RNA–Protein interactions for RNA: ENST00000539827.5

HOMER3-204, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-204ENST00000539827 CCDC158Q5M9N0 1113 aa27.09■■□□□ 1.93
HOMER3-204ENST00000539827 IL17RAQ96F46 866 aa27.09■■□□□ 1.93
HOMER3-204ENST00000539827 BRWD3Q6RI45 1802 aa27.09■■□□□ 1.93
HOMER3-204ENST00000539827 CCDC171Q6TFL3 1326 aa27.08■■□□□ 1.93
HOMER3-204ENST00000539827 ZPR1O75312 459 aa27.08■■□□□ 1.93
HOMER3-204ENST00000539827 HSP90B1P14625 803 aaKnown RBP27.08■■□□□ 1.93
HOMER3-204ENST00000539827 SNX14Q9Y5W7 946 aa27.08■■□□□ 1.93
HOMER3-204ENST00000539827 VGLL2Q8N8G2 317 aa27.08■■□□□ 1.92
HOMER3-204ENST00000539827 KBTBD3Q8NAB2 608 aa27.08■■□□□ 1.92
HOMER3-204ENST00000539827 ARHGEF1Q92888 912 aaKnown RBP27.08■■□□□ 1.92
HOMER3-204ENST00000539827 SNRKQ9NRH2 765 aa27.08■■□□□ 1.92
HOMER3-204ENST00000539827 CHMP5Q9NZZ3 219 aa27.08■■□□□ 1.92
HOMER3-204ENST00000539827 LAMB2P55268 1798 aa27.07■■□□□ 1.92
HOMER3-204ENST00000539827 FAM196AQ6ZSG2 479 aa27.07■■□□□ 1.92
HOMER3-204ENST00000539827 RASEFQ8IZ41 740 aa27.07■■□□□ 1.92
HOMER3-204ENST00000539827 HELBQ8NG08 1087 aaPredicted RBP27.07■■□□□ 1.92
HOMER3-204ENST00000539827 LRRC4BQ9NT99 713 aa27.07■■□□□ 1.92
HOMER3-204ENST00000539827 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.06■■□□□ 1.92
HOMER3-204ENST00000539827 RFX7Q2KHR2 1363 aa27.06■■□□□ 1.92
HOMER3-204ENST00000539827 MED23Q9ULK4 1368 aa27.06■■□□□ 1.92
HOMER3-204ENST00000539827 PHF14O94880 888 aa27.06■■□□□ 1.92
HOMER3-204ENST00000539827 ZNF589Q86UQ0 364 aaPredicted RBP27.06■■□□□ 1.92
HOMER3-204ENST00000539827 C4BP0C0L5 1744 aa27.06■■□□□ 1.92
HOMER3-204ENST00000539827 LRP5O75197 1615 aa27.05■■□□□ 1.92
HOMER3-204ENST00000539827 RGL2O15211 777 aa27.05■■□□□ 1.92
HOMER3-204ENST00000539827 PDE8BO95263 885 aa27.05■■□□□ 1.92
HOMER3-204ENST00000539827 PRPF40BQ6NWY9 871 aaKnown RBP27.05■■□□□ 1.92
HOMER3-204ENST00000539827 MPHOSPH8Q99549 860 aa27.05■■□□□ 1.92
HOMER3-204ENST00000539827 UPF3BQ9BZI7 483 aaKnown RBP27.05■■□□□ 1.92
HOMER3-204ENST00000539827 DDIT3P35638 169 aa27.04■■□□□ 1.92
HOMER3-204ENST00000539827 C3orf67Q6ZVT6 689 aa27.04■■□□□ 1.92
HOMER3-204ENST00000539827 TRIM37O94972 964 aa27.04■■□□□ 1.92
HOMER3-204ENST00000539827 FKBP4Q02790 459 aaKnown RBP eCLIP27.04■■□□□ 1.92
HOMER3-204ENST00000539827 SEC62Q99442 399 aaKnown RBP27.04■■□□□ 1.92
HOMER3-204ENST00000539827 RBM8AQ9Y5S9 174 aaKnown RBP27.04■■□□□ 1.92
HOMER3-204ENST00000539827 MROH5Q6ZUA9 1318 aa27.04■■□□□ 1.92
HOMER3-204ENST00000539827 FRAT2O75474 233 aaPredicted RBP27.03■■□□□ 1.92
HOMER3-204ENST00000539827 GTF2E1P29083 439 aaPredicted RBP27.03■■□□□ 1.92
HOMER3-204ENST00000539827 SCARF1Q14162 830 aa27.03■■□□□ 1.92
HOMER3-204ENST00000539827 SETDB2Q96T68 719 aa27.03■■□□□ 1.92
HOMER3-204ENST00000539827 KCNJ4P48050 445 aa27.02■■□□□ 1.92
HOMER3-204ENST00000539827 SLFNL1Q499Z3 407 aa27.02■■□□□ 1.92
HOMER3-204ENST00000539827 CCDC129Q6ZRS4 1044 aa27.02■■□□□ 1.92
HOMER3-204ENST00000539827 MAP4K1Q92918 833 aa27.02■■□□□ 1.92
HOMER3-204ENST00000539827 RTL9Q8NET4 1388 aa27.02■■□□□ 1.92
HOMER3-204ENST00000539827 IGHMBP2P38935 993 aaKnown RBP27.02■■□□□ 1.92
HOMER3-204ENST00000539827 TRAPPC3LQ5T215 181 aa27.02■■□□□ 1.92
HOMER3-204ENST00000539827 SPEF2Q9C093 1822 aa27.02■■□□□ 1.92
HOMER3-204ENST00000539827 NECTIN1Q15223 517 aa27.01■■□□□ 1.91
HOMER3-204ENST00000539827 RFC4P35249 363 aa27■■□□□ 1.91
HOMER3-204ENST00000539827 NOL8Q76FK4 1167 aaKnown RBP27■■□□□ 1.91
HOMER3-204ENST00000539827 TAF5LO75529 589 aa27■■□□□ 1.91
HOMER3-204ENST00000539827 MCMDC2Q4G0Z9 681 aa27■■□□□ 1.91
HOMER3-204ENST00000539827 ABCC12Q96J65 1359 aa27■■□□□ 1.91
HOMER3-204ENST00000539827 ZAP70P43403 619 aa26.99■■□□□ 1.91
HOMER3-204ENST00000539827 PUM3Q15397 648 aaKnown RBP26.99■■□□□ 1.91
HOMER3-204ENST00000539827 CREB3L3Q68CJ9 461 aa26.99■■□□□ 1.91
HOMER3-204ENST00000539827 KCNB2Q92953 911 aa26.99■■□□□ 1.91
HOMER3-204ENST00000539827 FGFR2P21802 821 aa26.98■■□□□ 1.91
HOMER3-204ENST00000539827 PI16Q6UXB8 463 aa26.98■■□□□ 1.91
HOMER3-204ENST00000539827 NBPF5PQ86XG9 351 aaPredicted RBP26.98■■□□□ 1.91
HOMER3-204ENST00000539827 CCDC24Q8N4L8 307 aa26.98■■□□□ 1.91
HOMER3-204ENST00000539827 NYXQ9GZU5 481 aa26.98■■□□□ 1.91
HOMER3-204ENST00000539827 COL4A1P02462 1669 aa26.98■■□□□ 1.91
HOMER3-204ENST00000539827 SNAP23O00161 211 aa26.98■■□□□ 1.91
HOMER3-204ENST00000539827 RBM6P78332 1123 aaKnown RBP26.98■■□□□ 1.91
HOMER3-204ENST00000539827 SF3B3Q15393 1217 aaKnown RBP26.98■■□□□ 1.91
HOMER3-204ENST00000539827 SLC10A5Q5PT55 438 aa26.98■■□□□ 1.91
HOMER3-204ENST00000539827 ZNF772Q68DY9 489 aaPredicted RBP26.98■■□□□ 1.91
HOMER3-204ENST00000539827 LPIN2Q92539 896 aa26.98■■□□□ 1.91
HOMER3-204ENST00000539827 C4AP0C0L4 1744 aa26.97■■□□□ 1.91
HOMER3-204ENST00000539827 MCM2P49736 904 aa26.97■■□□□ 1.91
HOMER3-204ENST00000539827 SLC27A2O14975 620 aa26.97■■□□□ 1.91
HOMER3-204ENST00000539827 RNF113AO15541 343 aaKnown RBP26.97■■□□□ 1.91
HOMER3-204ENST00000539827 CDC5LQ99459 802 aaKnown RBP26.97■■□□□ 1.91
HOMER3-204ENST00000539827 CPA1P15085 419 aa26.96■■□□□ 1.91
HOMER3-204ENST00000539827 MCAMP43121 646 aa26.96■■□□□ 1.91
HOMER3-204ENST00000539827 PHKA1P46020 1223 aa26.96■■□□□ 1.91
HOMER3-204ENST00000539827 ADCK5Q3MIX3 580 aa26.96■■□□□ 1.91
HOMER3-204ENST00000539827 ZMYM1Q5SVZ6 1142 aa26.96■■□□□ 1.91
HOMER3-204ENST00000539827 TMX3Q96JJ7 454 aa26.96■■□□□ 1.91
HOMER3-204ENST00000539827 HELLSQ9NRZ9 838 aa26.96■■□□□ 1.91
HOMER3-204ENST00000539827 CIZ1Q9ULV3 898 aaPredicted RBP26.96■■□□□ 1.91
HOMER3-204ENST00000539827 COL24A1Q17RW2 1714 aa26.95■■□□□ 1.91
HOMER3-204ENST00000539827 SLC5A1P13866 664 aa26.95■■□□□ 1.91
HOMER3-204ENST00000539827 CCDC102BQ68D86 513 aa26.95■■□□□ 1.91
HOMER3-204ENST00000539827 JAKMIP1Q96N16 626 aaKnown RBP26.95■■□□□ 1.91
HOMER3-204ENST00000539827 CASZ1Q86V15 1759 aa26.95■■□□□ 1.91
HOMER3-204ENST00000539827 CASTP20810 708 aaKnown RBP26.95■■□□□ 1.9
HOMER3-204ENST00000539827 SSFA2P28290 1259 aa26.95■■□□□ 1.9
HOMER3-204ENST00000539827 ZKSCAN1P17029 563 aaPredicted RBP26.94■■□□□ 1.9
HOMER3-204ENST00000539827 CHRNDQ07001 517 aa26.94■■□□□ 1.9
HOMER3-204ENST00000539827 ANKRD18AQ8IVF6 992 aa26.94■■□□□ 1.9
HOMER3-204ENST00000539827 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.93■■□□□ 1.9
HOMER3-204ENST00000539827 SLC27A3Q5K4L6 730 aa26.93■■□□□ 1.9
HOMER3-204ENST00000539827 TPTE2Q6XPS3 522 aa26.93■■□□□ 1.9
HOMER3-204ENST00000539827 ZNF512BQ96KM6 892 aaPredicted RBP26.93■■□□□ 1.9
HOMER3-204ENST00000539827 TAF1P21675 1872 aa26.93■■□□□ 1.9
HOMER3-204ENST00000539827 TICAM2Q86XR7 235 aa26.93■■□□□ 1.9
HOMER3-204ENST00000539827 ZGPATQ8N5A5 531 aaKnown RBP26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms