RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ZSCAN30Q86W11 494 aa20.09■□□□□ 0.81
USP28-208ENST00000540438 HAUS7Q99871 368 aa20.09■□□□□ 0.81
USP28-208ENST00000540438 TTC12Q9H892 705 aaPredicted RBP20.09■□□□□ 0.81
USP28-208ENST00000540438 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.09■□□□□ 0.81
USP28-208ENST00000540438 USP54Q70EL1 1684 aa20.08■□□□□ 0.81
USP28-208ENST00000540438 HIP1O00291 1037 aa20.08■□□□□ 0.8
USP28-208ENST00000540438 RXRAP19793 462 aa20.08■□□□□ 0.8
USP28-208ENST00000540438 OSBP2Q969R2 916 aa20.08■□□□□ 0.8
USP28-208ENST00000540438 INCENPQ9NQS7 918 aa20.08■□□□□ 0.8
USP28-208ENST00000540438 CEP126Q9P2H0 1117 aa20.08■□□□□ 0.8
USP28-208ENST00000540438 R3HCC1Q9Y3T6 440 aaKnown RBP20.08■□□□□ 0.8
USP28-208ENST00000540438 MED23Q9ULK4 1368 aa20.08■□□□□ 0.8
USP28-208ENST00000540438 EYA2O00167 538 aa20.08■□□□□ 0.8
USP28-208ENST00000540438 ZNF142P52746 1687 aaPredicted RBP20.07■□□□□ 0.8
USP28-208ENST00000540438 H3BQV1 296 aa20.07■□□□□ 0.8
USP28-208ENST00000540438 ZAP70P43403 619 aa20.07■□□□□ 0.8
USP28-208ENST00000540438 IFFO2Q5TF58 517 aa20.07■□□□□ 0.8
USP28-208ENST00000540438 KBTBD3Q8NAB2 608 aa20.07■□□□□ 0.8
USP28-208ENST00000540438 SCRN1Q12765 414 aa20.07■□□□□ 0.8
USP28-208ENST00000540438 GREM2Q9H772 168 aa20.07■□□□□ 0.8
USP28-208ENST00000540438 GOLGA6L4A6NEF3 574 aa20.06■□□□□ 0.8
USP28-208ENST00000540438 UBE2HP62256 183 aa20.06■□□□□ 0.8
USP28-208ENST00000540438 TTC39AQ5SRH9 613 aa20.06■□□□□ 0.8
USP28-208ENST00000540438 NKX2-3Q8TAU0 364 aa20.06■□□□□ 0.8
USP28-208ENST00000540438 SYAP1Q96A49 352 aaPredicted RBP20.06■□□□□ 0.8
USP28-208ENST00000540438 XAGE2Q96GT9 111 aa20.06■□□□□ 0.8
USP28-208ENST00000540438 ZSCAN31Q96LW9 406 aaPredicted RBP20.06■□□□□ 0.8
USP28-208ENST00000540438 SLC4A9Q96Q91 983 aa20.06■□□□□ 0.8
USP28-208ENST00000540438 SH2B1Q9NRF2 756 aaPredicted RBP20.06■□□□□ 0.8
USP28-208ENST00000540438 IQSEC3Q9UPP2 1182 aaPredicted RBP20.06■□□□□ 0.8
USP28-208ENST00000540438 ZBTB1Q9Y2K1 713 aa20.06■□□□□ 0.8
USP28-208ENST00000540438 TM6SF1Q9BZW5 370 aa20.05■□□□□ 0.8
USP28-208ENST00000540438 HSPD1P10809 573 aaKnown RBP20.05■□□□□ 0.8
USP28-208ENST00000540438 CCDC183Q5T5S1 534 aa20.05■□□□□ 0.8
USP28-208ENST00000540438 FAM184AQ8NB25 1140 aa20.05■□□□□ 0.8
USP28-208ENST00000540438 DACT1Q9NYF0 836 aa20.05■□□□□ 0.8
USP28-208ENST00000540438 AP5Z1O43299 807 aa20.05■□□□□ 0.8
USP28-208ENST00000540438 CCDC144CPQ8IYA2 1237 aa20.05■□□□□ 0.8
USP28-208ENST00000540438 ATG3Q9NT62 314 aa20.05■□□□□ 0.8
USP28-208ENST00000540438 MAST3O60307 1309 aa20.04■□□□□ 0.8
USP28-208ENST00000540438 NUTM2BA6NNL0 878 aaPredicted RBP20.04■□□□□ 0.8
USP28-208ENST00000540438 NUTM2EB1AL46 878 aaPredicted RBP20.04■□□□□ 0.8
USP28-208ENST00000540438 RBM10P98175 930 aaKnown RBP20.04■□□□□ 0.8
USP28-208ENST00000540438 NUTM2AQ8IVF1 878 aaPredicted RBP20.04■□□□□ 0.8
USP28-208ENST00000540438 SPATA32Q96LK8 384 aa20.04■□□□□ 0.8
USP28-208ENST00000540438 PUS7LQ9H0K6 701 aaKnown RBP20.04■□□□□ 0.8
USP28-208ENST00000540438 LDHAL6AQ6ZMR3 332 aa20.04■□□□□ 0.8
USP28-208ENST00000540438 BICD2Q8TD16 824 aa20.04■□□□□ 0.8
USP28-208ENST00000540438 ADCY5O95622 1261 aa20.03■□□□□ 0.8
USP28-208ENST00000540438 APPP05067 770 aa20.03■□□□□ 0.8
USP28-208ENST00000540438 METTL24Q5JXM2 366 aa20.03■□□□□ 0.8
USP28-208ENST00000540438 ALS2Q96Q42 1657 aa20.03■□□□□ 0.8
USP28-208ENST00000540438 CNNM1Q9NRU3 951 aa20.03■□□□□ 0.8
USP28-208ENST00000540438 OVOS2A0A0G2JMS6 1433 aa20.03■□□□□ 0.8
USP28-208ENST00000540438 SCN11AQ9UI33 1791 aa20.03■□□□□ 0.8
USP28-208ENST00000540438 IDH1O75874 414 aaKnown RBP20.02■□□□□ 0.8
USP28-208ENST00000540438 TCIRG1Q13488 830 aa20.02■□□□□ 0.8
USP28-208ENST00000540438 IL17RAQ96F46 866 aa20.02■□□□□ 0.8
USP28-208ENST00000540438 TRMT112Q9UI30 125 aaKnown RBP20.02■□□□□ 0.8
USP28-208ENST00000540438 WTIPA6NIX2 430 aaPredicted RBP20.02■□□□□ 0.8
USP28-208ENST00000540438 IL15P40933 162 aaPredicted RBP20.02■□□□□ 0.8
USP28-208ENST00000540438 LUZP1Q86V48 1076 aa20.02■□□□□ 0.8
USP28-208ENST00000540438 E7EWF7 191 aa20.02■□□□□ 0.79
USP28-208ENST00000540438 KRT85P78386 507 aa20.02■□□□□ 0.79
USP28-208ENST00000540438 KIF6Q6ZMV9 814 aa20.02■□□□□ 0.79
USP28-208ENST00000540438 CCDC191Q8NCU4 936 aa20.02■□□□□ 0.79
USP28-208ENST00000540438 KCNB2Q92953 911 aa20.02■□□□□ 0.79
USP28-208ENST00000540438 ERVV-2B6SEH9 535 aa20.01■□□□□ 0.79
USP28-208ENST00000540438 IFIT5Q13325 482 aaKnown RBP20.01■□□□□ 0.79
USP28-208ENST00000540438 CARD10Q9BWT7 1032 aa20.01■□□□□ 0.79
USP28-208ENST00000540438 ATP6V1DQ9Y5K8 247 aa20.01■□□□□ 0.79
USP28-208ENST00000540438 SIPA1L3O60292 1781 aaPredicted RBP20.01■□□□□ 0.79
USP28-208ENST00000540438 NR1I2O75469 434 aa20.01■□□□□ 0.79
USP28-208ENST00000540438 ITGA6P23229 1130 aa20.01■□□□□ 0.79
USP28-208ENST00000540438 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20■□□□□ 0.79
USP28-208ENST00000540438 AFDNP55196 1824 aaKnown RBP20■□□□□ 0.79
USP28-208ENST00000540438 TSC1Q92574 1164 aa20■□□□□ 0.79
USP28-208ENST00000540438 GTF3C6Q969F1 213 aa20■□□□□ 0.79
USP28-208ENST00000540438 POLR3DP05423 398 aaPredicted RBP20■□□□□ 0.79
USP28-208ENST00000540438 CCDC24Q8N4L8 307 aa20■□□□□ 0.79
USP28-208ENST00000540438 PDLIM2Q96JY6 352 aa20■□□□□ 0.79
USP28-208ENST00000540438 N4BP2Q86UW6 1770 aaPredicted RBP19.99■□□□□ 0.79
USP28-208ENST00000540438 DNTTIP2Q5QJE6 756 aaKnown RBP19.99■□□□□ 0.79
USP28-208ENST00000540438 CHMP4CQ96CF2 233 aa19.99■□□□□ 0.79
USP28-208ENST00000540438 U3KPZ7 1027 aaPredicted RBP19.99■□□□□ 0.79
USP28-208ENST00000540438 COL5A2P05997 1499 aaPredicted RBP19.99■□□□□ 0.79
USP28-208ENST00000540438 RNF113AO15541 343 aaKnown RBP19.99■□□□□ 0.79
USP28-208ENST00000540438 CTDNEP1O95476 244 aa19.99■□□□□ 0.79
USP28-208ENST00000540438 CCDC158Q5M9N0 1113 aa19.99■□□□□ 0.79
USP28-208ENST00000540438 PGBD1Q96JS3 809 aa19.99■□□□□ 0.79
USP28-208ENST00000540438 PTPDC1A2A3K4 754 aa19.98■□□□□ 0.79
USP28-208ENST00000540438 PHRF1Q9P1Y6 1649 aaKnown RBP19.98■□□□□ 0.79
USP28-208ENST00000540438 COL18A1P39060 1754 aa19.98■□□□□ 0.79
USP28-208ENST00000540438 UBE2Q2LH0YL09 131 aa19.97■□□□□ 0.79
USP28-208ENST00000540438 LEO1Q8WVC0 666 aaPredicted RBP19.97■□□□□ 0.79
USP28-208ENST00000540438 SEC31BQ9NQW1 1179 aa19.97■□□□□ 0.79
USP28-208ENST00000540438 EPB41L2O43491 1005 aaKnown RBP19.97■□□□□ 0.79
USP28-208ENST00000540438 FGAP02671 866 aa19.97■□□□□ 0.79
USP28-208ENST00000540438 CCDC82Q8N4S0 544 aa19.97■□□□□ 0.79
USP28-208ENST00000540438 AIFM3Q96NN9 605 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms