RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 L3MBTL2Q969R5 705 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 C8orf48Q96LL4 319 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 TMEM74Q96NL1 305 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 SRRTQ9BXP5 876 aaKnown RBP7.22□□□□□ -1.25
USP47-204ENST00000525078 PCGF6Q9BYE7 350 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 UBA5Q9GZZ9 404 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 ZFYVE28Q9HCC9 887 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 ST7Q9NRC1 585 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 TMEM260Q9NX78 707 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 PDZRN3Q9UPQ7 1066 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 MAP4K5Q9Y4K4 846 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 PARP3Q9Y6F1 533 aa7.22□□□□□ -1.25
USP47-204ENST00000525078 EVA1CP58658 441 aa7.21□□□□□ -1.26
USP47-204ENST00000525078 HSP90AB4PQ58FF6 505 aa7.21□□□□□ -1.26
USP47-204ENST00000525078 ZNF787Q6DD87 383 aa7.21□□□□□ -1.26
USP47-204ENST00000525078 POTEAQ6S8J7 498 aa7.21□□□□□ -1.26
USP47-204ENST00000525078 TSHZ1Q6ZSZ6 1077 aa7.21□□□□□ -1.26
USP47-204ENST00000525078 PGBD3Q8N328 593 aa7.21□□□□□ -1.26
USP47-204ENST00000525078 NT5C1AQ9BXI3 368 aa7.21□□□□□ -1.26
USP47-204ENST00000525078 PDPK1O15530 556 aa7.2□□□□□ -1.26
USP47-204ENST00000525078 TRIM37O94972 964 aa7.2□□□□□ -1.26
USP47-204ENST00000525078 POLR3DP05423 398 aaPredicted RBP7.2□□□□□ -1.26
USP47-204ENST00000525078 OS9Q13438 667 aaPredicted RBP7.2□□□□□ -1.26
USP47-204ENST00000525078 MAP3K11Q16584 847 aa7.2□□□□□ -1.26
USP47-204ENST00000525078 PPARGC1BQ86YN6 1023 aaKnown RBP7.2□□□□□ -1.26
USP47-204ENST00000525078 CELF2-AS1Q8N7Q2 184 aa7.2□□□□□ -1.26
USP47-204ENST00000525078 XAGE2Q96GT9 111 aa7.2□□□□□ -1.26
USP47-204ENST00000525078 CNTN3Q9P232 1028 aa7.2□□□□□ -1.26
USP47-204ENST00000525078 FNDC3AQ9Y2H6 1198 aaKnown RBP7.2□□□□□ -1.26
USP47-204ENST00000525078 LEMD3Q9Y2U8 911 aa7.2□□□□□ -1.26
USP47-204ENST00000525078 SUPT16HQ9Y5B9 1047 aaKnown RBP7.2□□□□□ -1.26
USP47-204ENST00000525078 SH3BP5O60239 455 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 PLIN1O60240 522 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 MICAL2O94851 1124 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 CENPBP07199 599 aaPredicted RBP7.19□□□□□ -1.26
USP47-204ENST00000525078 RLBP1P12271 317 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 FSHRP23945 695 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 VARSP26640 1264 aaKnown RBP7.19□□□□□ -1.26
USP47-204ENST00000525078 EXOSC10Q01780 885 aaKnown RBP7.19□□□□□ -1.26
USP47-204ENST00000525078 FAM160A1Q05DH4 1040 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 APOBRQ0VD83 1088 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 SQSTM1Q13501 440 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 TCEA2Q15560 299 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 DDR2Q16832 855 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 PCNX4Q63HM2 1172 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 CCDC81Q6ZN84 652 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 ZDHHC1Q8WTX9 485 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 CNKSR1Q969H4 720 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 EMID1Q96A84 441 aaPredicted RBP7.19□□□□□ -1.26
USP47-204ENST00000525078 TRIM56Q9BRZ2 755 aaKnown RBP7.19□□□□□ -1.26
USP47-204ENST00000525078 UBP1Q9NZI7 540 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 THRAP3Q9Y2W1 955 aaKnown RBP7.19□□□□□ -1.26
USP47-204ENST00000525078 FCF1Q9Y324 198 aaKnown RBP7.19□□□□□ -1.26
USP47-204ENST00000525078 MSRB2Q9Y3D2 182 aa7.19□□□□□ -1.26
USP47-204ENST00000525078 IL2RAP01589 272 aa7.18□□□□□ -1.26
USP47-204ENST00000525078 TKFCQ3LXA3 575 aa7.18□□□□□ -1.26
USP47-204ENST00000525078 FBXL19Q6PCT2 694 aa7.18□□□□□ -1.26
USP47-204ENST00000525078 NKD1Q969G9 470 aa7.18□□□□□ -1.26
USP47-204ENST00000525078 SUV39H2Q9H5I1 410 aa7.18□□□□□ -1.26
USP47-204ENST00000525078 ACTR10Q9NZ32 417 aa7.18□□□□□ -1.26
USP47-204ENST00000525078 KIF3BO15066 747 aa7.17□□□□□ -1.26
USP47-204ENST00000525078 VIL1P09327 827 aaKnown RBP7.17□□□□□ -1.26
USP47-204ENST00000525078 RASGRF1Q13972 1273 aa7.17□□□□□ -1.26
USP47-204ENST00000525078 GRM2Q14416 872 aa7.17□□□□□ -1.26
USP47-204ENST00000525078 MTERF2Q49AM1 385 aa7.17□□□□□ -1.26
USP47-204ENST00000525078 C2orf27AQ580R0 203 aa7.17□□□□□ -1.26
USP47-204ENST00000525078 BRDTQ58F21 947 aaPredicted RBP7.17□□□□□ -1.26
USP47-204ENST00000525078 SNAP47Q5SQN1 464 aa7.17□□□□□ -1.26
USP47-204ENST00000525078 FBXW10Q5XX13 1052 aa7.17□□□□□ -1.26
USP47-204ENST00000525078 SPTY2D1Q68D10 685 aaPredicted RBP7.17□□□□□ -1.26
USP47-204ENST00000525078 CCSAPQ6IQ19 270 aaPredicted RBP7.17□□□□□ -1.26
USP47-204ENST00000525078 KRT26Q7Z3Y9 468 aa7.17□□□□□ -1.26
USP47-204ENST00000525078 TSR2Q969E8 191 aaKnown RBP7.17□□□□□ -1.26
USP47-204ENST00000525078 ZNF775Q96BV0 537 aaPredicted RBP7.17□□□□□ -1.26
USP47-204ENST00000525078 CRBNQ96SW2 442 aa7.17□□□□□ -1.26
USP47-204ENST00000525078 MAPK8IP1Q9UQF2 711 aa7.17□□□□□ -1.26
USP47-204ENST00000525078 ATP8A1Q9Y2Q0 1164 aa7.17□□□□□ -1.26
USP47-204ENST00000525078 UBAP1LF5GYI3 381 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 LILRA1O75019 489 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 ASMTLO95671 621 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 CDKN1CP49918 316 aaPredicted RBP7.16□□□□□ -1.26
USP47-204ENST00000525078 EIF6P56537 245 aaKnown RBP7.16□□□□□ -1.26
USP47-204ENST00000525078 UBE4AQ14139 1066 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 MAP9Q49MG5 647 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 CT47A1Q5JQC4 288 aaPredicted RBP7.16□□□□□ -1.26
USP47-204ENST00000525078 AXDND1Q5T1B0 1012 aaPredicted RBP7.16□□□□□ -1.26
USP47-204ENST00000525078 XKR5Q6UX68 686 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 TRIM67Q6ZTA4 783 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 JAMLQ86YT9 394 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 THAP3Q8WTV1 239 aaPredicted RBP7.16□□□□□ -1.26
USP47-204ENST00000525078 RELTQ969Z4 430 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 SHDQ96IW2 340 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 ESYT1Q9BSJ8 1104 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 RBSNQ9H1K0 784 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 PPT2Q9UMR5 302 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 COMMD10Q9Y6G5 202 aa7.16□□□□□ -1.26
USP47-204ENST00000525078 PAX3P23760 479 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 SEPT6Q14141 434 aa7.15□□□□□ -1.26
USP47-204ENST00000525078 SAFB2Q14151 953 aaKnown RBP eCLIP7.15□□□□□ -1.26
USP47-204ENST00000525078 FAM50AQ14320 339 aaKnown RBP7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms