RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 TNNI3KQ59H18 835 aa23.01■■□□□ 1.27
VPS28-207ENST00000526977 KIF2CQ99661 725 aa23.01■■□□□ 1.27
VPS28-207ENST00000526977 FPGT-TNNI3KV9GXZ4 949 aa23.01■■□□□ 1.27
VPS28-207ENST00000526977 AOX1Q06278 1338 aa23.01■■□□□ 1.27
VPS28-207ENST00000526977 CASC1Q6TDU7 716 aa23.01■■□□□ 1.27
VPS28-207ENST00000526977 SLC16A10Q8TF71 515 aa23.01■■□□□ 1.27
VPS28-207ENST00000526977 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.01■■□□□ 1.27
VPS28-207ENST00000526977 GPATCH3Q96I76 525 aa23■■□□□ 1.27
VPS28-207ENST00000526977 AKAP2Q9Y2D5 859 aa23■■□□□ 1.27
VPS28-207ENST00000526977 ANKRD18AQ8IVF6 992 aa22.99■■□□□ 1.27
VPS28-207ENST00000526977 TTC41PQ6P2S7 1318 aa22.99■■□□□ 1.27
VPS28-207ENST00000526977 MROH5Q6ZUA9 1318 aa22.99■■□□□ 1.27
VPS28-207ENST00000526977 DDX46Q7L014 1031 aaKnown RBP22.99■■□□□ 1.27
VPS28-207ENST00000526977 USP26Q9BXU7 913 aa22.99■■□□□ 1.27
VPS28-207ENST00000526977 METTL24Q5JXM2 366 aa22.98■■□□□ 1.27
VPS28-207ENST00000526977 MSL1Q68DK7 614 aa22.98■■□□□ 1.27
VPS28-207ENST00000526977 BRIP1Q9BX63 1249 aa22.98■■□□□ 1.27
VPS28-207ENST00000526977 CCDC8Q9H0W5 538 aaPredicted RBP22.98■■□□□ 1.27
VPS28-207ENST00000526977 ERC2O15083 957 aa22.97■■□□□ 1.27
VPS28-207ENST00000526977 CRY2Q49AN0 593 aa22.97■■□□□ 1.27
VPS28-207ENST00000526977 ECHDC1Q9NTX5 307 aa22.97■■□□□ 1.27
VPS28-207ENST00000526977 BSDC1Q9NW68 430 aaPredicted RBP22.97■■□□□ 1.27
VPS28-207ENST00000526977 KLRG2A4D1S0 409 aaPredicted RBP22.96■■□□□ 1.27
VPS28-207ENST00000526977 RPS8P62241 208 aaKnown RBP22.96■■□□□ 1.27
VPS28-207ENST00000526977 PDE8BO95263 885 aa22.96■■□□□ 1.27
VPS28-207ENST00000526977 PI4K2BQ8TCG2 481 aa22.96■■□□□ 1.27
VPS28-207ENST00000526977 TRIM6-TRIM34B2RNG4 842 aa22.95■■□□□ 1.26
VPS28-207ENST00000526977 RILPL2Q969X0 211 aa22.95■■□□□ 1.26
VPS28-207ENST00000526977 GLRX3O76003 335 aaKnown RBP22.94■■□□□ 1.26
VPS28-207ENST00000526977 RPGRQ92834 1020 aaKnown RBP22.94■■□□□ 1.26
VPS28-207ENST00000526977 SNX21Q969T3 373 aa22.94■■□□□ 1.26
VPS28-207ENST00000526977 NRXN2Q9P2S2 1712 aa22.94■■□□□ 1.26
VPS28-207ENST00000526977 LRP5O75197 1615 aa22.94■■□□□ 1.26
VPS28-207ENST00000526977 VGLL2Q8N8G2 317 aa22.94■■□□□ 1.26
VPS28-207ENST00000526977 CELF1Q92879 486 aaKnown RBP22.94■■□□□ 1.26
VPS28-207ENST00000526977 NEUROD6Q96NK8 337 aa22.94■■□□□ 1.26
VPS28-207ENST00000526977 A0A1B0GUL7 405 aa22.93■■□□□ 1.26
VPS28-207ENST00000526977 TIMM10P62072 90 aa22.93■■□□□ 1.26
VPS28-207ENST00000526977 RBM17Q96I25 401 aaKnown RBP22.93■■□□□ 1.26
VPS28-207ENST00000526977 PDGFDQ9GZP0 370 aaPredicted RBP22.93■■□□□ 1.26
VPS28-207ENST00000526977 DBNLQ9UJU6 430 aaKnown RBP22.93■■□□□ 1.26
VPS28-207ENST00000526977 PDE6BP35913 854 aa22.92■■□□□ 1.26
VPS28-207ENST00000526977 REC8O95072 547 aa22.92■■□□□ 1.26
VPS28-207ENST00000526977 CHMLP26374 656 aa22.92■■□□□ 1.26
VPS28-207ENST00000526977 HOXA10P31260 410 aaPredicted RBP22.92■■□□□ 1.26
VPS28-207ENST00000526977 GRAPQ13588 217 aa22.92■■□□□ 1.26
VPS28-207ENST00000526977 GRAPLQ8TC17 118 aaPredicted RBP22.92■■□□□ 1.26
VPS28-207ENST00000526977 TLR7Q9NYK1 1049 aaKnown RBP22.92■■□□□ 1.26
VPS28-207ENST00000526977 TNRC6CQ9HCJ0 1690 aaKnown RBP22.91■■□□□ 1.26
VPS28-207ENST00000526977 DBNDD2Q9BQY9 259 aa22.91■■□□□ 1.26
VPS28-207ENST00000526977 ANTXR1Q9H6X2 564 aa22.91■■□□□ 1.26
VPS28-207ENST00000526977 ZNF609O15014 1411 aa22.91■■□□□ 1.26
VPS28-207ENST00000526977 PUM3Q15397 648 aaKnown RBP22.91■■□□□ 1.26
VPS28-207ENST00000526977 ATP2B3Q16720 1220 aa22.91■■□□□ 1.26
VPS28-207ENST00000526977 HSCBQ8IWL3 235 aa22.91■■□□□ 1.26
VPS28-207ENST00000526977 CHRNDQ07001 517 aa22.9■■□□□ 1.26
VPS28-207ENST00000526977 ESYT1Q9BSJ8 1104 aa22.9■■□□□ 1.26
VPS28-207ENST00000526977 CASZ1Q86V15 1759 aa22.9■■□□□ 1.26
VPS28-207ENST00000526977 LPIN2Q92539 896 aa22.89■■□□□ 1.26
VPS28-207ENST00000526977 CRAMP1Q96RY5 1269 aa22.89■■□□□ 1.26
VPS28-207ENST00000526977 SLKQ9H2G2 1235 aaPredicted RBP22.89■■□□□ 1.26
VPS28-207ENST00000526977 MINPP1Q9UNW1 487 aa22.89■■□□□ 1.26
VPS28-207ENST00000526977 ATP5JP18859 108 aa22.89■■□□□ 1.25
VPS28-207ENST00000526977 BBOX1O75936 387 aa22.88■■□□□ 1.25
VPS28-207ENST00000526977 MAP4K4O95819 1239 aaPredicted RBP22.88■■□□□ 1.25
VPS28-207ENST00000526977 HELBQ8NG08 1087 aaPredicted RBP22.88■■□□□ 1.25
VPS28-207ENST00000526977 XAGE2Q96GT9 111 aa22.88■■□□□ 1.25
VPS28-207ENST00000526977 FGFR2P21802 821 aa22.87■■□□□ 1.25
VPS28-207ENST00000526977 CCDC158Q5M9N0 1113 aa22.87■■□□□ 1.25
VPS28-207ENST00000526977 ANKRD2Q9GZV1 360 aa22.87■■□□□ 1.25
VPS28-207ENST00000526977 SRGNP10124 158 aa22.87■■□□□ 1.25
VPS28-207ENST00000526977 GORABQ5T7V8 394 aa22.87■■□□□ 1.25
VPS28-207ENST00000526977 SPRYD3Q8NCJ5 442 aa22.87■■□□□ 1.25
VPS28-207ENST00000526977 TAF5LO75529 589 aa22.86■■□□□ 1.25
VPS28-207ENST00000526977 NPR1P16066 1061 aa22.86■■□□□ 1.25
VPS28-207ENST00000526977 IFIT1P09914 478 aaKnown RBP22.86■■□□□ 1.25
VPS28-207ENST00000526977 SLC5A1P13866 664 aa22.86■■□□□ 1.25
VPS28-207ENST00000526977 NFKBIBQ15653 356 aa22.86■■□□□ 1.25
VPS28-207ENST00000526977 CNTROBQ8N137 903 aa22.86■■□□□ 1.25
VPS28-207ENST00000526977 COL4A1P02462 1669 aa22.85■■□□□ 1.25
VPS28-207ENST00000526977 CD2BP2O95400 341 aaKnown RBP22.85■■□□□ 1.25
VPS28-207ENST00000526977 ALDH1B1P30837 517 aa22.85■■□□□ 1.25
VPS28-207ENST00000526977 UBE4AQ14139 1066 aa22.85■■□□□ 1.25
VPS28-207ENST00000526977 TMC4Q7Z404 712 aa22.85■■□□□ 1.25
VPS28-207ENST00000526977 R3HDM1Q15032 1099 aaKnown RBP22.84■■□□□ 1.25
VPS28-207ENST00000526977 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.84■■□□□ 1.25
VPS28-207ENST00000526977 MASTLQ96GX5 879 aa22.84■■□□□ 1.25
VPS28-207ENST00000526977 MTFR1LQ9H019 292 aa22.84■■□□□ 1.25
VPS28-207ENST00000526977 BOLA2Q9H3K6 86 aa22.84■■□□□ 1.25
VPS28-207ENST00000526977 TAF1P21675 1872 aa22.84■■□□□ 1.25
VPS28-207ENST00000526977 RABEP1Q15276 862 aa22.84■■□□□ 1.25
VPS28-207ENST00000526977 ANKRD31Q8N7Z5 1873 aa22.82■■□□□ 1.24
VPS28-207ENST00000526977 H0YIN7 160 aa22.82■■□□□ 1.24
VPS28-207ENST00000526977 ADORA1P30542 326 aa22.82■■□□□ 1.24
VPS28-207ENST00000526977 EVI5LQ96CN4 794 aa22.82■■□□□ 1.24
VPS28-207ENST00000526977 SPEF2Q9C093 1822 aa22.82■■□□□ 1.24
VPS28-207ENST00000526977 TTC39AQ5SRH9 613 aa22.82■■□□□ 1.24
VPS28-207ENST00000526977 ZNF512BQ96KM6 892 aaPredicted RBP22.82■■□□□ 1.24
VPS28-207ENST00000526977 HAUS7Q99871 368 aa22.82■■□□□ 1.24
VPS28-207ENST00000526977 ZBTB7AO95365 584 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms