RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 EXOC6BQ9Y2D4 811 aa7.59□□□□□ -1.19
SYNE1-233ENST00000535896 WNK3Q9BYP7 1800 aa7.59□□□□□ -1.2
SYNE1-233ENST00000535896 PNMA6EA0A0J9YXQ4 647 aa7.59□□□□□ -1.2
SYNE1-233ENST00000535896 HIP1O00291 1037 aa7.59□□□□□ -1.2
SYNE1-233ENST00000535896 ONECUT3O60422 494 aaPredicted RBP7.59□□□□□ -1.2
SYNE1-233ENST00000535896 GLRX3O76003 335 aaKnown RBP7.59□□□□□ -1.2
SYNE1-233ENST00000535896 G2E3Q7L622 706 aa7.59□□□□□ -1.2
SYNE1-233ENST00000535896 ZDHHC16Q969W1 377 aa7.59□□□□□ -1.2
SYNE1-233ENST00000535896 LTV1Q96GA3 475 aaPredicted RBP7.59□□□□□ -1.2
SYNE1-233ENST00000535896 GPATCH3Q96I76 525 aa7.59□□□□□ -1.2
SYNE1-233ENST00000535896 TTC14Q96N46 770 aa7.59□□□□□ -1.2
SYNE1-233ENST00000535896 EYA1Q99502 592 aa7.59□□□□□ -1.2
SYNE1-233ENST00000535896 USP44Q9H0E7 712 aa7.59□□□□□ -1.2
SYNE1-233ENST00000535896 NLRP2Q9NX02 1062 aa7.59□□□□□ -1.2
SYNE1-233ENST00000535896 RFX7Q2KHR2 1363 aa7.58□□□□□ -1.2
SYNE1-233ENST00000535896 THSD7AQ9UPZ6 1657 aa7.58□□□□□ -1.2
SYNE1-233ENST00000535896 TRIM6-TRIM34B2RNG4 842 aa7.58□□□□□ -1.2
SYNE1-233ENST00000535896 F6X3S4 739 aa7.58□□□□□ -1.2
SYNE1-233ENST00000535896 ALDH1L1O75891 902 aa7.58□□□□□ -1.2
SYNE1-233ENST00000535896 ZSCAN22P10073 491 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-233ENST00000535896 TICAM2Q86XR7 235 aa7.58□□□□□ -1.2
SYNE1-233ENST00000535896 PI4K2BQ8TCG2 481 aa7.58□□□□□ -1.2
SYNE1-233ENST00000535896 RHPN1Q8TCX5 695 aa7.58□□□□□ -1.2
SYNE1-233ENST00000535896 ADAM33Q9BZ11 813 aa7.58□□□□□ -1.2
SYNE1-233ENST00000535896 SNRKQ9NRH2 765 aa7.58□□□□□ -1.2
SYNE1-233ENST00000535896 USP25Q9UHP3 1055 aa7.58□□□□□ -1.2
SYNE1-233ENST00000535896 LIMCH1Q9UPQ0 1083 aa7.58□□□□□ -1.2
SYNE1-233ENST00000535896 LRRFIP2Q9Y608 721 aaKnown RBP7.58□□□□□ -1.2
SYNE1-233ENST00000535896 ELP1O95163 1332 aa7.58□□□□□ -1.2
SYNE1-233ENST00000535896 DISP2A7MBM2 1401 aa7.57□□□□□ -1.2
SYNE1-233ENST00000535896 PARP4Q9UKK3 1724 aaKnown RBP7.57□□□□□ -1.2
SYNE1-233ENST00000535896 EVI5O60447 810 aa7.57□□□□□ -1.2
SYNE1-233ENST00000535896 ITGBL1O95965 494 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-233ENST00000535896 PDCP20941 246 aa7.57□□□□□ -1.2
SYNE1-233ENST00000535896 GTF2F1P35269 517 aaKnown RBP eCLIP7.57□□□□□ -1.2
SYNE1-233ENST00000535896 FAM98CQ17RN3 349 aaKnown RBP7.57□□□□□ -1.2
SYNE1-233ENST00000535896 HDGFL1Q5TGJ6 251 aa7.57□□□□□ -1.2
SYNE1-233ENST00000535896 VPS53Q5VIR6 699 aa7.57□□□□□ -1.2
SYNE1-233ENST00000535896 NBPF6Q5VWK0 638 aa7.57□□□□□ -1.2
SYNE1-233ENST00000535896 PIBF1Q8WXW3 757 aa7.57□□□□□ -1.2
SYNE1-233ENST00000535896 RILPL2Q969X0 211 aa7.57□□□□□ -1.2
SYNE1-233ENST00000535896 NBPF4Q96M43 638 aa7.57□□□□□ -1.2
SYNE1-233ENST00000535896 LSG1Q9H089 658 aaKnown RBP7.57□□□□□ -1.2
SYNE1-233ENST00000535896 ALDH8A1Q9H2A2 487 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-233ENST00000535896 PALD1Q9ULE6 856 aa7.57□□□□□ -1.2
SYNE1-233ENST00000535896 SCN11AQ9UI33 1791 aa7.57□□□□□ -1.2
SYNE1-233ENST00000535896 SPEF2Q9C093 1822 aa7.56□□□□□ -1.2
SYNE1-233ENST00000535896 LAMB4A4D0S4 1761 aa7.56□□□□□ -1.2
SYNE1-233ENST00000535896 RGPD2P0DJD1 1756 aa7.56□□□□□ -1.2
SYNE1-233ENST00000535896 APBB1O00213 710 aa7.56□□□□□ -1.2
SYNE1-233ENST00000535896 STX6O43752 255 aa7.56□□□□□ -1.2
SYNE1-233ENST00000535896 CAVIN2O95810 425 aa7.56□□□□□ -1.2
SYNE1-233ENST00000535896 F13A1P00488 732 aa7.56□□□□□ -1.2
SYNE1-233ENST00000535896 IL2RBP14784 551 aa7.56□□□□□ -1.2
SYNE1-233ENST00000535896 ANKRD1Q15327 319 aa7.56□□□□□ -1.2
SYNE1-233ENST00000535896 RAPGEF4Q8WZA2 1011 aa7.56□□□□□ -1.2
SYNE1-233ENST00000535896 SPTLC3Q9NUV7 552 aa7.56□□□□□ -1.2
SYNE1-233ENST00000535896 RBM27Q9P2N5 1060 aaKnown RBP7.56□□□□□ -1.2
SYNE1-233ENST00000535896 SNX14Q9Y5W7 946 aa7.56□□□□□ -1.2
SYNE1-233ENST00000535896 TNS2Q63HR2 1409 aa7.55□□□□□ -1.2
SYNE1-233ENST00000535896 COL15A1P39059 1388 aa7.55□□□□□ -1.2
SYNE1-233ENST00000535896 HEG1Q9ULI3 1381 aa7.55□□□□□ -1.2
SYNE1-233ENST00000535896 UTYO14607 1347 aa7.55□□□□□ -1.2
SYNE1-233ENST00000535896 GOLGA6L6A8MZA4 724 aa7.55□□□□□ -1.2
SYNE1-233ENST00000535896 PTMAP06454 111 aaKnown RBP7.55□□□□□ -1.2
SYNE1-233ENST00000535896 PSMA5P28066 241 aa7.55□□□□□ -1.2
SYNE1-233ENST00000535896 BEND3Q5T5X7 828 aa7.55□□□□□ -1.2
SYNE1-233ENST00000535896 NYAP1Q6ZVC0 841 aa7.55□□□□□ -1.2
SYNE1-233ENST00000535896 PPP1R42Q7Z4L9 355 aa7.55□□□□□ -1.2
SYNE1-233ENST00000535896 USP48Q86UV5 1035 aa7.55□□□□□ -1.2
SYNE1-233ENST00000535896 SEPT12Q8IYM1 358 aa7.55□□□□□ -1.2
SYNE1-233ENST00000535896 DNAAF4Q8WXU2 420 aa7.55□□□□□ -1.2
SYNE1-233ENST00000535896 SMC3Q9UQE7 1217 aa7.55□□□□□ -1.2
SYNE1-233ENST00000535896 MEGF6O75095 1541 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 UQCRHLA0A096LP55 91 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 SRGAP3O43295 1099 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 SURF6O75683 361 aaKnown RBP7.54□□□□□ -1.2
SYNE1-233ENST00000535896 UQCRHP07919 91 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 ZKSCAN1P17029 563 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-233ENST00000535896 TATP17735 454 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-233ENST00000535896 EIF4A1P60842 406 aaKnown RBP7.54□□□□□ -1.2
SYNE1-233ENST00000535896 DDB1Q16531 1140 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 AMOTQ4VCS5 1084 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 CLASRPQ8N2M8 674 aaKnown RBP7.54□□□□□ -1.2
SYNE1-233ENST00000535896 ANKK1Q8NFD2 765 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 IL17REQ8NFR9 667 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 MYRIPQ8NFW9 859 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 EVI5LQ96CN4 794 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 FUCA2Q9BTY2 467 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 DIAPH3Q9NSV4 1193 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 ECHDC1Q9NTX5 307 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 HMG20BQ9P0W2 317 aa7.54□□□□□ -1.2
SYNE1-233ENST00000535896 NSFL1CQ9UNZ2 370 aaKnown RBP7.54□□□□□ -1.2
SYNE1-233ENST00000535896 AFDNP55196 1824 aaKnown RBP7.53□□□□□ -1.2
SYNE1-233ENST00000535896 PKD1L3Q7Z443 1732 aa7.53□□□□□ -1.2
SYNE1-233ENST00000535896 ADCY9O60503 1353 aa7.53□□□□□ -1.2
SYNE1-233ENST00000535896 EXOC5O00471 708 aa7.53□□□□□ -1.2
SYNE1-233ENST00000535896 SYT1P21579 422 aa7.53□□□□□ -1.2
SYNE1-233ENST00000535896 AK2P54819 239 aa7.53□□□□□ -1.2
SYNE1-233ENST00000535896 TSGA10IPQ3SY00 556 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms