RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 ANKRD44Q8N8A2 993 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 FSIP1Q8NA03 581 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 BRF1Q92994 677 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 HCLS1P14317 486 aaPredicted RBP17■□□□□ 0.31
PCDHA9-202ENST00000532602 GNAQP50148 359 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 VSIG10Q8N0Z9 540 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 GBP3Q9H0R5 595 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 RBM8AQ9Y5S9 174 aaKnown RBP17■□□□□ 0.31
PCDHA9-202ENST00000532602 NF2P35240 595 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 ERMNQ8TAM6 284 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 KIAA0754O94854 1291 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 IDEP14735 1019 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 MCM5P33992 734 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 MCMDC2Q4G0Z9 681 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 KANK3Q6NY19 840 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 CNNM2Q9H8M5 875 aa17■□□□□ 0.31
PCDHA9-202ENST00000532602 DDX19AQ9NUU7 478 aaKnown RBP17■□□□□ 0.31
PCDHA9-202ENST00000532602 PRIM1P49642 420 aaKnown RBP16.99■□□□□ 0.31
PCDHA9-202ENST00000532602 HEATR3Q7Z4Q2 680 aa16.99■□□□□ 0.31
PCDHA9-202ENST00000532602 SPDYE4A6NLX3 237 aa16.99■□□□□ 0.31
PCDHA9-202ENST00000532602 USO1O60763 962 aaKnown RBP16.99■□□□□ 0.31
PCDHA9-202ENST00000532602 ESR2Q92731 530 aa16.99■□□□□ 0.31
PCDHA9-202ENST00000532602 TMX1Q9H3N1 280 aa16.99■□□□□ 0.31
PCDHA9-202ENST00000532602 TOP1P11387 765 aaKnown RBP16.99■□□□□ 0.31
PCDHA9-202ENST00000532602 Q6ZUG5 572 aa16.99■□□□□ 0.31
PCDHA9-202ENST00000532602 TNPO1Q92973 898 aaKnown RBP16.99■□□□□ 0.31
PCDHA9-202ENST00000532602 BMP15O95972 392 aa16.99■□□□□ 0.31
PCDHA9-202ENST00000532602 MYO5CQ9NQX4 1742 aa16.99■□□□□ 0.31
PCDHA9-202ENST00000532602 FAM114A1Q8IWE2 563 aa16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 CCDC97Q96F63 343 aaPredicted RBP16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 ZC3H12CQ9C0D7 883 aaKnown RBP16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 B4DLN1 442 aa16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 MRPL12P52815 198 aaKnown RBP16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 CEP85Q6P2H3 762 aa16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 STX6O43752 255 aa16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 HDAC1Q13547 482 aaPredicted RBP16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 ZNF790Q6PG37 636 aa16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 A1BGP04217 495 aa16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 SAP30BPQ9UHR5 308 aaKnown RBP16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 YEATS4O95619 227 aa16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 LTKP29376 864 aa16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 DRC1Q96MC2 740 aa16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 USP21Q9UK80 565 aa16.98■□□□□ 0.31
PCDHA9-202ENST00000532602 IL13P35225 146 aa16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 PLS1Q14651 629 aa16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 CCDC40Q4G0X9 1142 aa16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 KIF5CO60282 957 aa16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 LINS1Q8NG48 757 aa16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 KLHDC4Q8TBB5 520 aa16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 CPLX3Q8WVH0 158 aa16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 GJA3Q9Y6H8 435 aa16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 MTIF2P46199 727 aaKnown RBP16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 ZNF594Q96JF6 807 aaPredicted RBP16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 SLAIN2Q9P270 581 aa16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 YEATS2Q9ULM3 1422 aa16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 UBXN4Q92575 508 aa16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 ADGBQ8N7X0 1667 aa16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 PLCG2P16885 1265 aa16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 RBM10P98175 930 aaKnown RBP16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 TDRD12Q587J7 1177 aaKnown RBP16.97■□□□□ 0.31
PCDHA9-202ENST00000532602 TBCAO75347 108 aaKnown RBP16.96■□□□□ 0.31
PCDHA9-202ENST00000532602 ESYT1Q9BSJ8 1104 aa16.96■□□□□ 0.31
PCDHA9-202ENST00000532602 RBM27Q9P2N5 1060 aaKnown RBP16.96■□□□□ 0.31
PCDHA9-202ENST00000532602 SYCP3Q8IZU3 236 aa16.96■□□□□ 0.31
PCDHA9-202ENST00000532602 JDP2Q8WYK2 163 aa16.96■□□□□ 0.31
PCDHA9-202ENST00000532602 RBM17Q96I25 401 aaKnown RBP16.96■□□□□ 0.31
PCDHA9-202ENST00000532602 TCERG1LQ5VWI1 586 aa16.96■□□□□ 0.31
PCDHA9-202ENST00000532602 USP37Q86T82 979 aa16.96■□□□□ 0.31
PCDHA9-202ENST00000532602 FERMT2Q96AC1 680 aa16.96■□□□□ 0.31
PCDHA9-202ENST00000532602 EDC4Q6P2E9 1401 aaKnown RBP16.96■□□□□ 0.3
PCDHA9-202ENST00000532602 EYA3Q99504 573 aa16.96■□□□□ 0.3
PCDHA9-202ENST00000532602 MMRN2Q9H8L6 949 aa16.96■□□□□ 0.3
PCDHA9-202ENST00000532602 MCM9Q9NXL9 1143 aa16.95■□□□□ 0.3
PCDHA9-202ENST00000532602 ZBTB43O43298 467 aa16.95■□□□□ 0.3
PCDHA9-202ENST00000532602 SBNO1A3KN83 1393 aa16.95■□□□□ 0.3
PCDHA9-202ENST00000532602 RXRAP19793 462 aa16.95■□□□□ 0.3
PCDHA9-202ENST00000532602 CCDC174Q6PII3 467 aa16.95■□□□□ 0.3
PCDHA9-202ENST00000532602 CCDC91Q7Z6B0 441 aa16.95■□□□□ 0.3
PCDHA9-202ENST00000532602 HOOK3Q86VS8 718 aa16.95■□□□□ 0.3
PCDHA9-202ENST00000532602 PUS7Q96PZ0 661 aaKnown RBP16.95■□□□□ 0.3
PCDHA9-202ENST00000532602 PAFAH1B1P43034 410 aa16.95■□□□□ 0.3
PCDHA9-202ENST00000532602 DNA2P51530 1060 aa16.95■□□□□ 0.3
PCDHA9-202ENST00000532602 FAM193AP78312 1265 aa16.95■□□□□ 0.3
PCDHA9-202ENST00000532602 CNBD1Q8NA66 436 aa16.95■□□□□ 0.3
PCDHA9-202ENST00000532602 ZKSCAN3Q9BRR0 538 aa16.95■□□□□ 0.3
PCDHA9-202ENST00000532602 ITGA6P23229 1130 aa16.94■□□□□ 0.3
PCDHA9-202ENST00000532602 NUP88Q99567 741 aaPredicted RBP16.94■□□□□ 0.3
PCDHA9-202ENST00000532602 RTN1Q16799 776 aa16.94■□□□□ 0.3
PCDHA9-202ENST00000532602 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.94■□□□□ 0.3
PCDHA9-202ENST00000532602 CDCA7Q9BWT1 371 aaPredicted RBP16.94■□□□□ 0.3
PCDHA9-202ENST00000532602 LUZP1Q86V48 1076 aa16.94■□□□□ 0.3
PCDHA9-202ENST00000532602 CRACR2AQ9BSW2 395 aa16.94■□□□□ 0.3
PCDHA9-202ENST00000532602 ALG1Q9BT22 464 aa16.94■□□□□ 0.3
PCDHA9-202ENST00000532602 GSTTP1A0A1W2PQM5 241 aa16.93■□□□□ 0.3
PCDHA9-202ENST00000532602 TMX3Q96JJ7 454 aa16.93■□□□□ 0.3
PCDHA9-202ENST00000532602 PRKCSHP14314 528 aaPredicted RBP16.93■□□□□ 0.3
PCDHA9-202ENST00000532602 CCDC102BQ68D86 513 aa16.93■□□□□ 0.3
PCDHA9-202ENST00000532602 SLC52A2Q9HAB3 445 aa16.93■□□□□ 0.3
PCDHA9-202ENST00000532602 MCM3P25205 808 aa16.93■□□□□ 0.3
PCDHA9-202ENST00000532602 CTNNA2P26232 953 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms