RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 IGFLR1Q9H665 355 aa6.76□□□□□ -1.33
CD44-233ENST00000531141 ENAMQ9NRM1 1142 aa6.76□□□□□ -1.33
CD44-233ENST00000531141 CNTN3Q9P232 1028 aa6.76□□□□□ -1.33
CD44-233ENST00000531141 NAGPAQ9UK23 515 aa6.76□□□□□ -1.33
CD44-233ENST00000531141 SHISA8B8ZZ34 492 aa6.75□□□□□ -1.33
CD44-233ENST00000531141 CPNE3O75131 537 aaKnown RBP6.75□□□□□ -1.33
CD44-233ENST00000531141 CYP2E1P05181 493 aaPredicted RBP6.75□□□□□ -1.33
CD44-233ENST00000531141 EIF2AK2P19525 551 aaKnown RBP6.75□□□□□ -1.33
CD44-233ENST00000531141 ORC1Q13415 861 aa6.75□□□□□ -1.33
CD44-233ENST00000531141 CHSY3Q70JA7 882 aa6.75□□□□□ -1.33
CD44-233ENST00000531141 C1orf127Q8N9H9 656 aa6.75□□□□□ -1.33
CD44-233ENST00000531141 NIF3L1Q9GZT8 377 aa6.75□□□□□ -1.33
CD44-233ENST00000531141 RBSNQ9H1K0 784 aa6.75□□□□□ -1.33
CD44-233ENST00000531141 KANSL3Q9P2N6 904 aa6.75□□□□□ -1.33
CD44-233ENST00000531141 ANKRD33BA6NCL7 494 aa6.74□□□□□ -1.33
CD44-233ENST00000531141 ZBTB42B2RXF5 422 aa6.74□□□□□ -1.33
CD44-233ENST00000531141 EREGO14944 169 aa6.74□□□□□ -1.33
CD44-233ENST00000531141 GHRHP01286 108 aa6.74□□□□□ -1.33
CD44-233ENST00000531141 EDN3P14138 238 aa6.74□□□□□ -1.33
CD44-233ENST00000531141 AMPD1P23109 780 aa6.74□□□□□ -1.33
CD44-233ENST00000531141 MLLT1Q03111 559 aaPredicted RBP6.74□□□□□ -1.33
CD44-233ENST00000531141 FAM35AQ86V20 835 aa6.74□□□□□ -1.33
CD44-233ENST00000531141 NPAS4Q8IUM7 802 aa6.74□□□□□ -1.33
CD44-233ENST00000531141 SPACA7Q96KW9 195 aa6.74□□□□□ -1.33
CD44-233ENST00000531141 CSRNP1Q96S65 589 aa6.74□□□□□ -1.33
CD44-233ENST00000531141 ZFYVE28Q9HCC9 887 aa6.74□□□□□ -1.33
CD44-233ENST00000531141 FRRS1LQ9P0K9 344 aa6.74□□□□□ -1.33
CD44-233ENST00000531141 LOC102724428A0A0B4J2F2 783 aa6.73□□□□□ -1.33
CD44-233ENST00000531141 PNMA6FA0A0J9YX94 578 aa6.73□□□□□ -1.33
CD44-233ENST00000531141 EIF1AYO14602 144 aaKnown RBP6.73□□□□□ -1.33
CD44-233ENST00000531141 ARHGEF15O94989 841 aa6.73□□□□□ -1.33
CD44-233ENST00000531141 P4HBP07237 508 aaKnown RBP6.73□□□□□ -1.33
CD44-233ENST00000531141 CPB1P15086 417 aa6.73□□□□□ -1.33
CD44-233ENST00000531141 SIK1P57059 783 aa6.73□□□□□ -1.33
CD44-233ENST00000531141 ATP2B2Q01814 1243 aa6.73□□□□□ -1.33
CD44-233ENST00000531141 PLCB3Q01970 1234 aa6.73□□□□□ -1.33
CD44-233ENST00000531141 ENOX2Q16206 610 aaKnown RBP6.73□□□□□ -1.33
CD44-233ENST00000531141 COL13A1Q5TAT6 717 aaPredicted RBP6.73□□□□□ -1.33
CD44-233ENST00000531141 NCAPG2Q86XI2 1143 aa6.73□□□□□ -1.33
CD44-233ENST00000531141 FBF1Q8TES7 1133 aa6.73□□□□□ -1.33
CD44-233ENST00000531141 SALL4Q9UJQ4 1053 aa6.73□□□□□ -1.33
CD44-233ENST00000531141 CCDC9Q9Y3X0 531 aaKnown RBP6.73□□□□□ -1.33
CD44-233ENST00000531141 ALBP02768 609 aa6.72□□□□□ -1.33
CD44-233ENST00000531141 DGKGP49619 791 aa6.72□□□□□ -1.33
CD44-233ENST00000531141 FGD1P98174 961 aa6.72□□□□□ -1.33
CD44-233ENST00000531141 PSAPL1Q6NUJ1 521 aa6.72□□□□□ -1.33
CD44-233ENST00000531141 GALNT12Q8IXK2 581 aa6.72□□□□□ -1.33
CD44-233ENST00000531141 NEDD1Q8NHV4 660 aa6.72□□□□□ -1.33
CD44-233ENST00000531141 BTBD6Q96KE9 485 aa6.72□□□□□ -1.33
CD44-233ENST00000531141 LPIN3Q9BQK8 851 aa6.72□□□□□ -1.33
CD44-233ENST00000531141 PRDM6Q9NQX0 595 aa6.72□□□□□ -1.33
CD44-233ENST00000531141 STARD13Q9Y3M8 1113 aa6.72□□□□□ -1.33
CD44-233ENST00000531141 MAPK8P45983 427 aa6.71□□□□□ -1.34
CD44-233ENST00000531141 PERM1Q5SV97 790 aa6.71□□□□□ -1.34
CD44-233ENST00000531141 ELMSAN1Q6PJG2 1045 aa6.71□□□□□ -1.34
CD44-233ENST00000531141 HFE2Q6ZVN8 426 aa6.71□□□□□ -1.34
CD44-233ENST00000531141 PLD4Q96BZ4 506 aa6.71□□□□□ -1.34
CD44-233ENST00000531141 J3QW42 95 aa6.7□□□□□ -1.34
CD44-233ENST00000531141 M0R082 166 aa6.7□□□□□ -1.34
CD44-233ENST00000531141 ALG1LQ6GMV1 187 aa6.7□□□□□ -1.34
CD44-233ENST00000531141 C20orf204Q6ZNR8 217 aa6.7□□□□□ -1.34
CD44-233ENST00000531141 CEP120Q8N960 986 aa6.7□□□□□ -1.34
CD44-233ENST00000531141 ZNF417Q8TAU3 575 aa6.7□□□□□ -1.34
CD44-233ENST00000531141 TTC9Q92623 222 aa6.7□□□□□ -1.34
CD44-233ENST00000531141 CCDC74AQ96AQ1 378 aa6.7□□□□□ -1.34
CD44-233ENST00000531141 ZNF587Q96SQ5 575 aaPredicted RBP6.7□□□□□ -1.34
CD44-233ENST00000531141 SMG9Q9H0W8 520 aaKnown RBP6.7□□□□□ -1.34
CD44-233ENST00000531141 JPH1Q9HDC5 661 aaPredicted RBP6.7□□□□□ -1.34
CD44-233ENST00000531141 NPHS2Q9NP85 383 aa6.7□□□□□ -1.34
CD44-233ENST00000531141 PODXL2Q9NZ53 605 aa6.7□□□□□ -1.34
CD44-233ENST00000531141 PIK3R2O00459 728 aa6.69□□□□□ -1.34
CD44-233ENST00000531141 LILRB5O75023 590 aa6.69□□□□□ -1.34
CD44-233ENST00000531141 RGS9O75916 674 aaPredicted RBP6.69□□□□□ -1.34
CD44-233ENST00000531141 SMNDC1O75940 238 aaKnown RBP eCLIP6.69□□□□□ -1.34
CD44-233ENST00000531141 ATP11AP98196 1134 aa6.69□□□□□ -1.34
CD44-233ENST00000531141 EAPPQ56P03 285 aaPredicted RBP6.69□□□□□ -1.34
CD44-233ENST00000531141 USPL1Q5W0Q7 1092 aa6.69□□□□□ -1.34
CD44-233ENST00000531141 PODNQ7Z5L7 613 aa6.69□□□□□ -1.34
CD44-233ENST00000531141 MICALL1Q8N3F8 863 aa6.69□□□□□ -1.34
CD44-233ENST00000531141 PBX4Q9BYU1 374 aa6.69□□□□□ -1.34
CD44-233ENST00000531141 PRPF40AO75400 957 aaKnown RBP6.68□□□□□ -1.34
CD44-233ENST00000531141 POLR3DP05423 398 aaPredicted RBP6.68□□□□□ -1.34
CD44-233ENST00000531141 LDHBP07195 334 aaKnown RBP6.68□□□□□ -1.34
CD44-233ENST00000531141 CACTIN-AS1Q8N1I8 211 aa6.68□□□□□ -1.34
CD44-233ENST00000531141 NUDT8Q8WV74 236 aa6.68□□□□□ -1.34
CD44-233ENST00000531141 ZKSCAN3Q9BRR0 538 aa6.68□□□□□ -1.34
CD44-233ENST00000531141 RASSF4Q9H2L5 321 aa6.68□□□□□ -1.34
CD44-233ENST00000531141 RRAGCQ9HB90 399 aa6.68□□□□□ -1.34
CD44-233ENST00000531141 DZANK1Q9NVP4 752 aa6.68□□□□□ -1.34
CD44-233ENST00000531141 MKL2Q9ULH7 1088 aa6.68□□□□□ -1.34
CD44-233ENST00000531141 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.68□□□□□ -1.34
CD44-233ENST00000531141 ACPPP15309 386 aa6.67□□□□□ -1.34
CD44-233ENST00000531141 HOXB4P17483 251 aaPredicted RBP6.67□□□□□ -1.34
CD44-233ENST00000531141 KCNMA1Q12791 1236 aa6.67□□□□□ -1.34
CD44-233ENST00000531141 PEAR1Q5VY43 1037 aaPredicted RBP6.67□□□□□ -1.34
CD44-233ENST00000531141 FBXO33Q7Z6M2 555 aa6.67□□□□□ -1.34
CD44-233ENST00000531141 TMEM102Q8N9M5 508 aaPredicted RBP6.67□□□□□ -1.34
CD44-233ENST00000531141 OSMRQ99650 979 aa6.67□□□□□ -1.34
CD44-233ENST00000531141 BHLHE41Q9C0J9 482 aaPredicted RBP6.67□□□□□ -1.34
CD44-233ENST00000531141 LATS2Q9NRM7 1088 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms