72□□□□□ -1.33
PTPRB-206ENST00000548122 CCDC158Q5M9N0 1113 aa6.72□□□□□ -1.33
PTPRB-206ENST00000548122 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.72□□□□□ -1.33
PTPRB-206ENST00000548122 ZSCAN29Q8IWY8 852 aaPredicted RBP6.72□□□□□ -1.33
PTPRB-206ENST00000548122 C1orf115Q9H7X2 142 aa6.72□□□□□ -1.33
PTPRB-206ENST00000548122 LRRFIP2Q9Y608 721 aaKnown RBP6.72□□□□□ -1.33
PTPRB-206ENST00000548122 COL18A1P39060 1754 aa6.72□□□□□ -1.33
PTPRB-206ENST00000548122 ZNF853P0CG23 659 aa6.72□□□□□ -1.33
PTPRB-206ENST00000548122 PTGER2P43116 358 aa6.72□□□□□ -1.33
PTPRB-206ENST00000548122 CIAPIN1Q6FI81 312 aa6.72□□□□□ -1.33
PTPRB-206ENST00000548122 DDRGK1Q96HY6 314 aa6.72□□□□□ -1.33
PTPRB-206ENST00000548122 NAP1L2Q9ULW6 460 aaPredicted RBP6.72□□□□□ -1.33
PTPRB-206ENST00000548122 IQSEC3Q9UPP2 1182 aaPredicted RBP6.72□□□□□ -1.33
PTPRB-206ENST00000548122 DOT1LQ8TEK3 1739 aa6.72□□□□□ -1.33
PTPRB-206ENST00000548122 ATP2B4P23634 1241 aa6.71□□□□□ -1.33
PTPRB-206ENST00000548122 TM4SF1P30408 202 aa6.71□□□□□ -1.33
PTPRB-206ENST00000548122 TTC39AQ5SRH9 613 aa6.71□□□□□ -1.33
PTPRB-206ENST00000548122 MRPL50Q8N5N7 158 aaKnown RBP6.71□□□□□ -1.33
PTPRB-206ENST00000548122 DBNDD1Q9H9R9 158 aa6.71□□□□□ -1.33
PTPRB-206ENST00000548122 AKAP2Q9Y2D5 859 aa6.71□□□□□ -1.33
PTPRB-206ENST00000548122 SRGNP10124 158 aa6.71□□□□□ -1.34
PTPRB-206ENST00000548122 IARSP41252 1262 aaKnown RBP6.71□□□□□ -1.34
PTPRB-206ENST00000548122 ZNF34Q8IZ26 560 aa6.71□□□□□ -1.34
PTPRB-206ENST00000548122 ANP32BQ92688 251 aaKnown RBP6.71□□□□□ -1.34
PTPRB-206ENST00000548122 SEC31BQ9NQW1 1179 aa6.71□□□□□ -1.34
PTPRB-206ENST00000548122 RGPD2P0DJD1 1756 aa6.71□□□□□ -1.34
PTPRB-206ENST00000548122 AMIGO3Q86WK7 504 aa6.71□□□□□ -1.34
PTPRB-206ENST00000548122 CRAMP1Q96RY5 1269 aa6.71□□□□□ -1.34
PTPRB-206ENST00000548122 VEZTQ9HBM0 779 aa6.71□□□□□ -1.34
PTPRB-206ENST00000548122 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.71□□□□□ -1.34
PTPRB-206ENST00000548122 AOC3Q16853 763 aa6.71□□□□□ -1.34
PTPRB-206ENST00000548122 CLASRPQ8N2M8 674 aaKnown RBP6.71□□□□□ -1.34
PTPRB-206ENST00000548122 UPF2Q9HAU5 1272 aaKnown RBP6.71□□□□□ -1.34
PTPRB-206ENST00000548122 JAG2Q9Y219 1238 aa6.71□□□□□ -1.34
PTPRB-206ENST00000548122 VEGFAP15692 232 aaPredicted RBP6.7□□□□□ -1.34
PTPRB-206ENST00000548122 DZIP1Q86YF9 867 aaKnown RBP6.7□□□□□ -1.34
PTPRB-206ENST00000548122 AMOTL1Q8IY63 956 aa6.7□□□□□ -1.34
PTPRB-206ENST00000548122 GREM2Q9H772 168 aa6.7□□□□□ -1.34
PTPRB-206ENST00000548122 RAI14Q9P0K7 980 aa6.7□□□□□ -1.34
PTPRB-206ENST00000548122 ABT1Q9ULW3 272 aaKnown RBP6.7□□□□□ -1.34
PTPRB-206ENST00000548122 XDHP47989 1333 aa6.7□□□□□ -1.34
PTPRB-206ENST00000548122 TAF5LO75529 589 aa6.7□□□□□ -1.34
PTPRB-206ENST00000548122 WDHD1O75717 1129 aaPredicted RBP6.7□□□□□ -1.34
PTPRB-206ENST00000548122 FKBP4Q02790 459 aaKnown RBP eCLIP6.7□□□□□ -1.34
PTPRB-206ENST00000548122 ERC1Q8IUD2 1116 aa6.7□□□□□ -1.34
PTPRB-206ENST00000548122 TMEM57Q8N5G2 664 aa6.7□□□□□ -1.34
PTPRB-206ENST00000548122 BCL2L12Q9HB09 334 aa6.7□□□□□ -1.34
PTPRB-206ENST00000548122 LRP2BPQ9P2M1 347 aa6.7□□□□□ -1.34
PTPRB-206ENST00000548122 NTSR2O95665 410 aa6.7□□□□□ -1.34
PTPRB-206ENST00000548122 NEFHP12036 1026 aa6.7□□□□□ -1.34
PTPRB-206ENST00000548122 DCPSQ96C86 337 aaKnown RBP6.7□□□□□ -1.34
PTPRB-206ENST00000548122 ZNF594Q96JF6 807 aaPredicted RBP6.7□□□□□ -1.34
PTPRB-206ENST00000548122 SULF1Q8IWU6 871 aa6.69□□□□□ -1.34
PTPRB-206ENST00000548122 SP8Q8IXZ3 490 aa6.69□□□□□ -1.34
PTPRB-206ENST00000548122 ISCA1Q9BUE6 129 aa6.69□□□□□ -1.34
PTPRB-206ENST00000548122 BICC1Q9H694 974 aaKnown RBP6.69□□□□□ -1.34
PTPRB-206ENST00000548122 RRAGCQ9HB90 399 aa6.69□□□□□ -1.34
PTPRB-206ENST00000548122 BTAF1O14981 1849 aa6.69□□□□□ -1.34
PTPRB-206ENST00000548122 ATP2B3Q16720 1220 aa6.69□□□□□ -1.34
PTPRB-206ENST00000548122 CELF1Q92879 486 aaKnown RBP6.69□□□□□ -1.34
PTPRB-206ENST00000548122 CWC22Q9HCG8 908 aaKnown RBP6.69□□□□□ -1.34
PTPRB-206ENST00000548122 ABCC4O15439 1325 aa6.69□□□□□ -1.34
PTPRB-206ENST00000548122 GTF2IP78347 998 aa6.69□□□□□ -1.34
PTPRB-206ENST00000548122 RWDD1Q9H446 243 aaPredicted RBP6.69□□□□□ -1.34
PTPRB-206ENST00000548122 HACL1Q9UJ83 578 aa6.69□□□□□ -1.34
PTPRB-206ENST00000548122 ATP6V0A2Q9Y487 856 aa6.69□□□□□ -1.34
PTPRB-206ENST00000548122 UBN2Q6ZU65 1347 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 TRIM27P14373 513 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 HIBADHP31937 336 aaKnown RBP6.68□□□□□ -1.34
PTPRB-206ENST00000548122 LRRFIP1Q32MZ4 808 aaKnown RBP6.68□□□□□ -1.34
PTPRB-206ENST00000548122 SLF2Q8IX21 1173 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 IPO4Q8TEX9 1081 aaKnown RBP6.68□□□□□ -1.34
PTPRB-206ENST00000548122 MEIS3Q99687 375 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 RGL2O15211 777 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 HSP90AA1P07900 732 aaKnown RBP6.68□□□□□ -1.34
PTPRB-206ENST00000548122 TRIM28Q13263 835 aaKnown RBP6.68□□□□□ -1.34
PTPRB-206ENST00000548122 TTLL5Q6EMB2 1281 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 SUCLG2Q96I99 432 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 GPR101Q96P66 508 aaPredicted RBP6.68□□□□□ -1.34
PTPRB-206ENST00000548122 DNAJC2Q99543 621 aaKnown RBP6.68□□□□□ -1.34
PTPRB-206ENST00000548122 ZNRF3Q9ULT6 936 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 ZNF804BA4D1E1 1349 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 TRIM6-TRIM34B2RNG4 842 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 NBPF7P0C2Y1 421 aaPredicted RBP6.68□□□□□ -1.34
PTPRB-206ENST00000548122 YBX3P16989 372 aaKnown RBP eCLIP6.68□□□□□ -1.34
PTPRB-206ENST00000548122 IL15P40933 162 aaPredicted RBP6.68□□□□□ -1.34
PTPRB-206ENST00000548122 CHRNDQ07001 517 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 MVPQ14764 893 aaKnown RBP6.68□□□□□ -1.34
PTPRB-206ENST00000548122 PDIA6Q15084 440 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 DLGAP5Q15398 846 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 KIAA0825Q8IV33 1275 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 ARHGAP45Q92619 1136 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 LEMD3Q9Y2U8 911 aa6.68□□□□□ -1.34
PTPRB-206ENST00000548122 NHSQ6T4R5 1651 aa6.67□□□□□ -1.34
PTPRB-206ENST00000548122 BEND3Q5T5X7 828 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms