RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 PLA2G12BQ9BX93 195 aa12.94□□□□□ -0.34
CLIP1-210ENST00000538120 EYA2O00167 538 aa12.94□□□□□ -0.34
CLIP1-210ENST00000538120 IL15P40933 162 aaPredicted RBP12.94□□□□□ -0.34
CLIP1-210ENST00000538120 NLRP10Q86W26 655 aa12.94□□□□□ -0.34
CLIP1-210ENST00000538120 SYNE4Q8N205 404 aa12.94□□□□□ -0.34
CLIP1-210ENST00000538120 ZBTB38Q8NAP3 1195 aaPredicted RBP12.94□□□□□ -0.34
CLIP1-210ENST00000538120 PUS3Q9BZE2 481 aaKnown RBP12.94□□□□□ -0.34
CLIP1-210ENST00000538120 GPR108Q9NPR9 543 aa12.94□□□□□ -0.34
CLIP1-210ENST00000538120 NWD2Q9ULI1 1742 aa12.93□□□□□ -0.34
CLIP1-210ENST00000538120 CIAO1O76071 339 aa12.93□□□□□ -0.34
CLIP1-210ENST00000538120 CSF1RP07333 972 aa12.93□□□□□ -0.34
CLIP1-210ENST00000538120 ZGPATQ8N5A5 531 aaKnown RBP12.93□□□□□ -0.34
CLIP1-210ENST00000538120 TMX3Q96JJ7 454 aa12.93□□□□□ -0.34
CLIP1-210ENST00000538120 IL6STP40189 918 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-210ENST00000538120 INTS5Q6P9B9 1019 aaKnown RBP12.93□□□□□ -0.34
CLIP1-210ENST00000538120 KIAA1211Q6ZU35 1233 aa12.93□□□□□ -0.34
CLIP1-210ENST00000538120 KCNB2Q92953 911 aa12.93□□□□□ -0.34
CLIP1-210ENST00000538120 UPF3BQ9BZI7 483 aaKnown RBP12.93□□□□□ -0.34
CLIP1-210ENST00000538120 A0A0D9SFI3 127 aa12.92□□□□□ -0.34
CLIP1-210ENST00000538120 HIP1O00291 1037 aa12.92□□□□□ -0.34
CLIP1-210ENST00000538120 GPTP24298 496 aa12.92□□□□□ -0.34
CLIP1-210ENST00000538120 MCM2P49736 904 aa12.92□□□□□ -0.34
CLIP1-210ENST00000538120 TRIM44Q96DX7 344 aaPredicted RBP12.92□□□□□ -0.34
CLIP1-210ENST00000538120 FSD1Q9BTV5 496 aa12.92□□□□□ -0.34
CLIP1-210ENST00000538120 BMP2KQ9NSY1 1161 aaPredicted RBP12.92□□□□□ -0.34
CLIP1-210ENST00000538120 STK24Q9Y6E0 443 aa12.92□□□□□ -0.34
CLIP1-210ENST00000538120 NDUFB9Q9Y6M9 179 aa12.92□□□□□ -0.34
CLIP1-210ENST00000538120 UBAP1LF5GYI3 381 aa12.91□□□□□ -0.34
CLIP1-210ENST00000538120 CYP2E1P05181 493 aaPredicted RBP12.91□□□□□ -0.34
CLIP1-210ENST00000538120 TIMM10P62072 90 aa12.91□□□□□ -0.34
CLIP1-210ENST00000538120 CUL4AQ13619 759 aa12.91□□□□□ -0.34
CLIP1-210ENST00000538120 HAUS7Q99871 368 aa12.91□□□□□ -0.34
CLIP1-210ENST00000538120 ISY1Q9ULR0 285 aaKnown RBP12.91□□□□□ -0.34
CLIP1-210ENST00000538120 CDHR2Q9BYE9 1310 aa12.91□□□□□ -0.34
CLIP1-210ENST00000538120 ERVV-1B6SEH8 477 aa12.91□□□□□ -0.34
CLIP1-210ENST00000538120 EIF5P55010 431 aaKnown RBP12.91□□□□□ -0.34
CLIP1-210ENST00000538120 HSP90AB3PQ58FF7 597 aa12.91□□□□□ -0.34
CLIP1-210ENST00000538120 TBC1D2BQ9UPU7 963 aa12.91□□□□□ -0.34
CLIP1-210ENST00000538120 CCDC171Q6TFL3 1326 aa12.91□□□□□ -0.34
CLIP1-210ENST00000538120 MED23Q9ULK4 1368 aa12.91□□□□□ -0.34
CLIP1-210ENST00000538120 BCL9LQ86UU0 1499 aa12.9□□□□□ -0.34
CLIP1-210ENST00000538120 TIE1P35590 1138 aa12.9□□□□□ -0.34
CLIP1-210ENST00000538120 ITPK1Q13572 414 aa12.9□□□□□ -0.34
CLIP1-210ENST00000538120 NECTIN1Q15223 517 aa12.9□□□□□ -0.34
CLIP1-210ENST00000538120 DZIP3Q86Y13 1208 aaKnown RBP12.9□□□□□ -0.34
CLIP1-210ENST00000538120 TTC14Q96N46 770 aa12.9□□□□□ -0.34
CLIP1-210ENST00000538120 TMEM106CQ9BVX2 250 aa12.9□□□□□ -0.34
CLIP1-210ENST00000538120 CWC22Q9HCG8 908 aaKnown RBP12.9□□□□□ -0.34
CLIP1-210ENST00000538120 TTLL13PA6NNM8 815 aa12.9□□□□□ -0.34
CLIP1-210ENST00000538120 CCDC57Q2TAC2 916 aa12.9□□□□□ -0.34
CLIP1-210ENST00000538120 SKOR2Q2VWA4 1001 aaPredicted RBP12.9□□□□□ -0.34
CLIP1-210ENST00000538120 ZNF34Q8IZ26 560 aa12.9□□□□□ -0.34
CLIP1-210ENST00000538120 MAP4K1Q92918 833 aa12.9□□□□□ -0.34
CLIP1-210ENST00000538120 CCDC85AQ96PX6 553 aaPredicted RBP12.9□□□□□ -0.34
CLIP1-210ENST00000538120 ZNF609O15014 1411 aa12.9□□□□□ -0.34
CLIP1-210ENST00000538120 LOC102724428A0A0B4J2F2 783 aa12.89□□□□□ -0.35
CLIP1-210ENST00000538120 KCNQ2O43526 872 aa12.89□□□□□ -0.35
CLIP1-210ENST00000538120 BAG4O95429 457 aaKnown RBP12.89□□□□□ -0.35
CLIP1-210ENST00000538120 CHGBP05060 677 aa12.89□□□□□ -0.35
CLIP1-210ENST00000538120 ATP6V1AP38606 617 aa12.89□□□□□ -0.35
CLIP1-210ENST00000538120 SIK1P57059 783 aa12.89□□□□□ -0.35
CLIP1-210ENST00000538120 PKP1Q13835 747 aa12.89□□□□□ -0.35
CLIP1-210ENST00000538120 CLEC17AQ6ZS10 378 aa12.89□□□□□ -0.35
CLIP1-210ENST00000538120 NEUROD6Q96NK8 337 aa12.89□□□□□ -0.35
CLIP1-210ENST00000538120 UBN2Q6ZU65 1347 aa12.89□□□□□ -0.35
CLIP1-210ENST00000538120 CRKLP46109 303 aaKnown RBP12.89□□□□□ -0.35
CLIP1-210ENST00000538120 PRPF40BQ6NWY9 871 aaKnown RBP12.89□□□□□ -0.35
CLIP1-210ENST00000538120 ZNF589Q86UQ0 364 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-210ENST00000538120 TTLL11Q8NHH1 800 aa12.89□□□□□ -0.35
CLIP1-210ENST00000538120 CCDC87Q9NVE4 849 aa12.89□□□□□ -0.35
CLIP1-210ENST00000538120 A0A0G2JS52 829 aa12.88□□□□□ -0.35
CLIP1-210ENST00000538120 VPS72Q15906 364 aa12.88□□□□□ -0.35
CLIP1-210ENST00000538120 FAM98CQ17RN3 349 aaKnown RBP12.88□□□□□ -0.35
CLIP1-210ENST00000538120 DNAJC2Q99543 621 aaKnown RBP12.88□□□□□ -0.35
CLIP1-210ENST00000538120 ZDHHC9Q9Y397 364 aa12.88□□□□□ -0.35
CLIP1-210ENST00000538120 RBM8AQ9Y5S9 174 aaKnown RBP12.88□□□□□ -0.35
CLIP1-210ENST00000538120 DDX49Q9Y6V7 483 aaKnown RBP12.88□□□□□ -0.35
CLIP1-210ENST00000538120 JCADQ9P266 1359 aa12.88□□□□□ -0.35
CLIP1-210ENST00000538120 KAT6BQ8WYB5 2073 aa12.88□□□□□ -0.35
CLIP1-210ENST00000538120 A0A1B0GUL7 405 aa12.88□□□□□ -0.35
CLIP1-210ENST00000538120 ADCK5Q3MIX3 580 aa12.88□□□□□ -0.35
CLIP1-210ENST00000538120 NOL8Q76FK4 1167 aaKnown RBP12.88□□□□□ -0.35
CLIP1-210ENST00000538120 C8orf37Q96NL8 207 aa12.88□□□□□ -0.35
CLIP1-210ENST00000538120 RFX7Q2KHR2 1363 aa12.88□□□□□ -0.35
CLIP1-210ENST00000538120 IRS4O14654 1257 aaPredicted RBP12.87□□□□□ -0.35
CLIP1-210ENST00000538120 CPA1P15085 419 aa12.87□□□□□ -0.35
CLIP1-210ENST00000538120 NUCB2P80303 420 aa12.87□□□□□ -0.35
CLIP1-210ENST00000538120 CREB3L3Q68CJ9 461 aa12.87□□□□□ -0.35
CLIP1-210ENST00000538120 DDX46Q7L014 1031 aaKnown RBP12.87□□□□□ -0.35
CLIP1-210ENST00000538120 PALLDQ8WX93 1383 aa12.87□□□□□ -0.35
CLIP1-210ENST00000538120 GREM2Q9H772 168 aa12.87□□□□□ -0.35
CLIP1-210ENST00000538120 ANKRD36CQ5JPF3 1778 aa12.87□□□□□ -0.35
CLIP1-210ENST00000538120 RREB1Q92766 1687 aa12.87□□□□□ -0.35
CLIP1-210ENST00000538120 NASPP49321 788 aaPredicted RBP12.87□□□□□ -0.35
CLIP1-210ENST00000538120 CTSWP56202 376 aa12.87□□□□□ -0.35
CLIP1-210ENST00000538120 IFIT5Q13325 482 aaKnown RBP12.87□□□□□ -0.35
CLIP1-210ENST00000538120 HSP90AA2PQ14568 343 aaPredicted RBP12.87□□□□□ -0.35
CLIP1-210ENST00000538120 MCTP1Q6DN14 999 aa12.87□□□□□ -0.35
CLIP1-210ENST00000538120 NGLY1Q96IV0 654 aa12.87□□□□□ -0.35
CLIP1-210ENST00000538120 CEP126Q9P2H0 1117 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms