RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CEP290O15078 2479 aa16.29■□□□□ 0.2
CLSTN3-208ENST00000538933 KIAA0100Q14667 2235 aaKnown RBP16.29■□□□□ 0.2
CLSTN3-208ENST00000538933 ERBB4Q15303 1308 aa16.29■□□□□ 0.2
CLSTN3-208ENST00000538933 GPR25O00155 361 aa16.29■□□□□ 0.2
CLSTN3-208ENST00000538933 TM4SF4P48230 202 aa16.29■□□□□ 0.2
CLSTN3-208ENST00000538933 FXR1P51114 621 aaKnown RBP eCLIP16.29■□□□□ 0.2
CLSTN3-208ENST00000538933 KIF4BQ2VIQ3 1234 aa16.29■□□□□ 0.2
CLSTN3-208ENST00000538933 TMC4Q7Z404 712 aa16.29■□□□□ 0.2
CLSTN3-208ENST00000538933 THUMPD2Q9BTF0 503 aaKnown RBP16.29■□□□□ 0.2
CLSTN3-208ENST00000538933 RIMBP2O15034 1052 aa16.28■□□□□ 0.2
CLSTN3-208ENST00000538933 VIL1P09327 827 aaKnown RBP16.28■□□□□ 0.2
CLSTN3-208ENST00000538933 U2AF1L5P0DN76 240 aaPredicted RBP16.28■□□□□ 0.2
CLSTN3-208ENST00000538933 FKBP1BP68106 108 aa16.28■□□□□ 0.2
CLSTN3-208ENST00000538933 U2AF1Q01081 240 aaKnown RBP eCLIP16.28■□□□□ 0.2
CLSTN3-208ENST00000538933 MOB2Q70IA6 237 aa16.28■□□□□ 0.2
CLSTN3-208ENST00000538933 NLRP10Q86W26 655 aa16.28■□□□□ 0.2
CLSTN3-208ENST00000538933 PNISRQ8TF01 805 aaKnown RBP16.28■□□□□ 0.2
CLSTN3-208ENST00000538933 R3HDMLQ9H3Y0 253 aa16.28■□□□□ 0.2
CLSTN3-208ENST00000538933 RBBP6Q7Z6E9 1792 aaKnown RBP16.28■□□□□ 0.2
CLSTN3-208ENST00000538933 PSME4Q14997 1843 aa16.27■□□□□ 0.2
CLSTN3-208ENST00000538933 ECE2O60344 883 aa16.27■□□□□ 0.2
CLSTN3-208ENST00000538933 ZNF280AP59817 542 aaPredicted RBP16.27■□□□□ 0.2
CLSTN3-208ENST00000538933 DOK7Q18PE1 504 aa16.27■□□□□ 0.2
CLSTN3-208ENST00000538933 RANBP2P49792 3224 aaKnown RBP16.27■□□□□ 0.19
CLSTN3-208ENST00000538933 NEFMP07197 916 aa16.26■□□□□ 0.19
CLSTN3-208ENST00000538933 PROSER3Q2NL68 480 aa16.26■□□□□ 0.19
CLSTN3-208ENST00000538933 ANGEL2Q5VTE6 544 aaKnown RBP16.26■□□□□ 0.19
CLSTN3-208ENST00000538933 CFHR5Q9BXR6 569 aa16.26■□□□□ 0.19
CLSTN3-208ENST00000538933 NSFL1CQ9UNZ2 370 aaKnown RBP16.26■□□□□ 0.19
CLSTN3-208ENST00000538933 POTEFA5A3E0 1075 aa16.25■□□□□ 0.19
CLSTN3-208ENST00000538933 GPSM2P81274 684 aa16.25■□□□□ 0.19
CLSTN3-208ENST00000538933 SCARF1Q14162 830 aa16.25■□□□□ 0.19
CLSTN3-208ENST00000538933 CELF1Q92879 486 aaKnown RBP16.25■□□□□ 0.19
CLSTN3-208ENST00000538933 ZNF609O15014 1411 aa16.25■□□□□ 0.19
CLSTN3-208ENST00000538933 UBE2Q2LH0YL09 131 aa16.24■□□□□ 0.19
CLSTN3-208ENST00000538933 C6orf229H3BNL8 230 aa16.24■□□□□ 0.19
CLSTN3-208ENST00000538933 PNNQ9H307 717 aaKnown RBP16.24■□□□□ 0.19
CLSTN3-208ENST00000538933 TRMT112Q9UI30 125 aaKnown RBP16.24■□□□□ 0.19
CLSTN3-208ENST00000538933 TRIOBPQ9H2D6 2365 aa16.24■□□□□ 0.19
CLSTN3-208ENST00000538933 SH3TC1Q8TE82 1336 aa16.23■□□□□ 0.19
CLSTN3-208ENST00000538933 COL6A3P12111 3177 aa16.23■□□□□ 0.19
CLSTN3-208ENST00000538933 FKTNO75072 461 aa16.23■□□□□ 0.19
CLSTN3-208ENST00000538933 ANXA1P04083 346 aa16.23■□□□□ 0.19
CLSTN3-208ENST00000538933 TCIRG1Q13488 830 aa16.23■□□□□ 0.19
CLSTN3-208ENST00000538933 TBC1D16Q8TBP0 767 aa16.23■□□□□ 0.19
CLSTN3-208ENST00000538933 GMLQ99445 158 aa16.23■□□□□ 0.19
CLSTN3-208ENST00000538933 PITPNM2Q9BZ72 1349 aa16.22■□□□□ 0.19
CLSTN3-208ENST00000538933 SF3B3Q15393 1217 aaKnown RBP16.22■□□□□ 0.19
CLSTN3-208ENST00000538933 ADAMTS8Q9UP79 889 aa16.22■□□□□ 0.19
CLSTN3-208ENST00000538933 SCAF8Q9UPN6 1271 aaKnown RBP16.22■□□□□ 0.19
CLSTN3-208ENST00000538933 HSP90AB3PQ58FF7 597 aa16.21■□□□□ 0.19
CLSTN3-208ENST00000538933 COPS6Q7L5N1 327 aa16.21■□□□□ 0.19
CLSTN3-208ENST00000538933 PRAMEF18Q5VWM3 479 aa16.2■□□□□ 0.18
CLSTN3-208ENST00000538933 AGBL3Q8NEM8 1001 aa16.2■□□□□ 0.18
CLSTN3-208ENST00000538933 YTHDC1Q96MU7 727 aaKnown RBP16.2■□□□□ 0.18
CLSTN3-208ENST00000538933 EYA3Q99504 573 aa16.2■□□□□ 0.18
CLSTN3-208ENST00000538933 MAPK8IP3Q9UPT6 1336 aa16.19■□□□□ 0.18
CLSTN3-208ENST00000538933 EIF2S2P20042 333 aaKnown RBP16.19■□□□□ 0.18
CLSTN3-208ENST00000538933 INTS3Q68E01 1043 aaKnown RBP16.19■□□□□ 0.18
CLSTN3-208ENST00000538933 RSBN1LQ6PCB5 846 aaPredicted RBP16.19■□□□□ 0.18
CLSTN3-208ENST00000538933 XAGE3Q8WTP9 111 aa16.19■□□□□ 0.18
CLSTN3-208ENST00000538933 NECTIN2Q92692 538 aa16.19■□□□□ 0.18
CLSTN3-208ENST00000538933 ZNF428Q96B54 188 aa16.19■□□□□ 0.18
CLSTN3-208ENST00000538933 PLEKHF1Q96S99 279 aa16.19■□□□□ 0.18
CLSTN3-208ENST00000538933 MYOZ2Q9NPC6 264 aa16.19■□□□□ 0.18
CLSTN3-208ENST00000538933 PODXL2Q9NZ53 605 aa16.19■□□□□ 0.18
CLSTN3-208ENST00000538933 ZNF646O15015 1829 aaPredicted RBP16.18■□□□□ 0.18
CLSTN3-208ENST00000538933 CCDC146Q8IYE0 955 aa16.18■□□□□ 0.18
CLSTN3-208ENST00000538933 ZC3H12CQ9C0D7 883 aaKnown RBP16.18■□□□□ 0.18
CLSTN3-208ENST00000538933 COLQQ9Y215 455 aaPredicted RBP16.18■□□□□ 0.18
CLSTN3-208ENST00000538933 LAMB1P07942 1786 aa16.18■□□□□ 0.18
CLSTN3-208ENST00000538933 CUL9Q8IWT3 2517 aa16.17■□□□□ 0.18
CLSTN3-208ENST00000538933 USP17L8P0C7I0 530 aa16.17■□□□□ 0.18
CLSTN3-208ENST00000538933 RPS8P62241 208 aaKnown RBP16.17■□□□□ 0.18
CLSTN3-208ENST00000538933 MKRN3Q13064 507 aaKnown RBP16.17■□□□□ 0.18
CLSTN3-208ENST00000538933 OTOP1Q7RTM1 612 aa16.17■□□□□ 0.18
CLSTN3-208ENST00000538933 EN2P19622 333 aaPredicted RBP16.16■□□□□ 0.18
CLSTN3-208ENST00000538933 PTPN12Q05209 780 aaKnown RBP16.16■□□□□ 0.18
CLSTN3-208ENST00000538933 SREBF2Q12772 1141 aa16.16■□□□□ 0.18
CLSTN3-208ENST00000538933 AIMP1Q12904 312 aaKnown RBP16.16■□□□□ 0.18
CLSTN3-208ENST00000538933 NFE2L2Q16236 605 aa16.16■□□□□ 0.18
CLSTN3-208ENST00000538933 NBPF9Q3BBW0 867 aa16.16■□□□□ 0.18
CLSTN3-208ENST00000538933 RUNDC1Q96C34 613 aa16.16■□□□□ 0.18
CLSTN3-208ENST00000538933 FAM89AQ96GI7 184 aa16.16■□□□□ 0.18
CLSTN3-208ENST00000538933 HNRNPUQ00839 825 aaKnown RBP eCLIP16.15■□□□□ 0.18
CLSTN3-208ENST00000538933 LDLRAD1Q5T700 205 aa16.15■□□□□ 0.18
CLSTN3-208ENST00000538933 ISCA1Q9BUE6 129 aa16.15■□□□□ 0.18
CLSTN3-208ENST00000538933 TRIM17Q9Y577 477 aa16.15■□□□□ 0.18
CLSTN3-208ENST00000538933 SPRYD7Q5W111 196 aa16.14■□□□□ 0.17
CLSTN3-208ENST00000538933 ARMC5Q96C12 935 aa16.14■□□□□ 0.17
CLSTN3-208ENST00000538933 TSPYL4Q9UJ04 414 aa16.14■□□□□ 0.17
CLSTN3-208ENST00000538933 PTPN22Q9Y2R2 807 aa16.14■□□□□ 0.17
CLSTN3-208ENST00000538933 UFL1O94874 794 aa16.13■□□□□ 0.17
CLSTN3-208ENST00000538933 ALDH1A1P00352 501 aa16.12■□□□□ 0.17
CLSTN3-208ENST00000538933 CAP1Q01518 475 aa16.12■□□□□ 0.17
CLSTN3-208ENST00000538933 TTLL12Q14166 644 aaPredicted RBP16.12■□□□□ 0.17
CLSTN3-208ENST00000538933 OTUD5Q96G74 571 aa16.12■□□□□ 0.17
CLSTN3-208ENST00000538933 SEC31BQ9NQW1 1179 aa16.12■□□□□ 0.17
CLSTN3-208ENST00000538933 USP17L3A6NCW0 530 aa16.11■□□□□ 0.17
CLSTN3-208ENST00000538933 USP17L4A6NCW7 530 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 356.5 ms