RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 TSG101Q99816 390 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 YIPF3Q9GZM5 350 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 EID1Q9Y6B2 187 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 WDR97A6NE52 1622 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 INF2Q27J81 1249 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 HAUS1Q96CS2 278 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 CHUKO15111 745 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 CCT4P50991 539 aaKnown RBP9.93□□□□□ -0.82
YBX3-208ENST00000540447 DYNC1I2Q13409 638 aaKnown RBP9.93□□□□□ -0.82
YBX3-208ENST00000540447 HSP90AA4PQ58FG1 418 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 RUFY4Q6ZNE9 571 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 ZSCAN16Q9H4T2 348 aaPredicted RBP9.93□□□□□ -0.82
YBX3-208ENST00000540447 NKTRP30414 1462 aaKnown RBP9.93□□□□□ -0.82
YBX3-208ENST00000540447 ZNF131P52739 623 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 ANAPC15P60006 121 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 PDE11AQ9HCR9 933 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 NKIRAS1Q9NYS0 192 aa9.93□□□□□ -0.82
YBX3-208ENST00000540447 MACROD2A1Z1Q3 448 aa9.92□□□□□ -0.82
YBX3-208ENST00000540447 EFCAB8A8MWE9 144 aa9.92□□□□□ -0.82
YBX3-208ENST00000540447 STMN1P16949 149 aa9.92□□□□□ -0.82
YBX3-208ENST00000540447 TRIM21P19474 475 aaKnown RBP9.92□□□□□ -0.82
YBX3-208ENST00000540447 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.92□□□□□ -0.82
YBX3-208ENST00000540447 GOLGA8KD6RF30 607 aa9.92□□□□□ -0.82
YBX3-208ENST00000540447 HSP90AA5PQ58FG0 334 aa9.92□□□□□ -0.82
YBX3-208ENST00000540447 LTV1Q96GA3 475 aaPredicted RBP9.92□□□□□ -0.82
YBX3-208ENST00000540447 EVC2Q86UK5 1308 aa9.92□□□□□ -0.82
YBX3-208ENST00000540447 HGSO14964 777 aaPredicted RBP9.92□□□□□ -0.82
YBX3-208ENST00000540447 RNF8O76064 485 aa9.92□□□□□ -0.82
YBX3-208ENST00000540447 TNNC1P63316 161 aa9.92□□□□□ -0.82
YBX3-208ENST00000540447 EIF3CLB5ME19 914 aaKnown RBP9.92□□□□□ -0.82
YBX3-208ENST00000540447 PRC1O43663 620 aa9.92□□□□□ -0.82
YBX3-208ENST00000540447 HMOX1P09601 288 aa9.92□□□□□ -0.82
YBX3-208ENST00000540447 PDCD2Q16342 344 aaPredicted RBP9.92□□□□□ -0.82
YBX3-208ENST00000540447 EIF3CQ99613 913 aaKnown RBP9.92□□□□□ -0.82
YBX3-208ENST00000540447 ZNF513Q8N8E2 541 aaPredicted RBP9.92□□□□□ -0.82
YBX3-208ENST00000540447 DDX54Q8TDD1 881 aaKnown RBP9.92□□□□□ -0.82
YBX3-208ENST00000540447 COG3Q96JB2 828 aa9.92□□□□□ -0.82
YBX3-208ENST00000540447 RBM42Q9BTD8 480 aaKnown RBP9.92□□□□□ -0.82
YBX3-208ENST00000540447 DDX21Q9NR30 783 aaKnown RBP eCLIP9.92□□□□□ -0.82
YBX3-208ENST00000540447 PPP1R9AQ9ULJ8 1098 aa9.92□□□□□ -0.82
YBX3-208ENST00000540447 MTMR7Q9Y216 660 aa9.92□□□□□ -0.82
YBX3-208ENST00000540447 SMARCA5O60264 1052 aaPredicted RBP9.91□□□□□ -0.82
YBX3-208ENST00000540447 KANK3Q6NY19 840 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 ARMCX6Q7L4S7 300 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 CHMP7Q8WUX9 453 aaPredicted RBP9.91□□□□□ -0.82
YBX3-208ENST00000540447 FAM204AQ9H8W3 233 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 GNL3LQ9NVN8 582 aaKnown RBP9.91□□□□□ -0.82
YBX3-208ENST00000540447 SCOCQ9UIL1 159 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 RARSP54136 660 aaKnown RBP9.91□□□□□ -0.82
YBX3-208ENST00000540447 PRR16Q569H4 304 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 XAB2Q9HCS7 855 aaKnown RBP9.91□□□□□ -0.82
YBX3-208ENST00000540447 SEC24BO95487 1268 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 ATP5DP30049 168 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 MTHFSP49914 203 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 RASSF2P50749 326 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 ZSCAN25Q6NSZ9 544 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 SND1Q7KZF4 910 aaKnown RBP eCLIP9.91□□□□□ -0.82
YBX3-208ENST00000540447 CCDC63Q8NA47 563 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 SPDL1Q96EA4 605 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 SCAPERQ9BY12 1400 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 CCDC88BA6NC98 1476 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 SYKP43405 635 aa9.91□□□□□ -0.82
YBX3-208ENST00000540447 ZWINTO95229 277 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 FLIIQ13045 1269 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 TAF11Q15544 211 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 GRIPAP1Q4V328 841 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 FYB2Q5VWT5 728 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 VPS52Q8N1B4 723 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 MRPS27Q92552 414 aaKnown RBP9.9□□□□□ -0.82
YBX3-208ENST00000540447 THEGQ9P2T0 379 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 IMPACTQ9P2X3 320 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 IL1RAPL2Q9NP60 686 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 AMOTQ4VCS5 1084 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 C8orf74Q6P047 294 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 IFT20Q8IY31 132 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 NBPF3Q9H094 633 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 PLEKHA4Q9H4M7 779 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 MTRF1LQ9UGC7 380 aaKnown RBP9.9□□□□□ -0.82
YBX3-208ENST00000540447 CARMIL1Q5VZK9 1371 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 CSB-PGBD3P0DP91 1061 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 GUCY2CP25092 1073 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 NUF2Q9BZD4 464 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 TBC1D2BQ9UPU7 963 aa9.9□□□□□ -0.82
YBX3-208ENST00000540447 ATP2A2P16615 1042 aaKnown RBP9.9□□□□□ -0.83
YBX3-208ENST00000540447 NUCB1Q02818 461 aa9.9□□□□□ -0.83
YBX3-208ENST00000540447 ZGPATQ8N5A5 531 aaKnown RBP9.9□□□□□ -0.83
YBX3-208ENST00000540447 PAIP2BQ9ULR5 123 aaKnown RBP9.9□□□□□ -0.83
YBX3-208ENST00000540447 POTEJP0CG39 1038 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 SF3A3Q12874 501 aaKnown RBP eCLIP9.89□□□□□ -0.83
YBX3-208ENST00000540447 IFT88Q13099 833 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 CTNNA3Q9UI47 895 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 DDX41Q9UJV9 622 aaKnown RBP9.89□□□□□ -0.83
YBX3-208ENST00000540447 MTUS1Q9ULD2 1270 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 FAN1Q9Y2M0 1017 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 SPAG1Q07617 926 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 SF3B2Q13435 895 aaKnown RBP9.89□□□□□ -0.83
YBX3-208ENST00000540447 CCDC62Q6P9F0 684 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 GAS2L3Q86XJ1 694 aa9.89□□□□□ -0.83
YBX3-208ENST00000540447 PHAXQ9H814 394 aaKnown RBP9.89□□□□□ -0.83
YBX3-208ENST00000540447 ATG3Q9NT62 314 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 239.9 ms