RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 KRT222Q8N1A0 295 aa13.17□□□□□ -0.3
SYNE1-237ENST00000539504 RBM33Q96EV2 1170 aaKnown RBP13.17□□□□□ -0.3
SYNE1-237ENST00000539504 KAZALD1Q96I82 304 aa13.17□□□□□ -0.3
SYNE1-237ENST00000539504 MYD88Q99836 296 aa13.17□□□□□ -0.3
SYNE1-237ENST00000539504 PTPDC1A2A3K4 754 aa13.17□□□□□ -0.3
SYNE1-237ENST00000539504 RNMTO43148 476 aaKnown RBP13.17□□□□□ -0.3
SYNE1-237ENST00000539504 GOLPH3LQ9H4A5 285 aa13.17□□□□□ -0.3
SYNE1-237ENST00000539504 NCOA5Q9HCD5 579 aaKnown RBP13.17□□□□□ -0.3
SYNE1-237ENST00000539504 CYP21A2P08686 494 aa13.17□□□□□ -0.3
SYNE1-237ENST00000539504 AGLP35573 1532 aa13.16□□□□□ -0.3
SYNE1-237ENST00000539504 PLEKHG1Q9ULL1 1385 aa13.16□□□□□ -0.3
SYNE1-237ENST00000539504 NRDCO43847 1150 aa13.16□□□□□ -0.3
SYNE1-237ENST00000539504 GORABQ5T7V8 394 aa13.16□□□□□ -0.3
SYNE1-237ENST00000539504 NEUROD6Q96NK8 337 aa13.16□□□□□ -0.3
SYNE1-237ENST00000539504 NPHP4O75161 1426 aaPredicted RBP13.16□□□□□ -0.3
SYNE1-237ENST00000539504 MED23Q9ULK4 1368 aa13.16□□□□□ -0.3
SYNE1-237ENST00000539504 PSME1Q06323 249 aa13.16□□□□□ -0.3
SYNE1-237ENST00000539504 TFCP2Q12800 502 aa13.16□□□□□ -0.3
SYNE1-237ENST00000539504 CHST3Q7LGC8 479 aa13.16□□□□□ -0.3
SYNE1-237ENST00000539504 HOMER1Q86YM7 354 aa13.16□□□□□ -0.3
SYNE1-237ENST00000539504 BIN1O00499 593 aa13.16□□□□□ -0.3
SYNE1-237ENST00000539504 SLU7O95391 586 aaKnown RBP13.16□□□□□ -0.3
SYNE1-237ENST00000539504 GABPB1Q06547 395 aaPredicted RBP13.16□□□□□ -0.3
SYNE1-237ENST00000539504 KMT5BQ4FZB7 885 aa13.16□□□□□ -0.3
SYNE1-237ENST00000539504 SARM1Q6SZW1 724 aa13.16□□□□□ -0.3
SYNE1-237ENST00000539504 ALDH8A1Q9H2A2 487 aaPredicted RBP13.16□□□□□ -0.3
SYNE1-237ENST00000539504 ERICH4A6NGS2 130 aa13.15□□□□□ -0.3
SYNE1-237ENST00000539504 FAM160A1Q05DH4 1040 aa13.15□□□□□ -0.3
SYNE1-237ENST00000539504 SLC39A6Q13433 755 aa13.15□□□□□ -0.3
SYNE1-237ENST00000539504 SNW1Q13573 536 aaKnown RBP13.15□□□□□ -0.3
SYNE1-237ENST00000539504 MCMDC2Q4G0Z9 681 aa13.15□□□□□ -0.3
SYNE1-237ENST00000539504 DBNLQ9UJU6 430 aaKnown RBP13.15□□□□□ -0.3
SYNE1-237ENST00000539504 TMC6Q7Z403 805 aa13.15□□□□□ -0.3
SYNE1-237ENST00000539504 CCAR2Q8N163 923 aaKnown RBP13.15□□□□□ -0.3
SYNE1-237ENST00000539504 ERO1AQ96HE7 468 aa13.15□□□□□ -0.3
SYNE1-237ENST00000539504 A0A1B0GVL5 298 aa13.15□□□□□ -0.31
SYNE1-237ENST00000539504 PIP4K2AP48426 406 aaPredicted RBP13.15□□□□□ -0.31
SYNE1-237ENST00000539504 STK38Q15208 465 aa13.15□□□□□ -0.31
SYNE1-237ENST00000539504 EPHA10Q5JZY3 1008 aa13.15□□□□□ -0.31
SYNE1-237ENST00000539504 DBNDD2Q9BQY9 259 aa13.15□□□□□ -0.31
SYNE1-237ENST00000539504 RCOR1Q9UKL0 485 aa13.15□□□□□ -0.31
SYNE1-237ENST00000539504 PHF8Q9UPP1 1060 aa13.15□□□□□ -0.31
SYNE1-237ENST00000539504 TSPOAP1O95153 1857 aa13.14□□□□□ -0.31
SYNE1-237ENST00000539504 NSUN7Q8NE18 718 aaKnown RBP13.14□□□□□ -0.31
SYNE1-237ENST00000539504 DDX21Q9NR30 783 aaKnown RBP eCLIP13.14□□□□□ -0.31
SYNE1-237ENST00000539504 KCNA6P17658 529 aa13.14□□□□□ -0.31
SYNE1-237ENST00000539504 GSDMDP57764 484 aa13.14□□□□□ -0.31
SYNE1-237ENST00000539504 RBM6P78332 1123 aaKnown RBP13.14□□□□□ -0.31
SYNE1-237ENST00000539504 TSGA10IPQ3SY00 556 aa13.14□□□□□ -0.31
SYNE1-237ENST00000539504 FBXO38Q6PIJ6 1188 aa13.14□□□□□ -0.31
SYNE1-237ENST00000539504 XAGE3Q8WTP9 111 aa13.14□□□□□ -0.31
SYNE1-237ENST00000539504 TBX22Q9Y458 520 aa13.14□□□□□ -0.31
SYNE1-237ENST00000539504 IGKV5-2P06315 115 aa13.14□□□□□ -0.31
SYNE1-237ENST00000539504 CCZ1BP86790 482 aa13.14□□□□□ -0.31
SYNE1-237ENST00000539504 CCZ1P86791 482 aaPredicted RBP13.14□□□□□ -0.31
SYNE1-237ENST00000539504 AMOTQ4VCS5 1084 aa13.14□□□□□ -0.31
SYNE1-237ENST00000539504 TNNI3KQ59H18 835 aa13.14□□□□□ -0.31
SYNE1-237ENST00000539504 SYT10Q6XYQ8 523 aa13.14□□□□□ -0.31
SYNE1-237ENST00000539504 DHX32Q7L7V1 743 aaKnown RBP13.14□□□□□ -0.31
SYNE1-237ENST00000539504 DHX40Q8IX18 779 aaKnown RBP13.14□□□□□ -0.31
SYNE1-237ENST00000539504 MORC2Q9Y6X9 1032 aaPredicted RBP13.14□□□□□ -0.31
SYNE1-237ENST00000539504 FPGT-TNNI3KV9GXZ4 949 aa13.14□□□□□ -0.31
SYNE1-237ENST00000539504 POLR3DP05423 398 aaPredicted RBP13.13□□□□□ -0.31
SYNE1-237ENST00000539504 ATP5JP18859 108 aa13.13□□□□□ -0.31
SYNE1-237ENST00000539504 SFPQP23246 707 aaKnown RBP eCLIP13.13□□□□□ -0.31
SYNE1-237ENST00000539504 TPM4P67936 248 aa13.13□□□□□ -0.31
SYNE1-237ENST00000539504 SLFNL1Q499Z3 407 aa13.13□□□□□ -0.31
SYNE1-237ENST00000539504 COPS6Q7L5N1 327 aa13.13□□□□□ -0.31
SYNE1-237ENST00000539504 SNRKQ9NRH2 765 aa13.13□□□□□ -0.31
SYNE1-237ENST00000539504 OTUD7BQ6GQQ9 843 aa13.13□□□□□ -0.31
SYNE1-237ENST00000539504 ISM2Q6H9L7 571 aa13.13□□□□□ -0.31
SYNE1-237ENST00000539504 NAA16Q6N069 864 aaPredicted RBP13.13□□□□□ -0.31
SYNE1-237ENST00000539504 UBE3BQ7Z3V4 1068 aa13.13□□□□□ -0.31
SYNE1-237ENST00000539504 MRPS27Q92552 414 aaKnown RBP13.13□□□□□ -0.31
SYNE1-237ENST00000539504 IFNKQ9P0W0 207 aa13.13□□□□□ -0.31
SYNE1-237ENST00000539504 NALCNQ8IZF0 1738 aa13.13□□□□□ -0.31
SYNE1-237ENST00000539504 GOLIM4O00461 696 aa13.12□□□□□ -0.31
SYNE1-237ENST00000539504 PFKFB2O60825 505 aa13.12□□□□□ -0.31
SYNE1-237ENST00000539504 NYAP1Q6ZVC0 841 aa13.12□□□□□ -0.31
SYNE1-237ENST00000539504 CACNA1FO60840 1977 aa13.12□□□□□ -0.31
SYNE1-237ENST00000539504 USPL1Q5W0Q7 1092 aa13.12□□□□□ -0.31
SYNE1-237ENST00000539504 LLPHQ9BRT6 129 aaKnown RBP13.12□□□□□ -0.31
SYNE1-237ENST00000539504 ADGRL3Q9HAR2 1447 aa13.12□□□□□ -0.31
SYNE1-237ENST00000539504 SETD1BQ9UPS6 1966 aaKnown RBP13.12□□□□□ -0.31
SYNE1-237ENST00000539504 NEURL1BA8MQ27 555 aa13.12□□□□□ -0.31
SYNE1-237ENST00000539504 ATP5J2-PTCD1G3V325 749 aa13.12□□□□□ -0.31
SYNE1-237ENST00000539504 KIF2AO00139 706 aaPredicted RBP13.12□□□□□ -0.31
SYNE1-237ENST00000539504 PTCD1O75127 700 aaKnown RBP13.12□□□□□ -0.31
SYNE1-237ENST00000539504 HMGB1P09429 215 aaKnown RBP13.12□□□□□ -0.31
SYNE1-237ENST00000539504 GCKRQ14397 625 aa13.12□□□□□ -0.31
SYNE1-237ENST00000539504 ERCC6LQ2NKX8 1250 aa13.12□□□□□ -0.31
SYNE1-237ENST00000539504 ESCO1Q5FWF5 840 aa13.12□□□□□ -0.31
SYNE1-237ENST00000539504 STOX1Q6ZVD7 989 aa13.12□□□□□ -0.31
SYNE1-237ENST00000539504 ADD1P35611 737 aaKnown RBP13.11□□□□□ -0.31
SYNE1-237ENST00000539504 FMN2Q9NZ56 1722 aa13.11□□□□□ -0.31
SYNE1-237ENST00000539504 RAB11FIP4Q86YS3 637 aa13.11□□□□□ -0.31
SYNE1-237ENST00000539504 SMARCC2Q8TAQ2 1214 aa13.11□□□□□ -0.31
SYNE1-237ENST00000539504 XPO4Q9C0E2 1151 aaKnown RBP13.11□□□□□ -0.31
SYNE1-237ENST00000539504 PCDHA7Q9UN72 937 aa13.11□□□□□ -0.31
SYNE1-237ENST00000539504 DIP2BQ9P265 1576 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms