RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-205ENST00000535375 PERM1Q5SV97 790 aa9.58□□□□□ -0.88
PRKDC-205ENST00000535375 ALYREFQ86V81 257 aaKnown RBP9.58□□□□□ -0.88
PRKDC-205ENST00000535375 SPACA7Q96KW9 195 aa9.58□□□□□ -0.88
PRKDC-205ENST00000535375 SUV39H2Q9H5I1 410 aa9.58□□□□□ -0.88
PRKDC-205ENST00000535375 FRRS1LQ9P0K9 344 aa9.58□□□□□ -0.88
PRKDC-205ENST00000535375 FZD6O60353 706 aa9.57□□□□□ -0.88
PRKDC-205ENST00000535375 XKR5Q6UX68 686 aa9.57□□□□□ -0.88
PRKDC-205ENST00000535375 TRIM11Q96F44 468 aa9.57□□□□□ -0.88
PRKDC-205ENST00000535375 SMG9Q9H0W8 520 aaKnown RBP9.57□□□□□ -0.88
PRKDC-205ENST00000535375 CCDC87Q9NVE4 849 aa9.57□□□□□ -0.88
PRKDC-205ENST00000535375 TMEM63CQ9P1W3 806 aa9.57□□□□□ -0.88
PRKDC-205ENST00000535375 A6NHS1 94 aa9.56□□□□□ -0.88
PRKDC-205ENST00000535375 PRRT3Q5FWE3 981 aa9.56□□□□□ -0.88
PRKDC-205ENST00000535375 TRAPPC3LQ5T215 181 aa9.56□□□□□ -0.88
PRKDC-205ENST00000535375 TRAIPQ9BWF2 469 aa9.56□□□□□ -0.88
PRKDC-205ENST00000535375 GNEQ9Y223 722 aaKnown RBP9.56□□□□□ -0.88
PRKDC-205ENST00000535375 NDUFB5O43674 189 aa9.55□□□□□ -0.88
PRKDC-205ENST00000535375 HOXD8P13378 290 aaPredicted RBP9.55□□□□□ -0.88
PRKDC-205ENST00000535375 AFF1P51825 1210 aaKnown RBP9.55□□□□□ -0.88
PRKDC-205ENST00000535375 TRIM28Q13263 835 aaKnown RBP9.55□□□□□ -0.88
PRKDC-205ENST00000535375 NCAPG2Q86XI2 1143 aa9.55□□□□□ -0.88
PRKDC-205ENST00000535375 PLD4Q96BZ4 506 aa9.55□□□□□ -0.88
PRKDC-205ENST00000535375 LPIN3Q9BQK8 851 aa9.55□□□□□ -0.88
PRKDC-205ENST00000535375 BIN2Q9UBW5 565 aaPredicted RBP9.55□□□□□ -0.88
PRKDC-205ENST00000535375 PDIA4P13667 645 aaKnown RBP9.54□□□□□ -0.88
PRKDC-205ENST00000535375 CES1P23141 567 aa9.54□□□□□ -0.88
PRKDC-205ENST00000535375 COL8A1P27658 744 aa9.54□□□□□ -0.88
PRKDC-205ENST00000535375 PLA2G4EQ3MJ16 856 aa9.54□□□□□ -0.88
PRKDC-205ENST00000535375 TTC9Q92623 222 aa9.54□□□□□ -0.88
PRKDC-205ENST00000535375 PMEPA1Q969W9 287 aa9.54□□□□□ -0.88
PRKDC-205ENST00000535375 SOWAHDA6NJG2 315 aa9.53□□□□□ -0.88
PRKDC-205ENST00000535375 CYP2E1P05181 493 aaPredicted RBP9.53□□□□□ -0.88
PRKDC-205ENST00000535375 NID1P14543 1247 aa9.53□□□□□ -0.88
PRKDC-205ENST00000535375 KCNA1Q09470 495 aa9.53□□□□□ -0.88
PRKDC-205ENST00000535375 TMC1Q8TDI8 760 aa9.53□□□□□ -0.88
PRKDC-205ENST00000535375 CNTN3Q9P232 1028 aa9.53□□□□□ -0.88
PRKDC-205ENST00000535375 PATL2C9JE40 543 aaKnown RBP9.52□□□□□ -0.89
PRKDC-205ENST00000535375 MSTNO14793 375 aa9.52□□□□□ -0.89
PRKDC-205ENST00000535375 PHACTR2O75167 634 aa9.52□□□□□ -0.89
PRKDC-205ENST00000535375 ARHGAP4P98171 946 aa9.52□□□□□ -0.89
PRKDC-205ENST00000535375 COL9A3Q14050 684 aaPredicted RBP9.52□□□□□ -0.89
PRKDC-205ENST00000535375 WFDC8Q8IUA0 241 aa9.52□□□□□ -0.89
PRKDC-205ENST00000535375 C1orf127Q8N9H9 656 aa9.52□□□□□ -0.89
PRKDC-205ENST00000535375 SPATA31C1P0DKV0 1188 aa9.51□□□□□ -0.89
PRKDC-205ENST00000535375 RAC1P63000 192 aa9.51□□□□□ -0.89
PRKDC-205ENST00000535375 PDE3BQ13370 1112 aa9.51□□□□□ -0.89
PRKDC-205ENST00000535375 ECM1Q16610 540 aa9.51□□□□□ -0.89
PRKDC-205ENST00000535375 COL13A1Q5TAT6 717 aaPredicted RBP9.51□□□□□ -0.89
PRKDC-205ENST00000535375 GDF6Q6KF10 455 aaPredicted RBP9.51□□□□□ -0.89
PRKDC-205ENST00000535375 DMRTC2Q8IXT2 367 aaPredicted RBP9.51□□□□□ -0.89
PRKDC-205ENST00000535375 GJD3Q8N144 294 aa9.51□□□□□ -0.89
PRKDC-205ENST00000535375 SNX29Q8TEQ0 813 aa9.51□□□□□ -0.89
PRKDC-205ENST00000535375 KANSL3Q9P2N6 904 aa9.51□□□□□ -0.89
PRKDC-205ENST00000535375 TNFRSF21O75509 655 aa9.5□□□□□ -0.89
PRKDC-205ENST00000535375 SMNDC1O75940 238 aaKnown RBP eCLIP9.5□□□□□ -0.89
PRKDC-205ENST00000535375 MSL1Q68DK7 614 aa9.5□□□□□ -0.89
PRKDC-205ENST00000535375 CITED4Q96RK1 184 aa9.5□□□□□ -0.89
PRKDC-205ENST00000535375 FAM177BA6PVY3 158 aa9.49□□□□□ -0.89
PRKDC-205ENST00000535375 KIF4AO95239 1232 aa9.49□□□□□ -0.89
PRKDC-205ENST00000535375 NEFLP07196 543 aa9.49□□□□□ -0.89
PRKDC-205ENST00000535375 IVNS1ABPQ9Y6Y0 642 aa9.49□□□□□ -0.89
PRKDC-205ENST00000535375 KRBA1A5PL33 1030 aa9.48□□□□□ -0.89
PRKDC-205ENST00000535375 FAM229AH3BQW9 127 aa9.48□□□□□ -0.89
PRKDC-205ENST00000535375 APBA3O96018 575 aa9.48□□□□□ -0.89
PRKDC-205ENST00000535375 GRIK5Q16478 980 aa9.48□□□□□ -0.89
PRKDC-205ENST00000535375 CEP135Q66GS9 1140 aa9.48□□□□□ -0.89
PRKDC-205ENST00000535375 IL22RA1Q8N6P7 574 aa9.48□□□□□ -0.89
PRKDC-205ENST00000535375 SPOCK3Q9BQ16 436 aa9.48□□□□□ -0.89
PRKDC-205ENST00000535375 FOXD3Q9UJU5 478 aaPredicted RBP9.48□□□□□ -0.89
PRKDC-205ENST00000535375 ITGB2P05107 769 aa9.47□□□□□ -0.89
PRKDC-205ENST00000535375 ATP11AP98196 1134 aa9.47□□□□□ -0.89
PRKDC-205ENST00000535375 CACTIN-AS1Q8N1I8 211 aa9.47□□□□□ -0.89
PRKDC-205ENST00000535375 CEP120Q8N960 986 aa9.47□□□□□ -0.89
PRKDC-205ENST00000535375 RASSF4Q9H2L5 321 aa9.47□□□□□ -0.89
PRKDC-205ENST00000535375 CHRDQ9H2X0 955 aa9.47□□□□□ -0.89
PRKDC-205ENST00000535375 SALL4Q9UJQ4 1053 aa9.47□□□□□ -0.89
PRKDC-205ENST00000535375 A0A0A0MRY4 1105 aa9.46□□□□□ -0.9
PRKDC-205ENST00000535375 EREGO14944 169 aa9.46□□□□□ -0.9
PRKDC-205ENST00000535375 SUZ12Q15022 739 aaKnown RBP9.46□□□□□ -0.9
PRKDC-205ENST00000535375 AEBP1Q8IUX7 1158 aa9.46□□□□□ -0.9
PRKDC-205ENST00000535375 PBX4Q9BYU1 374 aa9.46□□□□□ -0.9
PRKDC-205ENST00000535375 TRIM33Q9UPN9 1127 aa9.46□□□□□ -0.9
PRKDC-205ENST00000535375 AMOTL2Q9Y2J4 779 aa9.46□□□□□ -0.9
PRKDC-205ENST00000535375 EDN3P14138 238 aa9.45□□□□□ -0.9
PRKDC-205ENST00000535375 DTWD1Q8N5C7 304 aa9.45□□□□□ -0.9
PRKDC-205ENST00000535375 NACC1Q96RE7 527 aa9.45□□□□□ -0.9
PRKDC-205ENST00000535375 LACRTQ9GZZ8 138 aa9.45□□□□□ -0.9
PRKDC-205ENST00000535375 ZFYVE28Q9HCC9 887 aa9.45□□□□□ -0.9
PRKDC-205ENST00000535375 ELNP15502 786 aa9.44□□□□□ -0.9
PRKDC-205ENST00000535375 MUC3BQ9H195 1237 aa9.44□□□□□ -0.9
PRKDC-205ENST00000535375 PROCP04070 461 aa9.43□□□□□ -0.9
PRKDC-205ENST00000535375 MAPK1P28482 360 aa9.43□□□□□ -0.9
PRKDC-205ENST00000535375 GRIK4Q16099 956 aa9.43□□□□□ -0.9
PRKDC-205ENST00000535375 DMRTB1Q96MA1 342 aa9.43□□□□□ -0.9
PRKDC-205ENST00000535375 DCTN4Q9UJW0 460 aa9.43□□□□□ -0.9
PRKDC-205ENST00000535375 C1QTNF9BB2RNN3 333 aa9.42□□□□□ -0.9
PRKDC-205ENST00000535375 PTPRAP18433 802 aa9.42□□□□□ -0.9
PRKDC-205ENST00000535375 CDC27P30260 824 aa9.42□□□□□ -0.9
PRKDC-205ENST00000535375 FMR1NBQ8N0W7 255 aaPredicted RBP9.42□□□□□ -0.9
PRKDC-205ENST00000535375 FAM129BQ96TA1 746 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms