RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 TRIM47Q96LD4 638 aa12.17□□□□□ -0.46
CLIP1-209ENST00000537178 PUF60Q9UHX1 559 aaKnown RBP12.17□□□□□ -0.46
CLIP1-209ENST00000537178 CCDC171Q6TFL3 1326 aa12.17□□□□□ -0.46
CLIP1-209ENST00000537178 CCDC6Q16204 474 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 TMX1Q9H3N1 280 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 HYPKQ9NX55 129 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 HMG20BQ9P0W2 317 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 ARAP3Q8WWN8 1544 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 DYNC1I1O14576 645 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 MCM10Q7L590 875 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 DBF4Q9UBU7 674 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-209ENST00000537178 NKTRP30414 1462 aaKnown RBP12.16□□□□□ -0.46
CLIP1-209ENST00000537178 GJB2P29033 226 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 PRPHP41219 470 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 TRAF1Q13077 416 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 CEP135Q66GS9 1140 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 RAB3IL1Q8TBN0 382 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 NUDT16Q96DE0 195 aaKnown RBP12.16□□□□□ -0.46
CLIP1-209ENST00000537178 ZSCAN16Q9H4T2 348 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-209ENST00000537178 CABP5Q9NP86 173 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.16□□□□□ -0.461e-6■■■■□ 20.3
CLIP1-209ENST00000537178 BAG3O95817 575 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 MIS18AQ9NYP9 233 aa12.16□□□□□ -0.46
CLIP1-209ENST00000537178 TBC1D5Q92609 795 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 CTAGE1Q96RT6 745 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 MYOM2P54296 1465 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 PPP4R3BQ5MIZ7 849 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 ERMNQ8TAM6 284 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 TBC1D2Q9BYX2 928 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 KAT14Q9H8E8 782 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 ARFGAP3Q9NP61 516 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 CTAGE15A4D2H0 777 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 TSPY2A6NKD2 308 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 CTAGE8P0CG41 777 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 CTAGE6Q86UF2 777 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 CTAGE4Q8IX94 777 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 PSMD1Q99460 953 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 THUMPD2Q9BTF0 503 aaKnown RBP12.15□□□□□ -0.46
CLIP1-209ENST00000537178 PANK2Q9BZ23 570 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 EXOC1Q9NV70 894 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 SCAF11Q99590 1463 aaKnown RBP12.15□□□□□ -0.46
CLIP1-209ENST00000537178 PPLO60437 1756 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 SETBP1Q9Y6X0 1596 aa12.15□□□□□ -0.46
CLIP1-209ENST00000537178 SEC24BO95487 1268 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 METAP2P50579 478 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLIP1-209ENST00000537178 KRT222Q8N1A0 295 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 SELENOOQ9BVL4 669 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 ZSWIM4Q9H7M6 989 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 SPDYE4A6NLX3 237 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 IVLP07476 585 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 GPATCH11Q8N954 259 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 NCOA7Q8NI08 942 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 RPGRQ92834 1020 aaKnown RBP12.14□□□□□ -0.47
CLIP1-209ENST00000537178 STMN4Q9H169 189 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-209ENST00000537178 SAMM50Q9Y512 469 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 ADGRB1O14514 1584 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 ZCCHC11Q5TAX3 1644 aaKnown RBP12.14□□□□□ -0.47
CLIP1-209ENST00000537178 IGHDP01880 384 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 MFSD6Q6ZSS7 791 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 MICU3Q86XE3 530 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLIP1-209ENST00000537178 RASAL2Q9UJF2 1139 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 V9GYY5 206 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-209ENST00000537178 NSD3Q9BZ95 1437 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 ATP2A1O14983 1001 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 HLA-DOAP06340 250 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 TTLL12Q14166 644 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-209ENST00000537178 KLHL40Q2TBA0 621 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 TTC14Q96N46 770 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 NEK1Q96PY6 1258 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 CDC5LQ99459 802 aaKnown RBP12.14□□□□□ -0.47
CLIP1-209ENST00000537178 GDPD2Q9HCC8 539 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 ABCA9Q8IUA7 1624 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 TUBB4AP04350 444 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 MXRA7P84157 204 aa12.14□□□□□ -0.47
CLIP1-209ENST00000537178 DAAM2Q86T65 1068 aa12.13□□□□□ -0.47
CLIP1-209ENST00000537178 SMC6Q96SB8 1091 aa12.13□□□□□ -0.47
CLIP1-209ENST00000537178 MPHOSPH6Q99547 160 aaKnown RBP12.13□□□□□ -0.47
CLIP1-209ENST00000537178 PTPRCP08575 1304 aa12.13□□□□□ -0.47
CLIP1-209ENST00000537178 OPA1O60313 960 aa12.13□□□□□ -0.47
CLIP1-209ENST00000537178 SYKP43405 635 aa12.13□□□□□ -0.47
CLIP1-209ENST00000537178 BMP2KLQ5H9B9 411 aa12.13□□□□□ -0.47
CLIP1-209ENST00000537178 TIGD1Q96MW7 591 aa12.13□□□□□ -0.47
CLIP1-209ENST00000537178 SYNCQ9H7C4 482 aa12.13□□□□□ -0.47
CLIP1-209ENST00000537178 SERPINA10Q9UK55 444 aa12.13□□□□□ -0.47
CLIP1-209ENST00000537178 RBM25P49756 843 aaKnown RBP12.13□□□□□ -0.47
CLIP1-209ENST00000537178 UBASH3AP57075 661 aa12.13□□□□□ -0.47
CLIP1-209ENST00000537178 C6orf229H3BNL8 230 aa12.12□□□□□ -0.47
CLIP1-209ENST00000537178 LDHAL6AQ6ZMR3 332 aa12.12□□□□□ -0.47
CLIP1-209ENST00000537178 BICD1Q96G01 975 aa12.12□□□□□ -0.47
CLIP1-209ENST00000537178 TTC12Q9H892 705 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-209ENST00000537178 VAT1LQ9HCJ6 419 aa12.12□□□□□ -0.47
CLIP1-209ENST00000537178 KRT13P13646 458 aa12.12□□□□□ -0.47
CLIP1-209ENST00000537178 ATRIPQ8WXE1 791 aa12.12□□□□□ -0.47
CLIP1-209ENST00000537178 SLC26A6Q9BXS9 759 aa12.12□□□□□ -0.47
CLIP1-209ENST00000537178 F6X3S4 739 aa12.12□□□□□ -0.47
CLIP1-209ENST00000537178 TACC1O75410 805 aa12.12□□□□□ -0.47
CLIP1-209ENST00000537178 PUS7Q96PZ0 661 aaKnown RBP12.12□□□□□ -0.47
CLIP1-209ENST00000537178 UTP14AQ9BVJ6 771 aaKnown RBP12.12□□□□□ -0.47
CLIP1-209ENST00000537178 SRRTQ9BXP5 876 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms