RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 RPS12P25398 132 aaKnown RBP17.86■□□□□ 0.45
SYNE1-235ENST00000537033 CTCFP49711 727 aaPredicted RBP17.86■□□□□ 0.45
SYNE1-235ENST00000537033 NCBP3Q53F19 620 aaKnown RBP17.86■□□□□ 0.45
SYNE1-235ENST00000537033 ANKRD18AQ8IVF6 992 aa17.86■□□□□ 0.45
SYNE1-235ENST00000537033 PI4KAP1Q8N8J0 262 aa17.86■□□□□ 0.45
SYNE1-235ENST00000537033 JARID2Q92833 1246 aaPredicted RBP17.86■□□□□ 0.45
SYNE1-235ENST00000537033 CCDC85AQ96PX6 553 aaPredicted RBP17.86■□□□□ 0.45
SYNE1-235ENST00000537033 PODXL2Q9NZ53 605 aa17.86■□□□□ 0.45
SYNE1-235ENST00000537033 GGA1Q9UJY5 639 aa17.86■□□□□ 0.45
SYNE1-235ENST00000537033 CACNA1FO60840 1977 aa17.86■□□□□ 0.45
SYNE1-235ENST00000537033 CAPN15O75808 1086 aa17.85■□□□□ 0.45
SYNE1-235ENST00000537033 CTSWP56202 376 aa17.85■□□□□ 0.45
SYNE1-235ENST00000537033 MAP2K1Q02750 393 aaPredicted RBP17.85■□□□□ 0.45
SYNE1-235ENST00000537033 FMR1Q06787 632 aaKnown RBP eCLIP17.85■□□□□ 0.45
SYNE1-235ENST00000537033 DOK7Q18PE1 504 aa17.85■□□□□ 0.45
SYNE1-235ENST00000537033 TRPM4Q8TD43 1214 aa17.85■□□□□ 0.45
SYNE1-235ENST00000537033 CDC5LQ99459 802 aaKnown RBP17.85■□□□□ 0.45
SYNE1-235ENST00000537033 GLIS2Q9BZE0 524 aaPredicted RBP17.85■□□□□ 0.45
SYNE1-235ENST00000537033 ZBTB12Q9Y330 459 aaPredicted RBP17.85■□□□□ 0.45
SYNE1-235ENST00000537033 CELF2O95319 508 aaKnown RBP17.84■□□□□ 0.45
SYNE1-235ENST00000537033 GRM1Q13255 1194 aa17.84■□□□□ 0.45
SYNE1-235ENST00000537033 CST9Q5W186 159 aa17.84■□□□□ 0.45
SYNE1-235ENST00000537033 CDC37L1Q7L3B6 337 aa17.84■□□□□ 0.45
SYNE1-235ENST00000537033 CAPNS2Q96L46 248 aa17.84■□□□□ 0.45
SYNE1-235ENST00000537033 PRDM10Q9NQV6 1147 aa17.84■□□□□ 0.45
SYNE1-235ENST00000537033 WBP1LQ9NX94 342 aa17.84■□□□□ 0.45
SYNE1-235ENST00000537033 PGAP2Q9UHJ9 254 aa17.84■□□□□ 0.45
SYNE1-235ENST00000537033 TLL2Q9Y6L7 1015 aa17.84■□□□□ 0.45
SYNE1-235ENST00000537033 XDHP47989 1333 aa17.83■□□□□ 0.44
SYNE1-235ENST00000537033 ZNF316A6NFI3 1004 aaPredicted RBP17.83■□□□□ 0.44
SYNE1-235ENST00000537033 SLC4A2P04920 1241 aa17.83■□□□□ 0.44
SYNE1-235ENST00000537033 IGKV5-2P06315 115 aa17.83■□□□□ 0.44
SYNE1-235ENST00000537033 GPR101Q96P66 508 aaPredicted RBP17.83■□□□□ 0.44
SYNE1-235ENST00000537033 BEGAINQ9BUH8 593 aa17.83■□□□□ 0.44
SYNE1-235ENST00000537033 SCN9AQ15858 1988 aa17.82■□□□□ 0.44
SYNE1-235ENST00000537033 PSME4Q14997 1843 aa17.82■□□□□ 0.44
SYNE1-235ENST00000537033 FANCIQ9NVI1 1328 aa17.82■□□□□ 0.44
SYNE1-235ENST00000537033 SHTN1A0MZ66 631 aa17.82■□□□□ 0.44
SYNE1-235ENST00000537033 HIRAP54198 1017 aaPredicted RBP17.82■□□□□ 0.44
SYNE1-235ENST00000537033 CWF19L2Q2TBE0 894 aaKnown RBP17.82■□□□□ 0.44
SYNE1-235ENST00000537033 ZNF408Q9H9D4 720 aa17.82■□□□□ 0.44
SYNE1-235ENST00000537033 RTL9Q8NET4 1388 aa17.81■□□□□ 0.44
SYNE1-235ENST00000537033 NEURL1BA8MQ27 555 aa17.81■□□□□ 0.44
SYNE1-235ENST00000537033 TBC1D10BQ4KMP7 808 aaPredicted RBP17.81■□□□□ 0.44
SYNE1-235ENST00000537033 CYP4F22Q6NT55 531 aa17.81■□□□□ 0.44
SYNE1-235ENST00000537033 SAMD7Q7Z3H4 446 aa17.81■□□□□ 0.44
SYNE1-235ENST00000537033 UBE3BQ7Z3V4 1068 aa17.81■□□□□ 0.44
SYNE1-235ENST00000537033 ATP2B4P23634 1241 aa17.8■□□□□ 0.44
SYNE1-235ENST00000537033 FLIIQ13045 1269 aa17.8■□□□□ 0.44
SYNE1-235ENST00000537033 FKBP5Q13451 457 aaPredicted RBP17.8■□□□□ 0.44
SYNE1-235ENST00000537033 G2E3Q7L622 706 aa17.8■□□□□ 0.44
SYNE1-235ENST00000537033 WDR63Q8IWG1 891 aa17.8■□□□□ 0.44
SYNE1-235ENST00000537033 MYH16Q9H6N6 1097 aa17.8■□□□□ 0.44
SYNE1-235ENST00000537033 SALL2Q9Y467 1007 aaPredicted RBP17.8■□□□□ 0.44
SYNE1-235ENST00000537033 LBX1P52954 281 aa17.79■□□□□ 0.44
SYNE1-235ENST00000537033 RBM26Q5T8P6 1007 aaKnown RBP17.79■□□□□ 0.44
SYNE1-235ENST00000537033 SAPCD2Q86UD0 394 aa17.79■□□□□ 0.44
SYNE1-235ENST00000537033 TTLL11Q8NHH1 800 aa17.79■□□□□ 0.44
SYNE1-235ENST00000537033 DCPSQ96C86 337 aaKnown RBP17.79■□□□□ 0.44
SYNE1-235ENST00000537033 HHIPL1Q96JK4 782 aa17.79■□□□□ 0.44
SYNE1-235ENST00000537033 GREM2Q9H772 168 aa17.79■□□□□ 0.44
SYNE1-235ENST00000537033 KCNQ5Q9NR82 932 aa17.79■□□□□ 0.44
SYNE1-235ENST00000537033 VIL1P09327 827 aaKnown RBP17.78■□□□□ 0.44
SYNE1-235ENST00000537033 KIF4BQ2VIQ3 1234 aa17.78■□□□□ 0.44
SYNE1-235ENST00000537033 KRT26Q7Z3Y9 468 aa17.78■□□□□ 0.44
SYNE1-235ENST00000537033 USP48Q86UV5 1035 aa17.78■□□□□ 0.44
SYNE1-235ENST00000537033 BSDC1Q9NW68 430 aaPredicted RBP17.78■□□□□ 0.44
SYNE1-235ENST00000537033 ZNF609O15014 1411 aa17.78■□□□□ 0.44
SYNE1-235ENST00000537033 MAP2K2P36507 400 aa17.77■□□□□ 0.44
SYNE1-235ENST00000537033 IGHMBP2P38935 993 aaKnown RBP17.77■□□□□ 0.44
SYNE1-235ENST00000537033 GCKRQ14397 625 aa17.77■□□□□ 0.44
SYNE1-235ENST00000537033 DNAAF4Q8WXU2 420 aa17.77■□□□□ 0.44
SYNE1-235ENST00000537033 MED23Q9ULK4 1368 aa17.77■□□□□ 0.43
SYNE1-235ENST00000537033 POLR2AP24928 1970 aaKnown RBP17.77■□□□□ 0.43
SYNE1-235ENST00000537033 H7C1W4 665 aa17.76■□□□□ 0.43
SYNE1-235ENST00000537033 HSPA8P11142 646 aaKnown RBP17.76■□□□□ 0.43
SYNE1-235ENST00000537033 RSBN1LQ6PCB5 846 aaPredicted RBP17.76■□□□□ 0.43
SYNE1-235ENST00000537033 PODNQ7Z5L7 613 aa17.76■□□□□ 0.43
SYNE1-235ENST00000537033 SULF1Q8IWU6 871 aa17.76■□□□□ 0.43
SYNE1-235ENST00000537033 AGBL3Q8NEM8 1001 aa17.76■□□□□ 0.43
SYNE1-235ENST00000537033 LINS1Q8NG48 757 aa17.76■□□□□ 0.43
SYNE1-235ENST00000537033 AOC2O75106 756 aa17.75■□□□□ 0.43
SYNE1-235ENST00000537033 EGFRP00533 1210 aa17.75■□□□□ 0.43
SYNE1-235ENST00000537033 EXOSC9Q06265 439 aaKnown RBP17.75■□□□□ 0.43
SYNE1-235ENST00000537033 PLA2G12BQ9BX93 195 aa17.75■□□□□ 0.43
SYNE1-235ENST00000537033 MINPP1Q9UNW1 487 aa17.75■□□□□ 0.43
SYNE1-235ENST00000537033 USP17L3A6NCW0 530 aa17.74■□□□□ 0.43
SYNE1-235ENST00000537033 USP17L4A6NCW7 530 aa17.74■□□□□ 0.43
SYNE1-235ENST00000537033 VAMP4O75379 141 aa17.74■□□□□ 0.43
SYNE1-235ENST00000537033 CCT4P50991 539 aaKnown RBP17.74■□□□□ 0.43
SYNE1-235ENST00000537033 HUNKP57058 714 aa17.74■□□□□ 0.43
SYNE1-235ENST00000537033 USP17L1Q7RTZ2 530 aa17.74■□□□□ 0.43
SYNE1-235ENST00000537033 C2orf69Q8N8R5 385 aa17.74■□□□□ 0.43
SYNE1-235ENST00000537033 MPHOSPH8Q99549 860 aa17.74■□□□□ 0.43
SYNE1-235ENST00000537033 GGA3Q9NZ52 723 aa17.74■□□□□ 0.43
SYNE1-235ENST00000537033 ADM5C9JUS6 153 aa17.73■□□□□ 0.43
SYNE1-235ENST00000537033 USP17L8P0C7I0 530 aa17.73■□□□□ 0.43
SYNE1-235ENST00000537033 ITGA6P23229 1130 aa17.73■□□□□ 0.43
SYNE1-235ENST00000537033 ZNF280AP59817 542 aaPredicted RBP17.73■□□□□ 0.43
SYNE1-235ENST00000537033 FAM161AQ3B820 660 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms