RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 FAM196BA6NMK8 535 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 SAMD7Q7Z3H4 446 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 TTLL11Q8NHH1 800 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 FEZ1Q99689 392 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 UBN2Q6ZU65 1347 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 ATP2B1P20020 1258 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 PHKA1P46020 1223 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 CCDC93Q567U6 631 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 NFXL1Q6ZNB6 911 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 KIF1BPQ96EK5 621 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 AATFQ9NY61 560 aaKnown RBP eCLIP8.75□□□□□ -1.01
MSH6-209ENST00000538136 KDM6AO15550 1401 aaPredicted RBP8.75□□□□□ -1.01
MSH6-209ENST00000538136 EYA2O00167 538 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 ERC2O15083 957 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 MYO1BO43795 1136 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 EYA3Q99504 573 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 FZD1Q9UP38 647 aa8.75□□□□□ -1.01
MSH6-209ENST00000538136 IL16Q14005 1332 aa8.74□□□□□ -1.01
MSH6-209ENST00000538136 ZNF804AQ7Z570 1209 aa8.74□□□□□ -1.01
MSH6-209ENST00000538136 VSIG10Q8N0Z9 540 aa8.74□□□□□ -1.01
MSH6-209ENST00000538136 KCNQ5Q9NR82 932 aa8.74□□□□□ -1.01
MSH6-209ENST00000538136 RANBP6O60518 1105 aaKnown RBP8.74□□□□□ -1.01
MSH6-209ENST00000538136 ALDH1L1O75891 902 aa8.74□□□□□ -1.01
MSH6-209ENST00000538136 PDE3AQ14432 1141 aa8.74□□□□□ -1.01
MSH6-209ENST00000538136 NKX1-1Q15270 411 aaPredicted RBP8.74□□□□□ -1.01
MSH6-209ENST00000538136 MAGEB6Q8N7X4 407 aa8.74□□□□□ -1.01
MSH6-209ENST00000538136 NUP133Q8WUM0 1156 aa8.74□□□□□ -1.01
MSH6-209ENST00000538136 SOS1Q07889 1333 aaPredicted RBP8.74□□□□□ -1.01
MSH6-209ENST00000538136 NRXN3Q9Y4C0 1643 aa8.74□□□□□ -1.01
MSH6-209ENST00000538136 KLRK1P26718 216 aa8.74□□□□□ -1.01
MSH6-209ENST00000538136 DLK2Q6UY11 383 aa8.74□□□□□ -1.01
MSH6-209ENST00000538136 XAGE2Q96GT9 111 aa8.74□□□□□ -1.01
MSH6-209ENST00000538136 TLR7Q9NYK1 1049 aaKnown RBP8.74□□□□□ -1.01
MSH6-209ENST00000538136 AKAP2Q9Y2D5 859 aa8.74□□□□□ -1.01
MSH6-209ENST00000538136 NPR1P16066 1061 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 STK3Q13188 491 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 MAP1SQ66K74 1059 aaPredicted RBP8.73□□□□□ -1.01
MSH6-209ENST00000538136 BRIP1Q9BX63 1249 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 VAT1LQ9HCJ6 419 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 NALCNQ8IZF0 1738 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 PCCAP05165 728 aaPredicted RBP8.73□□□□□ -1.01
MSH6-209ENST00000538136 HTRA3P83110 453 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 DLGAP5Q15398 846 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 NAA16Q6N069 864 aaPredicted RBP8.73□□□□□ -1.01
MSH6-209ENST00000538136 CCDC129Q6ZRS4 1044 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 MAPKAPK5Q8IW41 473 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 MKNK2Q9HBH9 465 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 STX8Q9UNK0 236 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 ZNF804BA4D1E1 1349 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 LDHBP07195 334 aaKnown RBP8.73□□□□□ -1.01
MSH6-209ENST00000538136 PDIA6Q15084 440 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 CHST3Q7LGC8 479 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 RPAP2Q8IXW5 612 aaPredicted RBP8.73□□□□□ -1.01
MSH6-209ENST00000538136 CCDC144CPQ8IYA2 1237 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 HDAC9Q9UKV0 1011 aa8.73□□□□□ -1.01
MSH6-209ENST00000538136 ZNF853P0CG23 659 aa8.72□□□□□ -1.01
MSH6-209ENST00000538136 ZAP70P43403 619 aa8.72□□□□□ -1.01
MSH6-209ENST00000538136 MAP3K12Q12852 859 aa8.72□□□□□ -1.01
MSH6-209ENST00000538136 CEP85Q6P2H3 762 aa8.72□□□□□ -1.01
MSH6-209ENST00000538136 LRRC2Q9BYS8 371 aa8.72□□□□□ -1.01
MSH6-209ENST00000538136 RRAGCQ9HB90 399 aa8.72□□□□□ -1.01
MSH6-209ENST00000538136 ARHGEF28Q8N1W1 1705 aaKnown RBP8.72□□□□□ -1.01
MSH6-209ENST00000538136 IL15P40933 162 aaPredicted RBP8.72□□□□□ -1.01
MSH6-209ENST00000538136 TRDNQ13061 729 aa8.72□□□□□ -1.01
MSH6-209ENST00000538136 SLKQ9H2G2 1235 aaPredicted RBP8.72□□□□□ -1.01
MSH6-209ENST00000538136 KIF24Q5T7B8 1368 aa8.72□□□□□ -1.01
MSH6-209ENST00000538136 KIAA0100Q14667 2235 aaKnown RBP8.72□□□□□ -1.01
MSH6-209ENST00000538136 MX1P20591 662 aa8.72□□□□□ -1.01
MSH6-209ENST00000538136 ANP32AP39687 249 aaKnown RBP8.72□□□□□ -1.01
MSH6-209ENST00000538136 GPSM2P81274 684 aa8.72□□□□□ -1.01
MSH6-209ENST00000538136 RAB3GAP1Q15042 981 aa8.72□□□□□ -1.01
MSH6-209ENST00000538136 TXNRD3Q86VQ6 643 aa8.72□□□□□ -1.01
MSH6-209ENST00000538136 CHD1LQ86WJ1 897 aa8.72□□□□□ -1.01
MSH6-209ENST00000538136 POLR1AO95602 1720 aaPredicted RBP8.71□□□□□ -1.01
MSH6-209ENST00000538136 RALYLQ86SE5 291 aaKnown RBP8.71□□□□□ -1.01
MSH6-209ENST00000538136 ERC1Q8IUD2 1116 aa8.71□□□□□ -1.01
MSH6-209ENST00000538136 SULF1Q8IWU6 871 aa8.71□□□□□ -1.01
MSH6-209ENST00000538136 MED1Q15648 1581 aaPredicted RBP8.71□□□□□ -1.01
MSH6-209ENST00000538136 BCL9O00512 1426 aa8.71□□□□□ -1.01
MSH6-209ENST00000538136 ZBTB7BO15156 539 aaPredicted RBP8.71□□□□□ -1.02
MSH6-209ENST00000538136 CHGBP05060 677 aa8.71□□□□□ -1.02
MSH6-209ENST00000538136 ADRA2BP18089 450 aa8.71□□□□□ -1.02
MSH6-209ENST00000538136 UPF3BQ9BZI7 483 aaKnown RBP8.71□□□□□ -1.02
MSH6-209ENST00000538136 MCM9Q9NXL9 1143 aa8.71□□□□□ -1.02
MSH6-209ENST00000538136 MINPP1Q9UNW1 487 aa8.71□□□□□ -1.02
MSH6-209ENST00000538136 CAPN15O75808 1086 aa8.71□□□□□ -1.02
MSH6-209ENST00000538136 ATP8B2P98198 1209 aa8.71□□□□□ -1.02
MSH6-209ENST00000538136 GNL2Q13823 731 aaKnown RBP8.71□□□□□ -1.02
MSH6-209ENST00000538136 CLEC4GQ6UXB4 293 aa8.71□□□□□ -1.02
MSH6-209ENST00000538136 ANTXR1Q9H6X2 564 aa8.71□□□□□ -1.02
MSH6-209ENST00000538136 BCL2L12Q9HB09 334 aa8.71□□□□□ -1.02
MSH6-209ENST00000538136 TNS2Q63HR2 1409 aa8.71□□□□□ -1.02
MSH6-209ENST00000538136 POLRMTO00411 1230 aaKnown RBP8.7□□□□□ -1.02
MSH6-209ENST00000538136 NCLP19338 710 aaKnown RBP8.7□□□□□ -1.02
MSH6-209ENST00000538136 GRAPQ13588 217 aa8.7□□□□□ -1.02
MSH6-209ENST00000538136 CIAPIN1Q6FI81 312 aa8.7□□□□□ -1.02
MSH6-209ENST00000538136 CNTROBQ8N137 903 aa8.7□□□□□ -1.02
MSH6-209ENST00000538136 GRAPLQ8TC17 118 aaPredicted RBP8.7□□□□□ -1.02
MSH6-209ENST00000538136 EAF2Q96CJ1 260 aaPredicted RBP8.7□□□□□ -1.02
MSH6-209ENST00000538136 TDRD3Q9H7E2 651 aaKnown RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms