RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 GSX2Q9BZM3 304 aa5.32□□□□□ -1.56
CD44-229ENST00000528672 LATS2Q9NRM7 1088 aa5.32□□□□□ -1.56
CD44-229ENST00000528672 BRPF3Q9ULD4 1205 aa5.32□□□□□ -1.56
CD44-229ENST00000528672 SHISA8B8ZZ34 492 aa5.31□□□□□ -1.56
CD44-229ENST00000528672 RPLP1P05386 114 aaKnown RBP5.31□□□□□ -1.56
CD44-229ENST00000528672 HOXD8P13378 290 aaPredicted RBP5.31□□□□□ -1.56
CD44-229ENST00000528672 ALAS2P22557 587 aa5.31□□□□□ -1.56
CD44-229ENST00000528672 MAPK8P45983 427 aa5.31□□□□□ -1.56
CD44-229ENST00000528672 DGKGP49619 791 aa5.31□□□□□ -1.56
CD44-229ENST00000528672 MLLT1Q03111 559 aaPredicted RBP5.31□□□□□ -1.56
CD44-229ENST00000528672 C1orf229Q6ZS94 237 aaPredicted RBP5.31□□□□□ -1.56
CD44-229ENST00000528672 GJD3Q8N144 294 aa5.31□□□□□ -1.56
CD44-229ENST00000528672 GIPC2Q8TF65 315 aa5.31□□□□□ -1.56
CD44-229ENST00000528672 ASB16Q96NS5 453 aa5.31□□□□□ -1.56
CD44-229ENST00000528672 FAM129BQ96TA1 746 aa5.31□□□□□ -1.56
CD44-229ENST00000528672 KANSL3Q9P2N6 904 aa5.31□□□□□ -1.56
CD44-229ENST00000528672 KLF15Q9UIH9 416 aa5.31□□□□□ -1.56
CD44-229ENST00000528672 MKL2Q9ULH7 1088 aa5.31□□□□□ -1.56
CD44-229ENST00000528672 UBAP1LF5GYI3 381 aa5.3□□□□□ -1.56
CD44-229ENST00000528672 COL8A1P27658 744 aa5.3□□□□□ -1.56
CD44-229ENST00000528672 PLAURQ03405 335 aa5.3□□□□□ -1.56
CD44-229ENST00000528672 FBXO33Q7Z6M2 555 aa5.3□□□□□ -1.56
CD44-229ENST00000528672 C1orf127Q8N9H9 656 aa5.3□□□□□ -1.56
CD44-229ENST00000528672 BTBD6Q96KE9 485 aa5.3□□□□□ -1.56
CD44-229ENST00000528672 CHRDQ9H2X0 955 aa5.3□□□□□ -1.56
CD44-229ENST00000528672 KIAA1522Q9P206 1035 aaPredicted RBP5.3□□□□□ -1.56
CD44-229ENST00000528672 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.3□□□□□ -1.56
CD44-229ENST00000528672 ZBTB42B2RXF5 422 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 GNB5O14775 395 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 EREGO14944 169 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 TREHO43280 583 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 XYLBO75191 536 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 HOXB4P17483 251 aaPredicted RBP5.29□□□□□ -1.56
CD44-229ENST00000528672 ERCC3P19447 782 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 MZF1P28698 734 aaPredicted RBP5.29□□□□□ -1.56
CD44-229ENST00000528672 SOX18P35713 384 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 ADH7P40394 386 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 PCBP4P57723 403 aaKnown RBP5.29□□□□□ -1.56
CD44-229ENST00000528672 EHHADHQ08426 723 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 ALKBH2Q6NS38 261 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 HFE2Q6ZVN8 426 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 CHSY3Q70JA7 882 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 PNMA5Q96PV4 448 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 HHIPQ96QV1 700 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 RBCK1Q9BYM8 510 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 IGFLR1Q9H665 355 aa5.29□□□□□ -1.56
CD44-229ENST00000528672 NOP53Q9NZM5 478 aaKnown RBP5.29□□□□□ -1.56
CD44-229ENST00000528672 FNDC3AQ9Y2H6 1198 aaKnown RBP5.29□□□□□ -1.56
CD44-229ENST00000528672 RBM47A0AV96 593 aaKnown RBP5.28□□□□□ -1.56
CD44-229ENST00000528672 MMP20O60882 483 aa5.28□□□□□ -1.56
CD44-229ENST00000528672 ZNF16P17020 682 aaPredicted RBP5.28□□□□□ -1.56
CD44-229ENST00000528672 NFKB1P19838 968 aa5.28□□□□□ -1.56
CD44-229ENST00000528672 AMPD1P23109 780 aa5.28□□□□□ -1.56
CD44-229ENST00000528672 EPS8L3Q8TE67 593 aaKnown RBP5.28□□□□□ -1.56
CD44-229ENST00000528672 PIK3R5Q8WYR1 880 aa5.28□□□□□ -1.56
CD44-229ENST00000528672 BHMTQ93088 406 aa5.28□□□□□ -1.56
CD44-229ENST00000528672 FRRS1LQ9P0K9 344 aa5.28□□□□□ -1.56
CD44-229ENST00000528672 PNMA6FA0A0J9YX94 578 aa5.27□□□□□ -1.57
CD44-229ENST00000528672 J3QW42 95 aa5.27□□□□□ -1.57
CD44-229ENST00000528672 NDUFB5O43674 189 aa5.27□□□□□ -1.57
CD44-229ENST00000528672 TNFRSF21O75509 655 aa5.27□□□□□ -1.57
CD44-229ENST00000528672 NRLP54845 237 aa5.27□□□□□ -1.57
CD44-229ENST00000528672 GPLD1P80108 840 aa5.27□□□□□ -1.57
CD44-229ENST00000528672 FMR1Q06787 632 aaKnown RBP eCLIP5.27□□□□□ -1.57
CD44-229ENST00000528672 PDE12Q6L8Q7 609 aaKnown RBP5.27□□□□□ -1.57
CD44-229ENST00000528672 LINC00114Q6XXX2 140 aa5.27□□□□□ -1.57
CD44-229ENST00000528672 TRPM4Q8TD43 1214 aa5.27□□□□□ -1.57
CD44-229ENST00000528672 BCL2L13Q9BXK5 485 aa5.27□□□□□ -1.57
CD44-229ENST00000528672 ELP3Q9H9T3 547 aa5.27□□□□□ -1.57
CD44-229ENST00000528672 SPDYE3A6NKU9 549 aa5.26□□□□□ -1.57
CD44-229ENST00000528672 IGSF3O75054 1194 aa5.26□□□□□ -1.57
CD44-229ENST00000528672 USP5P45974 858 aa5.26□□□□□ -1.57
CD44-229ENST00000528672 TBC1D8BQ0IIM8 1120 aa5.26□□□□□ -1.57
CD44-229ENST00000528672 ZNF438Q7Z4V0 828 aa5.26□□□□□ -1.57
CD44-229ENST00000528672 NLRP13Q86W25 1043 aa5.26□□□□□ -1.57
CD44-229ENST00000528672 TTC9Q92623 222 aa5.26□□□□□ -1.57
CD44-229ENST00000528672 NSUN5Q96P11 429 aaKnown RBP5.26□□□□□ -1.57
CD44-229ENST00000528672 SHROOM4Q9ULL8 1493 aa5.26□□□□□ -1.57
CD44-229ENST00000528672 METTL12A8MUP2 240 aa5.25□□□□□ -1.57
CD44-229ENST00000528672 EIF1AYO14602 144 aaKnown RBP5.25□□□□□ -1.57
CD44-229ENST00000528672 RARAP10276 462 aa5.25□□□□□ -1.57
CD44-229ENST00000528672 PCSK2P16519 638 aa5.25□□□□□ -1.57
CD44-229ENST00000528672 ITGB7P26010 798 aa5.25□□□□□ -1.57
CD44-229ENST00000528672 PLCB3Q01970 1234 aa5.25□□□□□ -1.57
CD44-229ENST00000528672 LDLRAD1Q5T700 205 aa5.25□□□□□ -1.57
CD44-229ENST00000528672 XKR5Q6UX68 686 aa5.25□□□□□ -1.57
CD44-229ENST00000528672 C20orf204Q6ZNR8 217 aa5.25□□□□□ -1.57
CD44-229ENST00000528672 DHX32Q7L7V1 743 aaKnown RBP5.25□□□□□ -1.57
CD44-229ENST00000528672 KRTAP1-3Q8IUG1 177 aa5.25□□□□□ -1.57
CD44-229ENST00000528672 DUSP9Q99956 384 aaKnown RBP5.25□□□□□ -1.57
CD44-229ENST00000528672 UBE2OQ9C0C9 1292 aaKnown RBP5.25□□□□□ -1.57
CD44-229ENST00000528672 RRAGCQ9HB90 399 aa5.25□□□□□ -1.57
CD44-229ENST00000528672 TLR7Q9NYK1 1049 aaKnown RBP5.25□□□□□ -1.57
CD44-229ENST00000528672 SLC6A14Q9UN76 642 aa5.25□□□□□ -1.57
CD44-229ENST00000528672 LOC105371045A0A1W2PR82 267 aa5.24□□□□□ -1.57
CD44-229ENST00000528672 C1QTNF9BB2RNN3 333 aa5.24□□□□□ -1.57
CD44-229ENST00000528672 LDHBP07195 334 aaKnown RBP5.24□□□□□ -1.57
CD44-229ENST00000528672 ATP11AP98196 1134 aa5.24□□□□□ -1.57
CD44-229ENST00000528672 C8orf86Q6ZUL3 223 aa5.24□□□□□ -1.57
CD44-229ENST00000528672 CACTIN-AS1Q8N1I8 211 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms