RNA–Protein interactions for RNA: ENST00000524141.5

SPIDR-225, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 2,761 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-225	ENST00000524141	USHBP1	Q8N6Y0	703 aa		12.01	□□□□□ -0.49
SPIDR-225	ENST00000524141	CHMP4C	Q96CF2	233 aa		12.01	□□□□□ -0.49
SPIDR-225	ENST00000524141	SUCLG2	Q96I99	432 aa		12.01	□□□□□ -0.49
SPIDR-225	ENST00000524141	BICC1	Q9H694	974 aa	Known RBP	12.01	□□□□□ -0.49
SPIDR-225	ENST00000524141	USP16	Q9Y5T5	823 aa		12.01	□□□□□ -0.49
SPIDR-225	ENST00000524141	LTK	P29376	864 aa		12.01	□□□□□ -0.49
SPIDR-225	ENST00000524141	KCNJ6	P48051	423 aa		12.01	□□□□□ -0.49
SPIDR-225	ENST00000524141	CWF19L2	Q2TBE0	894 aa	Known RBP	12.01	□□□□□ -0.49
SPIDR-225	ENST00000524141	FBXO38	Q6PIJ6	1188 aa		12.01	□□□□□ -0.49
SPIDR-225	ENST00000524141	ABTB2	Q8N961	1025 aa		12.01	□□□□□ -0.49
SPIDR-225	ENST00000524141	CCDC150	Q8NCX0	1101 aa		12.01	□□□□□ -0.49
SPIDR-225	ENST00000524141	TLR7	Q9NYK1	1049 aa	Known RBP	12.01	□□□□□ -0.49
SPIDR-225	ENST00000524141	EID1	Q9Y6B2	187 aa		12.01	□□□□□ -0.49
SPIDR-225	ENST00000524141	PFKFB2	O60825	505 aa		12	□□□□□ -0.49
SPIDR-225	ENST00000524141	ADD1	P35611	737 aa	Known RBP	12	□□□□□ -0.49
SPIDR-225	ENST00000524141	FGD1	P98174	961 aa		12	□□□□□ -0.49
SPIDR-225	ENST00000524141	SNW1	Q13573	536 aa	Known RBP	12	□□□□□ -0.49
SPIDR-225	ENST00000524141	ARID5B	Q14865	1188 aa		12	□□□□□ -0.49
SPIDR-225	ENST00000524141	ELF2	Q15723	593 aa		12	□□□□□ -0.49
SPIDR-225	ENST00000524141	KCNQ3	O43525	872 aa		12	□□□□□ -0.49
SPIDR-225	ENST00000524141	IP6K1	Q92551	441 aa		12	□□□□□ -0.49
SPIDR-225	ENST00000524141	DDX11	Q96FC9	970 aa		12	□□□□□ -0.49
SPIDR-225	ENST00000524141	SLC26A8	Q96RN1	970 aa		12	□□□□□ -0.49
SPIDR-225	ENST00000524141	L2HGDH	Q9H9P8	463 aa		12	□□□□□ -0.49
SPIDR-225	ENST00000524141	ATP5J	P18859	108 aa		11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	SCRN1	Q12765	414 aa		11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	ZRSR1	Q15695	479 aa	Known RBP	11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	ENGASE	Q8NFI3	743 aa		11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	KAZALD1	Q96I82	304 aa		11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	TRMT1	Q9NXH9	659 aa	Known RBP	11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	PSD	A5PKW4	1024 aa	Predicted RBP	11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	CEBPZ	Q03701	1054 aa	Known RBP	11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	BMS1	Q14692	1282 aa	Known RBP	11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	AOPEP	Q8N6M6	819 aa		11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	GOLPH3L	Q9H4A5	285 aa		11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	TBX22	Q9Y458	520 aa		11.99	□□□□□ -0.49
SPIDR-225	ENST00000524141	HEG1	Q9ULI3	1381 aa		11.98	□□□□□ -0.49
SPIDR-225	ENST00000524141	AMOT	Q4VCS5	1084 aa		11.98	□□□□□ -0.49
SPIDR-225	ENST00000524141	NSUN7	Q8NE18	718 aa	Known RBP	11.98	□□□□□ -0.49
SPIDR-225	ENST00000524141	BPIFA3	Q9BQP9	254 aa		11.98	□□□□□ -0.49
SPIDR-225	ENST00000524141	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	11.98	□□□□□ -0.49
SPIDR-225	ENST00000524141	CCP110	O43303	1012 aa		11.98	□□□□□ -0.49
SPIDR-225	ENST00000524141	ME1	P48163	572 aa		11.98	□□□□□ -0.49
SPIDR-225	ENST00000524141	TPM4	P67936	248 aa		11.98	□□□□□ -0.49
SPIDR-225	ENST00000524141	FSIP1	Q8NA03	581 aa		11.98	□□□□□ -0.49
SPIDR-225	ENST00000524141	SIL1	Q9H173	461 aa		11.98	□□□□□ -0.49
SPIDR-225	ENST00000524141	PROSER3	Q2NL68	480 aa		11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	MCMDC2	Q4G0Z9	681 aa		11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	MRPS27	Q92552	414 aa	Known RBP	11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	USP28	Q96RU2	1077 aa		11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141		V9GYY5	206 aa	Predicted RBP	11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	PTPDC1	A2A3K4	754 aa		11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	CYP21A2	P08686	494 aa		11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	H2AFX	P16104	143 aa	Predicted RBP	11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	SFPQ	P23246	707 aa	Known RBP eCLIP	11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	C1orf141	Q5JVX7	400 aa		11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	NBPF6	Q5VWK0	638 aa		11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	DHX32	Q7L7V1	743 aa	Known RBP	11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	NBPF4	Q96M43	638 aa		11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	COL15A1	P39059	1388 aa		11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141	LAMA4	Q16363	1823 aa		11.97	□□□□□ -0.49
SPIDR-225	ENST00000524141		A0A1W2PQ27	194 aa		11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141		A0A1W2PQ64	194 aa		11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141		A0A1W2PQD8	194 aa		11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141	NEXN	Q0ZGT2	675 aa		11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141	SDF4	Q9BRK5	362 aa		11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141	CALCOCO1	Q9P1Z2	691 aa		11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141	ERBB3	P21860	1342 aa		11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141	ZNF609	O15014	1411 aa		11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141	PHRF1	Q9P1Y6	1649 aa	Known RBP	11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141		A0A0U1RQG5	324 aa	Predicted RBP	11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141	RNMT	O43148	476 aa	Known RBP	11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141	ADAL	Q6DHV7	355 aa		11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141	MPRIP	Q6WCQ1	1025 aa		11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141	NBPF11	Q86T75	865 aa		11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141	TICAM2	Q86XR7	235 aa		11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141	PPP1R13B	Q96KQ4	1090 aa		11.96	□□□□□ -0.49
SPIDR-225	ENST00000524141	E4F1	Q66K89	784 aa	Predicted RBP	11.96	□□□□□ -0.5
SPIDR-225	ENST00000524141	FMR1NB	Q8N0W7	255 aa	Predicted RBP	11.96	□□□□□ -0.5
SPIDR-225	ENST00000524141	AGXT2	Q9BYV1	514 aa		11.96	□□□□□ -0.5
SPIDR-225	ENST00000524141	COPRS	Q9NQ92	184 aa		11.96	□□□□□ -0.5
SPIDR-225	ENST00000524141	ARGLU1	Q9NWB6	273 aa	Predicted RBP	11.96	□□□□□ -0.5
SPIDR-225	ENST00000524141	SH3TC1	Q8TE82	1336 aa		11.96	□□□□□ -0.5
SPIDR-225	ENST00000524141	NFAT5	O94916	1531 aa		11.95	□□□□□ -0.5
SPIDR-225	ENST00000524141	ABCC6	O95255	1503 aa		11.95	□□□□□ -0.5
SPIDR-225	ENST00000524141	TIGD1	Q96MW7	591 aa		11.95	□□□□□ -0.5
SPIDR-225	ENST00000524141	FTO	Q9C0B1	505 aa	Known RBP eCLIP	11.95	□□□□□ -0.5
SPIDR-225	ENST00000524141	SALL1	Q9NSC2	1324 aa		11.95	□□□□□ -0.5
SPIDR-225	ENST00000524141	CCDC93	Q567U6	631 aa		11.95	□□□□□ -0.5
SPIDR-225	ENST00000524141	TNNI3K	Q59H18	835 aa		11.95	□□□□□ -0.5
SPIDR-225	ENST00000524141	RTEL1	Q9NZ71	1219 aa		11.95	□□□□□ -0.5
SPIDR-225	ENST00000524141	KIAA1468	Q9P260	1216 aa		11.95	□□□□□ -0.5
SPIDR-225	ENST00000524141	DBNL	Q9UJU6	430 aa	Known RBP	11.95	□□□□□ -0.5
SPIDR-225	ENST00000524141	FPGT-TNNI3K	V9GXZ4	949 aa		11.95	□□□□□ -0.5
SPIDR-225	ENST00000524141	SMC2	O95347	1197 aa		11.94	□□□□□ -0.5
SPIDR-225	ENST00000524141	CTDNEP1	O95476	244 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms