RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 KIF6Q6ZMV9 814 aa16.61■□□□□ 0.25
MSH2-206ENST00000543555 TMEM87AQ8NBN3 555 aa16.61■□□□□ 0.25
MSH2-206ENST00000543555 SEC62Q99442 399 aaKnown RBP16.61■□□□□ 0.25
MSH2-206ENST00000543555 STARD3NLO95772 234 aa16.61■□□□□ 0.25
MSH2-206ENST00000543555 F13A1P00488 732 aa16.61■□□□□ 0.25
MSH2-206ENST00000543555 USP48Q86UV5 1035 aa16.61■□□□□ 0.25
MSH2-206ENST00000543555 KRT32Q14532 448 aa16.6■□□□□ 0.25
MSH2-206ENST00000543555 CCDC129Q6ZRS4 1044 aa16.6■□□□□ 0.25
MSH2-206ENST00000543555 NECAB1Q8N987 351 aa16.6■□□□□ 0.25
MSH2-206ENST00000543555 U3KPZ7 1027 aaPredicted RBP16.6■□□□□ 0.25
MSH2-206ENST00000543555 SH3TC1Q8TE82 1336 aa16.6■□□□□ 0.25
MSH2-206ENST00000543555 PAG1Q9NWQ8 432 aa16.6■□□□□ 0.25
MSH2-206ENST00000543555 A0A1B0GUL7 405 aa16.59■□□□□ 0.25
MSH2-206ENST00000543555 GOLIM4O00461 696 aa16.59■□□□□ 0.25
MSH2-206ENST00000543555 LRSAM1Q6UWE0 723 aa16.59■□□□□ 0.25
MSH2-206ENST00000543555 PUS3Q9BZE2 481 aaKnown RBP16.59■□□□□ 0.25
MSH2-206ENST00000543555 SYCE3A1L190 88 aa16.59■□□□□ 0.25
MSH2-206ENST00000543555 GADD45BO75293 160 aaPredicted RBP16.59■□□□□ 0.25
MSH2-206ENST00000543555 PCCAP05165 728 aaPredicted RBP16.59■□□□□ 0.25
MSH2-206ENST00000543555 CCDC57Q2TAC2 916 aa16.59■□□□□ 0.25
MSH2-206ENST00000543555 TICAM2Q86XR7 235 aa16.59■□□□□ 0.25
MSH2-206ENST00000543555 TCEANC2Q96MN5 208 aa16.59■□□□□ 0.25
MSH2-206ENST00000543555 RBSNQ9H1K0 784 aa16.59■□□□□ 0.25
MSH2-206ENST00000543555 MTMR6Q9Y217 621 aa16.59■□□□□ 0.25
MSH2-206ENST00000543555 ATP6V1DQ9Y5K8 247 aa16.59■□□□□ 0.25
MSH2-206ENST00000543555 CCDC173Q0VFZ6 552 aa16.59■□□□□ 0.25
MSH2-206ENST00000543555 TOB2Q14106 344 aaPredicted RBP16.59■□□□□ 0.25
MSH2-206ENST00000543555 FBXO41Q8TF61 875 aa16.59■□□□□ 0.25
MSH2-206ENST00000543555 ITGB4P16144 1822 aa16.58■□□□□ 0.25
MSH2-206ENST00000543555 GOLGB1Q14789 3259 aaKnown RBP16.58■□□□□ 0.25
MSH2-206ENST00000543555 PLA2G12BQ9BX93 195 aa16.58■□□□□ 0.24
MSH2-206ENST00000543555 FBXO3Q9UK99 471 aa16.58■□□□□ 0.24
MSH2-206ENST00000543555 CNPY2Q9Y2B0 182 aa16.58■□□□□ 0.24
MSH2-206ENST00000543555 MAP3K15Q6ZN16 1313 aa16.58■□□□□ 0.24
MSH2-206ENST00000543555 BCL9O00512 1426 aa16.58■□□□□ 0.24
MSH2-206ENST00000543555 SEPT12Q8IYM1 358 aa16.58■□□□□ 0.24
MSH2-206ENST00000543555 SYAP1Q96A49 352 aaPredicted RBP16.58■□□□□ 0.24
MSH2-206ENST00000543555 TRPC5Q9UL62 973 aaPredicted RBP16.58■□□□□ 0.24
MSH2-206ENST00000543555 DTNBO60941 627 aa16.57■□□□□ 0.24
MSH2-206ENST00000543555 ZBTB38Q8NAP3 1195 aaPredicted RBP16.57■□□□□ 0.24
MSH2-206ENST00000543555 ANP32BQ92688 251 aaKnown RBP16.57■□□□□ 0.24
MSH2-206ENST00000543555 FAM89AQ96GI7 184 aa16.57■□□□□ 0.24
MSH2-206ENST00000543555 PPP1R9BQ96SB3 815 aa16.57■□□□□ 0.24
MSH2-206ENST00000543555 HELLSQ9NRZ9 838 aa16.57■□□□□ 0.24
MSH2-206ENST00000543555 CEP126Q9P2H0 1117 aa16.57■□□□□ 0.24
MSH2-206ENST00000543555 NRAPQ86VF7 1730 aa16.57■□□□□ 0.24
MSH2-206ENST00000543555 SRCAPQ6ZRS2 3230 aa16.57■□□□□ 0.24
MSH2-206ENST00000543555 IFIT1P09914 478 aaKnown RBP16.57■□□□□ 0.24
MSH2-206ENST00000543555 GIGYF2Q6Y7W6 1299 aaKnown RBP16.57■□□□□ 0.24
MSH2-206ENST00000543555 NEK1Q96PY6 1258 aa16.57■□□□□ 0.24
MSH2-206ENST00000543555 THRAP3Q9Y2W1 955 aaKnown RBP16.56■□□□□ 0.24
MSH2-206ENST00000543555 CSF1RP07333 972 aa16.56■□□□□ 0.24
MSH2-206ENST00000543555 CYP21A2P08686 494 aa16.56■□□□□ 0.24
MSH2-206ENST00000543555 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.56■□□□□ 0.24
MSH2-206ENST00000543555 TRIM44Q96DX7 344 aaPredicted RBP16.56■□□□□ 0.24
MSH2-206ENST00000543555 ZMYM1Q5SVZ6 1142 aa16.56■□□□□ 0.24
MSH2-206ENST00000543555 BARGINQ6ZT62 677 aa16.56■□□□□ 0.24
MSH2-206ENST00000543555 SLC4A9Q96Q91 983 aa16.56■□□□□ 0.24
MSH2-206ENST00000543555 CYP19A1P11511 503 aaPredicted RBP16.55■□□□□ 0.24
MSH2-206ENST00000543555 PDIA4P13667 645 aaKnown RBP16.55■□□□□ 0.24
MSH2-206ENST00000543555 SPEF2Q9C093 1822 aa16.55■□□□□ 0.24
MSH2-206ENST00000543555 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.55■□□□□ 0.24
MSH2-206ENST00000543555 HLFQ16534 295 aa16.55■□□□□ 0.24
MSH2-206ENST00000543555 AKAP2Q9Y2D5 859 aa16.55■□□□□ 0.24
MSH2-206ENST00000543555 CDHR2Q9BYE9 1310 aa16.54■□□□□ 0.24
MSH2-206ENST00000543555 VPS37CA5D8V6 355 aaPredicted RBP16.54■□□□□ 0.24
MSH2-206ENST00000543555 SLFNL1Q499Z3 407 aa16.54■□□□□ 0.24
MSH2-206ENST00000543555 DSCC1Q9BVC3 393 aa16.54■□□□□ 0.24
MSH2-206ENST00000543555 IFIT5Q13325 482 aaKnown RBP16.54■□□□□ 0.24
MSH2-206ENST00000543555 HSP90AB3PQ58FF7 597 aa16.54■□□□□ 0.24
MSH2-206ENST00000543555 LARP1BQ659C4 914 aaKnown RBP16.54■□□□□ 0.24
MSH2-206ENST00000543555 CCDC85AQ96PX6 553 aaPredicted RBP16.54■□□□□ 0.24
MSH2-206ENST00000543555 TAF7LQ5H9L4 462 aa16.54■□□□□ 0.24
MSH2-206ENST00000543555 NLRP10Q86W26 655 aa16.54■□□□□ 0.24
MSH2-206ENST00000543555 TCHHQ07283 1943 aa16.53■□□□□ 0.24
MSH2-206ENST00000543555 PHF14O94880 888 aa16.53■□□□□ 0.24
MSH2-206ENST00000543555 PDCP20941 246 aa16.53■□□□□ 0.24
MSH2-206ENST00000543555 UBE2HP62256 183 aa16.53■□□□□ 0.24
MSH2-206ENST00000543555 CCDC158Q5M9N0 1113 aa16.53■□□□□ 0.24
MSH2-206ENST00000543555 RNF113AO15541 343 aaKnown RBP16.53■□□□□ 0.24
MSH2-206ENST00000543555 FIBPO43427 364 aa16.53■□□□□ 0.24
MSH2-206ENST00000543555 GPTP24298 496 aa16.53■□□□□ 0.24
MSH2-206ENST00000543555 XAGE2Q96GT9 111 aa16.53■□□□□ 0.24
MSH2-206ENST00000543555 ZBTB1Q9Y2K1 713 aa16.53■□□□□ 0.24
MSH2-206ENST00000543555 ADORA1P30542 326 aa16.52■□□□□ 0.24
MSH2-206ENST00000543555 DNM1Q05193 864 aaKnown RBP16.52■□□□□ 0.24
MSH2-206ENST00000543555 CSPP1Q1MSJ5 1256 aa16.52■□□□□ 0.24
MSH2-206ENST00000543555 SMIM5Q71RC9 77 aa16.52■□□□□ 0.24
MSH2-206ENST00000543555 RGS17Q9UGC6 210 aaPredicted RBP16.52■□□□□ 0.24
MSH2-206ENST00000543555 MAST3O60307 1309 aa16.52■□□□□ 0.24
MSH2-206ENST00000543555 STK3Q13188 491 aa16.52■□□□□ 0.23
MSH2-206ENST00000543555 TTC39AQ5SRH9 613 aa16.52■□□□□ 0.23
MSH2-206ENST00000543555 GORABQ5T7V8 394 aa16.52■□□□□ 0.23
MSH2-206ENST00000543555 Q6ZUG5 572 aa16.52■□□□□ 0.23
MSH2-206ENST00000543555 STOX1Q6ZVD7 989 aa16.52■□□□□ 0.23
MSH2-206ENST00000543555 SYNE4Q8N205 404 aa16.52■□□□□ 0.23
MSH2-206ENST00000543555 ESPNB1AK53 854 aa16.51■□□□□ 0.23
MSH2-206ENST00000543555 RIC1Q4ADV7 1423 aa16.51■□□□□ 0.23
MSH2-206ENST00000543555 GTF3C6Q969F1 213 aa16.51■□□□□ 0.23
MSH2-206ENST00000543555 HMGB1P09429 215 aaKnown RBP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms