RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 EPS8L1Q8TE68 723 aa6.77□□□□□ -1.33
CD44-218ENST00000525469 TRIM34Q9BYJ4 488 aa6.77□□□□□ -1.33
CD44-218ENST00000525469 USP19O94966 1318 aa6.76□□□□□ -1.33
CD44-218ENST00000525469 WDR17Q8IZU2 1322 aa6.76□□□□□ -1.33
CD44-218ENST00000525469 USP6P35125 1406 aa6.76□□□□□ -1.33
CD44-218ENST00000525469 NR3C2P08235 984 aa6.76□□□□□ -1.33
CD44-218ENST00000525469 HSPA1AP0DMV8 641 aaKnown RBP6.76□□□□□ -1.33
CD44-218ENST00000525469 HSPA1BP0DMV9 641 aaKnown RBP6.76□□□□□ -1.33
CD44-218ENST00000525469 NPM2Q86SE8 214 aaKnown RBP6.76□□□□□ -1.33
CD44-218ENST00000525469 ZNF775Q96BV0 537 aaPredicted RBP6.76□□□□□ -1.33
CD44-218ENST00000525469 ITPKCQ96DU7 683 aa6.76□□□□□ -1.33
CD44-218ENST00000525469 LRRC4BQ9NT99 713 aa6.76□□□□□ -1.33
CD44-218ENST00000525469 ACEP12821 1306 aa6.76□□□□□ -1.33
CD44-218ENST00000525469 PIK3C2AO00443 1686 aa6.75□□□□□ -1.33
CD44-218ENST00000525469 FSTL1Q12841 308 aa6.75□□□□□ -1.33
CD44-218ENST00000525469 TRIM46Q7Z4K8 759 aa6.75□□□□□ -1.33
CD44-218ENST00000525469 MEIOBQ8N635 442 aa6.75□□□□□ -1.33
CD44-218ENST00000525469 PKNOX2Q96KN3 472 aa6.75□□□□□ -1.33
CD44-218ENST00000525469 TSEN34Q9BSV6 310 aaKnown RBP6.75□□□□□ -1.33
CD44-218ENST00000525469 CARD10Q9BWT7 1032 aa6.75□□□□□ -1.33
CD44-218ENST00000525469 KLF16Q9BXK1 252 aaPredicted RBP6.75□□□□□ -1.33
CD44-218ENST00000525469 ZFAND3Q9H8U3 227 aa6.75□□□□□ -1.33
CD44-218ENST00000525469 RBM19Q9Y4C8 960 aaKnown RBP6.75□□□□□ -1.33
CD44-218ENST00000525469 SPATA31E1Q6ZUB1 1445 aa6.75□□□□□ -1.33
CD44-218ENST00000525469 DEKP35659 375 aaKnown RBP6.74□□□□□ -1.33
CD44-218ENST00000525469 PPP1R26Q5T8A7 1209 aaPredicted RBP6.74□□□□□ -1.33
CD44-218ENST00000525469 MSL1Q68DK7 614 aa6.74□□□□□ -1.33
CD44-218ENST00000525469 ZFP42Q96MM3 310 aa6.74□□□□□ -1.33
CD44-218ENST00000525469 PCDHB9Q9Y5E1 797 aa6.74□□□□□ -1.33
CD44-218ENST00000525469 TNS2Q63HR2 1409 aa6.74□□□□□ -1.33
CD44-218ENST00000525469 IGSF1Q8N6C5 1336 aa6.74□□□□□ -1.33
CD44-218ENST00000525469 POLR3AO14802 1390 aaPredicted RBP6.73□□□□□ -1.33
CD44-218ENST00000525469 TRPM1Q7Z4N2 1603 aa6.73□□□□□ -1.33
CD44-218ENST00000525469 CCDC7Q96M83 1385 aa6.73□□□□□ -1.33
CD44-218ENST00000525469 COL18A1P39060 1754 aa6.73□□□□□ -1.33
CD44-218ENST00000525469 BMP2P12643 396 aa6.73□□□□□ -1.33
CD44-218ENST00000525469 SNRPBP14678 240 aaKnown RBP6.73□□□□□ -1.33
CD44-218ENST00000525469 HMGB2P26583 209 aaKnown RBP6.73□□□□□ -1.33
CD44-218ENST00000525469 NR1H3Q13133 447 aa6.73□□□□□ -1.33
CD44-218ENST00000525469 INTS6LQ5JSJ4 861 aaKnown RBP6.73□□□□□ -1.33
CD44-218ENST00000525469 RNF20Q5VTR2 975 aa6.73□□□□□ -1.33
CD44-218ENST00000525469 LINC00528Q8N1L1 170 aa6.73□□□□□ -1.33
CD44-218ENST00000525469 MTMR14Q8NCE2 650 aa6.73□□□□□ -1.33
CD44-218ENST00000525469 PURBQ96QR8 312 aaKnown RBP6.73□□□□□ -1.33
CD44-218ENST00000525469 CDK19Q9BWU1 502 aa6.73□□□□□ -1.33
CD44-218ENST00000525469 NMRK2Q9NPI5 230 aa6.73□□□□□ -1.33
CD44-218ENST00000525469 KCNQ4P56696 695 aa6.72□□□□□ -1.33
CD44-218ENST00000525469 SYTL4Q96C24 671 aaPredicted RBP6.72□□□□□ -1.33
CD44-218ENST00000525469 OCSTAMPQ9BR26 566 aa6.72□□□□□ -1.33
CD44-218ENST00000525469 PCNTO95613 3336 aa6.71□□□□□ -1.33
CD44-218ENST00000525469 PPIP5K1Q6PFW1 1433 aa6.71□□□□□ -1.34
CD44-218ENST00000525469 FBXO45P0C2W1 286 aa6.71□□□□□ -1.34
CD44-218ENST00000525469 C6orf118Q5T5N4 469 aa6.71□□□□□ -1.34
CD44-218ENST00000525469 ARHGAP27Q6ZUM4 889 aa6.71□□□□□ -1.34
CD44-218ENST00000525469 COL23A1Q86Y22 540 aaPredicted RBP6.71□□□□□ -1.34
CD44-218ENST00000525469 NPAS3Q8IXF0 933 aa6.71□□□□□ -1.34
CD44-218ENST00000525469 KCNH5Q8NCM2 988 aa6.71□□□□□ -1.34
CD44-218ENST00000525469 SMC1BQ8NDV3 1235 aa6.71□□□□□ -1.34
CD44-218ENST00000525469 FLAD1Q8NFF5 587 aa6.71□□□□□ -1.34
CD44-218ENST00000525469 CCNL1Q9UK58 526 aaPredicted RBP6.71□□□□□ -1.34
CD44-218ENST00000525469 KDM2BQ8NHM5 1336 aa6.71□□□□□ -1.34
CD44-218ENST00000525469 ABCC6O95255 1503 aa6.71□□□□□ -1.34
CD44-218ENST00000525469 LY75O60449 1722 aa6.7□□□□□ -1.34
CD44-218ENST00000525469 MAN1A2O60476 641 aa6.7□□□□□ -1.34
CD44-218ENST00000525469 IL2RBP14784 551 aa6.7□□□□□ -1.34
CD44-218ENST00000525469 RAB15P59190 212 aa6.7□□□□□ -1.34
CD44-218ENST00000525469 TREML4Q6UXN2 200 aa6.7□□□□□ -1.34
CD44-218ENST00000525469 SNRKQ9NRH2 765 aa6.7□□□□□ -1.34
CD44-218ENST00000525469 NLRP2Q9NX02 1062 aa6.7□□□□□ -1.34
CD44-218ENST00000525469 CPSF1Q10570 1443 aaKnown RBP6.69□□□□□ -1.34
CD44-218ENST00000525469 ESPNB1AK53 854 aa6.69□□□□□ -1.34
CD44-218ENST00000525469 WFS1O76024 890 aa6.69□□□□□ -1.34
CD44-218ENST00000525469 SRPK2P78362 688 aaKnown RBP6.69□□□□□ -1.34
CD44-218ENST00000525469 MLLT1Q03111 559 aaPredicted RBP6.69□□□□□ -1.34
CD44-218ENST00000525469 Q6ZVU0 165 aa6.69□□□□□ -1.34
CD44-218ENST00000525469 WWC1Q8IX03 1113 aa6.69□□□□□ -1.34
CD44-218ENST00000525469 DDX54Q8TDD1 881 aaKnown RBP6.69□□□□□ -1.34
CD44-218ENST00000525469 TNRC6CQ9HCJ0 1690 aaKnown RBP6.68□□□□□ -1.34
CD44-218ENST00000525469 N4BP2Q86UW6 1770 aaPredicted RBP6.68□□□□□ -1.34
CD44-218ENST00000525469 SLIT3O75094 1523 aa6.68□□□□□ -1.34
CD44-218ENST00000525469 TERTO14746 1132 aaKnown RBP6.68□□□□□ -1.34
CD44-218ENST00000525469 EIF4G2P78344 907 aaKnown RBP eCLIP6.68□□□□□ -1.34
CD44-218ENST00000525469 ARHGEF25Q86VW2 580 aa6.68□□□□□ -1.34
CD44-218ENST00000525469 AIDAQ96BJ3 306 aa6.68□□□□□ -1.34
CD44-218ENST00000525469 RRAGCQ9HB90 399 aa6.68□□□□□ -1.34
CD44-218ENST00000525469 NXF1Q9UBU9 619 aaKnown RBP6.68□□□□□ -1.34
CD44-218ENST00000525469 BCS1LQ9Y276 419 aa6.68□□□□□ -1.34
CD44-218ENST00000525469 ADGRB1O14514 1584 aa6.68□□□□□ -1.34
CD44-218ENST00000525469 CICQ96RK0 1608 aaPredicted RBP6.68□□□□□ -1.34
CD44-218ENST00000525469 PLEKHG2Q9H7P9 1386 aa6.68□□□□□ -1.34
CD44-218ENST00000525469 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.67□□□□□ -1.34
CD44-218ENST00000525469 C9orf131Q5VYM1 1079 aa6.67□□□□□ -1.34
CD44-218ENST00000525469 MPHOSPH9Q99550 1183 aa6.67□□□□□ -1.34
CD44-218ENST00000525469 PRDM10Q9NQV6 1147 aa6.67□□□□□ -1.34
CD44-218ENST00000525469 C5P01031 1676 aa6.67□□□□□ -1.34
CD44-218ENST00000525469 USP47Q96K76 1375 aa6.67□□□□□ -1.34
CD44-218ENST00000525469 PKD1L3Q7Z443 1732 aa6.67□□□□□ -1.34
CD44-218ENST00000525469 TAF1LQ8IZX4 1826 aa6.66□□□□□ -1.34
CD44-218ENST00000525469 QRICH2Q9H0J4 1663 aa6.66□□□□□ -1.34
CD44-218ENST00000525469 TTLL8A6PVC2 850 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms