RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 SPTLC3Q9NUV7 552 aa18.69■□□□□ 0.58
LDLR-204ENST00000545707 RESTQ13127 1097 aa18.68■□□□□ 0.58
LDLR-204ENST00000545707 KRT32Q14532 448 aa18.68■□□□□ 0.58
LDLR-204ENST00000545707 RABL6Q3YEC7 729 aaPredicted RBP18.68■□□□□ 0.58
LDLR-204ENST00000545707 FMNL2Q96PY5 1086 aa18.68■□□□□ 0.58
LDLR-204ENST00000545707 NRBP1Q9UHY1 535 aa18.68■□□□□ 0.58
LDLR-204ENST00000545707 CCT2P78371 535 aaKnown RBP18.67■□□□□ 0.58
LDLR-204ENST00000545707 CHST3Q7LGC8 479 aa18.67■□□□□ 0.58
LDLR-204ENST00000545707 DNAJC25Q9H1X3 360 aa18.67■□□□□ 0.58
LDLR-204ENST00000545707 NAP1L2Q9ULW6 460 aaPredicted RBP18.67■□□□□ 0.58
LDLR-204ENST00000545707 U3KPZ7 1027 aaPredicted RBP18.67■□□□□ 0.58
LDLR-204ENST00000545707 CASP7P55210 303 aa18.66■□□□□ 0.58
LDLR-204ENST00000545707 APOBRQ0VD83 1088 aa18.66■□□□□ 0.58
LDLR-204ENST00000545707 CLSTN2Q9H4D0 955 aa18.66■□□□□ 0.58
LDLR-204ENST00000545707 MRC1P22897 1456 aa18.66■□□□□ 0.58
LDLR-204ENST00000545707 CABP4P57796 275 aa18.66■□□□□ 0.58
LDLR-204ENST00000545707 ZNF594Q96JF6 807 aaPredicted RBP18.66■□□□□ 0.58
LDLR-204ENST00000545707 NCOA5Q9HCD5 579 aaKnown RBP18.66■□□□□ 0.58
LDLR-204ENST00000545707 LRMPQ12912 555 aa18.65■□□□□ 0.58
LDLR-204ENST00000545707 TTLL7Q6ZT98 887 aa18.65■□□□□ 0.58
LDLR-204ENST00000545707 CCDC186Q7Z3E2 898 aa18.65■□□□□ 0.58
LDLR-204ENST00000545707 KBTBD3Q8NAB2 608 aa18.65■□□□□ 0.58
LDLR-204ENST00000545707 A0A087WWV3 80 aa18.65■□□□□ 0.58
LDLR-204ENST00000545707 PDIA4P13667 645 aaKnown RBP18.65■□□□□ 0.58
LDLR-204ENST00000545707 DRC7Q8IY82 874 aa18.65■□□□□ 0.58
LDLR-204ENST00000545707 DCAF5Q96JK2 942 aa18.65■□□□□ 0.58
LDLR-204ENST00000545707 DDX19AQ9NUU7 478 aaKnown RBP18.65■□□□□ 0.58
LDLR-204ENST00000545707 NBPF26B4DH59 902 aa18.64■□□□□ 0.58
LDLR-204ENST00000545707 FOXO4P98177 505 aa18.64■□□□□ 0.58
LDLR-204ENST00000545707 GUCY1B3Q02153 619 aa18.64■□□□□ 0.58
LDLR-204ENST00000545707 NBPF14Q5TI25 921 aa18.64■□□□□ 0.58
LDLR-204ENST00000545707 NBPF10Q6P3W6 841 aaKnown RBP18.64■□□□□ 0.58
LDLR-204ENST00000545707 ATG9AQ7Z3C6 839 aa18.64■□□□□ 0.58
LDLR-204ENST00000545707 ZNF710Q8N1W2 664 aa18.64■□□□□ 0.58
LDLR-204ENST00000545707 NBPF15Q8N660 670 aa18.64■□□□□ 0.58
LDLR-204ENST00000545707 PRIMPOLQ96LW4 560 aa18.64■□□□□ 0.58
LDLR-204ENST00000545707 CTDNEP1O95476 244 aa18.64■□□□□ 0.57
LDLR-204ENST00000545707 LRRC24Q50LG9 513 aa18.64■□□□□ 0.57
LDLR-204ENST00000545707 TRIM5Q9C035 493 aa18.64■□□□□ 0.57
LDLR-204ENST00000545707 C1orf167Q5SNV9 1468 aa18.64■□□□□ 0.57
LDLR-204ENST00000545707 ZNF165P49910 485 aa18.63■□□□□ 0.57
LDLR-204ENST00000545707 MAP7D2Q96T17 732 aa18.63■□□□□ 0.57
LDLR-204ENST00000545707 PAG1Q9NWQ8 432 aa18.63■□□□□ 0.57
LDLR-204ENST00000545707 NSUN7Q8NE18 718 aaKnown RBP18.63■□□□□ 0.57
LDLR-204ENST00000545707 PLBD2Q8NHP8 589 aa18.63■□□□□ 0.57
LDLR-204ENST00000545707 ADAMTS7Q9UKP4 1686 aa18.63■□□□□ 0.57
LDLR-204ENST00000545707 CAMTA1Q9Y6Y1 1673 aa18.63■□□□□ 0.57
LDLR-204ENST00000545707 GOLGA6L6A8MZA4 724 aa18.62■□□□□ 0.57
LDLR-204ENST00000545707 RBM43Q6ZSC3 357 aaKnown RBP18.62■□□□□ 0.57
LDLR-204ENST00000545707 A1BGP04217 495 aa18.62■□□□□ 0.57
LDLR-204ENST00000545707 ADD1P35611 737 aaKnown RBP18.62■□□□□ 0.57
LDLR-204ENST00000545707 TTLL5Q6EMB2 1281 aa18.62■□□□□ 0.57
LDLR-204ENST00000545707 DHX32Q7L7V1 743 aaKnown RBP18.62■□□□□ 0.57
LDLR-204ENST00000545707 ZBTB3Q9H5J0 574 aa18.62■□□□□ 0.57
LDLR-204ENST00000545707 C19orf44Q9H6X5 657 aa18.62■□□□□ 0.57
LDLR-204ENST00000545707 PTPDC1A2A3K4 754 aa18.61■□□□□ 0.57
LDLR-204ENST00000545707 HMGN5P82970 282 aaKnown RBP18.61■□□□□ 0.57
LDLR-204ENST00000545707 PFKFB2O60825 505 aa18.61■□□□□ 0.57
LDLR-204ENST00000545707 ZNF75DP51815 510 aa18.61■□□□□ 0.57
LDLR-204ENST00000545707 SMARCC2Q8TAQ2 1214 aa18.61■□□□□ 0.57
LDLR-204ENST00000545707 ERCC4Q92889 916 aaPredicted RBP18.61■□□□□ 0.57
LDLR-204ENST00000545707 PUS3Q9BZE2 481 aaKnown RBP18.61■□□□□ 0.57
LDLR-204ENST00000545707 GPHNQ9NQX3 736 aaPredicted RBP18.61■□□□□ 0.57
LDLR-204ENST00000545707 TRPM3Q9HCF6 1732 aaPredicted RBP18.61■□□□□ 0.57
LDLR-204ENST00000545707 GOLPH3LQ9H4A5 285 aa18.6■□□□□ 0.57
LDLR-204ENST00000545707 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.6■□□□□ 0.57
LDLR-204ENST00000545707 E7EWF7 191 aa18.6■□□□□ 0.57
LDLR-204ENST00000545707 H7C1W4 665 aa18.6■□□□□ 0.57
LDLR-204ENST00000545707 HSPD1P10809 573 aaKnown RBP18.6■□□□□ 0.57
LDLR-204ENST00000545707 KLHL34Q8N239 644 aa18.6■□□□□ 0.57
LDLR-204ENST00000545707 USP28Q96RU2 1077 aa18.6■□□□□ 0.57
LDLR-204ENST00000545707 ZSCAN16Q9H4T2 348 aaPredicted RBP18.6■□□□□ 0.57
LDLR-204ENST00000545707 SCN11AQ9UI33 1791 aa18.59■□□□□ 0.57
LDLR-204ENST00000545707 RIOK3O14730 519 aaKnown RBP18.59■□□□□ 0.57
LDLR-204ENST00000545707 C11orf57Q6ZUT1 292 aaPredicted RBP18.59■□□□□ 0.57
LDLR-204ENST00000545707 CCAR1Q8IX12 1150 aaKnown RBP18.59■□□□□ 0.57
LDLR-204ENST00000545707 FBXW7Q969H0 707 aa18.59■□□□□ 0.57
LDLR-204ENST00000545707 CCDC85AQ96PX6 553 aaPredicted RBP18.59■□□□□ 0.57
LDLR-204ENST00000545707 CFAP45Q9UL16 551 aa18.59■□□□□ 0.57
LDLR-204ENST00000545707 KIF3AQ9Y496 699 aa18.59■□□□□ 0.57
LDLR-204ENST00000545707 SH3TC1Q8TE82 1336 aa18.59■□□□□ 0.57
LDLR-204ENST00000545707 TPM3P06753 285 aa18.59■□□□□ 0.57
LDLR-204ENST00000545707 PLA2G4DQ86XP0 818 aa18.59■□□□□ 0.57
LDLR-204ENST00000545707 TDRD7Q8NHU6 1098 aaKnown RBP18.59■□□□□ 0.57
LDLR-204ENST00000545707 EXOSC10Q01780 885 aaKnown RBP18.58■□□□□ 0.57
LDLR-204ENST00000545707 IFIT1P09914 478 aaKnown RBP18.58■□□□□ 0.56
LDLR-204ENST00000545707 GTF2F1P35269 517 aaKnown RBP eCLIP18.58■□□□□ 0.562e-14■□□□□ 9.4
LDLR-204ENST00000545707 CCDC144BQ3MJ40 725 aa18.58■□□□□ 0.56
LDLR-204ENST00000545707 ZMYM1Q5SVZ6 1142 aa18.58■□□□□ 0.56
LDLR-204ENST00000545707 OTUD7BQ6GQQ9 843 aa18.58■□□□□ 0.56
LDLR-204ENST00000545707 CCDC144CPQ8IYA2 1237 aa18.58■□□□□ 0.56
LDLR-204ENST00000545707 BCL2L12Q9HB09 334 aa18.58■□□□□ 0.56
LDLR-204ENST00000545707 CWC25Q9NXE8 425 aaPredicted RBP18.58■□□□□ 0.56
LDLR-204ENST00000545707 MAST3O60307 1309 aa18.57■□□□□ 0.56
LDLR-204ENST00000545707 A0A1B0GUL7 405 aa18.57■□□□□ 0.56
LDLR-204ENST00000545707 M0R2C6 588 aa18.57■□□□□ 0.56
LDLR-204ENST00000545707 HAND2P61296 217 aa18.57■□□□□ 0.56
LDLR-204ENST00000545707 FKBP4Q02790 459 aaKnown RBP eCLIP18.57■□□□□ 0.56
LDLR-204ENST00000545707 HSP90AB3PQ58FF7 597 aa18.57■□□□□ 0.56
LDLR-204ENST00000545707 ATF3P18847 181 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms