RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 PCCAP05165 728 aaPredicted RBP9.27□□□□□ -0.93
LMO3-220ENST00000539232 MNX1P50219 401 aaPredicted RBP9.27□□□□□ -0.93
LMO3-220ENST00000539232 MRPL50Q8N5N7 158 aaKnown RBP9.27□□□□□ -0.93
LMO3-220ENST00000539232 CCDC191Q8NCU4 936 aa9.27□□□□□ -0.93
LMO3-220ENST00000539232 SSH1Q8WYL5 1049 aa9.27□□□□□ -0.93
LMO3-220ENST00000539232 MYH16Q9H6N6 1097 aa9.27□□□□□ -0.93
LMO3-220ENST00000539232 CWC25Q9NXE8 425 aaPredicted RBP9.27□□□□□ -0.93
LMO3-220ENST00000539232 AKAP11Q9UKA4 1901 aa9.27□□□□□ -0.93
LMO3-220ENST00000539232 H7C1W4 665 aa9.26□□□□□ -0.93
LMO3-220ENST00000539232 TRAF5O00463 557 aa9.26□□□□□ -0.93
LMO3-220ENST00000539232 IARSP41252 1262 aaKnown RBP9.26□□□□□ -0.93
LMO3-220ENST00000539232 GPSM2P81274 684 aa9.26□□□□□ -0.93
LMO3-220ENST00000539232 FKBP5Q13451 457 aaPredicted RBP9.26□□□□□ -0.93
LMO3-220ENST00000539232 GRAPQ13588 217 aa9.26□□□□□ -0.93
LMO3-220ENST00000539232 GCKRQ14397 625 aa9.26□□□□□ -0.93
LMO3-220ENST00000539232 EPHA10Q5JZY3 1008 aa9.26□□□□□ -0.93
LMO3-220ENST00000539232 BEND3Q5T5X7 828 aa9.26□□□□□ -0.93
LMO3-220ENST00000539232 UBE3BQ7Z3V4 1068 aa9.26□□□□□ -0.93
LMO3-220ENST00000539232 RTKN2Q8IZC4 609 aa9.26□□□□□ -0.93
LMO3-220ENST00000539232 GPC2Q8N158 579 aa9.26□□□□□ -0.93
LMO3-220ENST00000539232 GRAPLQ8TC17 118 aaPredicted RBP9.26□□□□□ -0.93
LMO3-220ENST00000539232 DNAAF4Q8WXU2 420 aa9.26□□□□□ -0.93
LMO3-220ENST00000539232 CEP290O15078 2479 aa9.25□□□□□ -0.93
LMO3-220ENST00000539232 FZD9O00144 591 aa9.25□□□□□ -0.93
LMO3-220ENST00000539232 BBOX1O75936 387 aa9.25□□□□□ -0.93
LMO3-220ENST00000539232 DDX58O95786 925 aaKnown RBP9.25□□□□□ -0.93
LMO3-220ENST00000539232 AOC3Q16853 763 aa9.25□□□□□ -0.93
LMO3-220ENST00000539232 DDX46Q7L014 1031 aaKnown RBP9.25□□□□□ -0.93
LMO3-220ENST00000539232 SP8Q8IXZ3 490 aa9.25□□□□□ -0.93
LMO3-220ENST00000539232 TTLL11Q8NHH1 800 aa9.25□□□□□ -0.93
LMO3-220ENST00000539232 PSMD1Q99460 953 aa9.25□□□□□ -0.93
LMO3-220ENST00000539232 GREM2Q9H772 168 aa9.25□□□□□ -0.93
LMO3-220ENST00000539232 KCNQ5Q9NR82 932 aa9.25□□□□□ -0.93
LMO3-220ENST00000539232 POLLQ9UGP5 575 aa9.25□□□□□ -0.93
LMO3-220ENST00000539232 CACNA1SQ13698 1873 aa9.24□□□□□ -0.93
LMO3-220ENST00000539232 SHTN1A0MZ66 631 aa9.24□□□□□ -0.93
LMO3-220ENST00000539232 YDJCA8MPS7 323 aa9.24□□□□□ -0.93
LMO3-220ENST00000539232 E9PSI1 815 aa9.24□□□□□ -0.93
LMO3-220ENST00000539232 CELF2O95319 508 aaKnown RBP9.24□□□□□ -0.93
LMO3-220ENST00000539232 RPS8P62241 208 aaKnown RBP9.24□□□□□ -0.93
LMO3-220ENST00000539232 KAZALD1Q96I82 304 aa9.24□□□□□ -0.93
LMO3-220ENST00000539232 ZIC5Q96T25 663 aa9.24□□□□□ -0.93
LMO3-220ENST00000539232 RTFDC1Q9BY42 306 aaPredicted RBP9.24□□□□□ -0.93
LMO3-220ENST00000539232 TNNQ9UQP3 1299 aa9.24□□□□□ -0.93
LMO3-220ENST00000539232 COLQQ9Y215 455 aaPredicted RBP9.24□□□□□ -0.93
LMO3-220ENST00000539232 ARFGEF2Q9Y6D5 1785 aa9.24□□□□□ -0.93
LMO3-220ENST00000539232 SZT2Q5T011 3432 aa9.24□□□□□ -0.93
LMO3-220ENST00000539232 MKI67P46013 3256 aaKnown RBP9.23□□□□□ -0.93
LMO3-220ENST00000539232 SNAP23O00161 211 aa9.23□□□□□ -0.93
LMO3-220ENST00000539232 PDE8AO60658 829 aa9.23□□□□□ -0.93
LMO3-220ENST00000539232 LMOD1P29536 600 aaPredicted RBP9.23□□□□□ -0.93
LMO3-220ENST00000539232 CTSWP56202 376 aa9.23□□□□□ -0.93
LMO3-220ENST00000539232 FOXO4P98177 505 aa9.23□□□□□ -0.93
LMO3-220ENST00000539232 DPP8Q6V1X1 898 aaPredicted RBP9.23□□□□□ -0.93
LMO3-220ENST00000539232 USP50Q70EL3 339 aaPredicted RBP9.23□□□□□ -0.93
LMO3-220ENST00000539232 LARGE2Q8N3Y3 721 aa9.23□□□□□ -0.93
LMO3-220ENST00000539232 LINS1Q8NG48 757 aa9.23□□□□□ -0.93
LMO3-220ENST00000539232 RIMBP2O15034 1052 aa9.22□□□□□ -0.93
LMO3-220ENST00000539232 PPIP5K2O43314 1243 aa9.22□□□□□ -0.93
LMO3-220ENST00000539232 TRPA1O75762 1119 aa9.22□□□□□ -0.93
LMO3-220ENST00000539232 KLRK1P26718 216 aa9.22□□□□□ -0.93
LMO3-220ENST00000539232 CXCL9Q07325 125 aa9.22□□□□□ -0.93
LMO3-220ENST00000539232 DOK7Q18PE1 504 aa9.22□□□□□ -0.93
LMO3-220ENST00000539232 CC2D2BQ6DHV5 1058 aa9.22□□□□□ -0.93
LMO3-220ENST00000539232 SLC4A10Q6U841 1118 aa9.22□□□□□ -0.93
LMO3-220ENST00000539232 MPNDQ8N594 471 aa9.22□□□□□ -0.93
LMO3-220ENST00000539232 RNF186Q9NXI6 227 aa9.22□□□□□ -0.93
LMO3-220ENST00000539232 NSFL1CQ9UNZ2 370 aaKnown RBP9.22□□□□□ -0.93
LMO3-220ENST00000539232 GJA3Q9Y6H8 435 aa9.22□□□□□ -0.93
LMO3-220ENST00000539232 CDHR2Q9BYE9 1310 aa9.22□□□□□ -0.93
LMO3-220ENST00000539232 COL6A3P12111 3177 aa9.22□□□□□ -0.93
LMO3-220ENST00000539232 RAD17O75943 681 aa9.21□□□□□ -0.94
LMO3-220ENST00000539232 CSF1RP07333 972 aa9.21□□□□□ -0.94
LMO3-220ENST00000539232 NBPF7P0C2Y1 421 aaPredicted RBP9.21□□□□□ -0.94
LMO3-220ENST00000539232 EPS15P42566 896 aa9.21□□□□□ -0.94
LMO3-220ENST00000539232 SCNN1DP51172 638 aa9.21□□□□□ -0.94
LMO3-220ENST00000539232 KIAA2012Q0VF49 1180 aa9.21□□□□□ -0.94
LMO3-220ENST00000539232 NEXNQ0ZGT2 675 aa9.21□□□□□ -0.94
LMO3-220ENST00000539232 CCDC152Q4G0S7 254 aa9.21□□□□□ -0.94
LMO3-220ENST00000539232 TBC1D16Q8TBP0 767 aa9.21□□□□□ -0.94
LMO3-220ENST00000539232 SUCLG2Q96I99 432 aa9.21□□□□□ -0.94
LMO3-220ENST00000539232 NUP98P52948 1817 aa9.21□□□□□ -0.94
LMO3-220ENST00000539232 DUOX1Q9NRD9 1551 aa9.2□□□□□ -0.94
LMO3-220ENST00000539232 KIAA0100Q14667 2235 aaKnown RBP9.2□□□□□ -0.94
LMO3-220ENST00000539232 DLK2Q6UY11 383 aa9.2□□□□□ -0.94
LMO3-220ENST00000539232 TXNRD3Q86VQ6 643 aa9.2□□□□□ -0.94
LMO3-220ENST00000539232 ZNF594Q96JF6 807 aaPredicted RBP9.2□□□□□ -0.94
LMO3-220ENST00000539232 PLA2G12BQ9BX93 195 aa9.2□□□□□ -0.94
LMO3-220ENST00000539232 DBNDD1Q9H9R9 158 aa9.2□□□□□ -0.94
LMO3-220ENST00000539232 C6orf229H3BNL8 230 aa9.19□□□□□ -0.94
LMO3-220ENST00000539232 UFL1O94874 794 aa9.19□□□□□ -0.94
LMO3-220ENST00000539232 EGFRP00533 1210 aa9.19□□□□□ -0.94
LMO3-220ENST00000539232 ITGA6P23229 1130 aa9.19□□□□□ -0.94
LMO3-220ENST00000539232 GMPSP49915 693 aaPredicted RBP9.19□□□□□ -0.94
LMO3-220ENST00000539232 RARSP54136 660 aaKnown RBP9.19□□□□□ -0.94
LMO3-220ENST00000539232 HNRNPUQ00839 825 aaKnown RBP eCLIP9.19□□□□□ -0.94
LMO3-220ENST00000539232 FBXO46Q6PJ61 603 aaPredicted RBP9.19□□□□□ -0.94
LMO3-220ENST00000539232 LMBR1LQ6UX01 489 aa9.19□□□□□ -0.94
LMO3-220ENST00000539232 NIM1KQ8IY84 436 aa9.19□□□□□ -0.94
LMO3-220ENST00000539232 ANKRD44Q8N8A2 993 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms