RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 SART1O43290 800 aaKnown RBP1.91□□□□□ -2.1
RNU6-539P-201ENST00000516665 GLI1P08151 1106 aa1.91□□□□□ -2.1
RNU6-539P-201ENST00000516665 CLCN1P35523 988 aa1.91□□□□□ -2.1
RNU6-539P-201ENST00000516665 ACVRL1P37023 503 aa1.91□□□□□ -2.1
RNU6-539P-201ENST00000516665 ELMSAN1Q6PJG2 1045 aa1.91□□□□□ -2.1
RNU6-539P-201ENST00000516665 GALNT11Q8NCW6 608 aa1.91□□□□□ -2.1
RNU6-539P-201ENST00000516665 ADAM19Q9H013 955 aa1.91□□□□□ -2.1
RNU6-539P-201ENST00000516665 ZDHHC3Q9NYG2 299 aa1.91□□□□□ -2.1
RNU6-539P-201ENST00000516665 C11orf21Q9P2W6 132 aa1.91□□□□□ -2.1
RNU6-539P-201ENST00000516665 TACR2P21452 398 aa1.9□□□□□ -2.11
RNU6-539P-201ENST00000516665 SWI5Q1ZZU3 235 aa1.9□□□□□ -2.11
RNU6-539P-201ENST00000516665 ZNF295-AS1Q8N0V1 137 aa1.9□□□□□ -2.11
RNU6-539P-201ENST00000516665 BRD7Q9NPI1 651 aa1.9□□□□□ -2.11
RNU6-539P-201ENST00000516665 PALD1Q9ULE6 856 aa1.9□□□□□ -2.11
RNU6-539P-201ENST00000516665 HIF3AQ9Y2N7 669 aa1.9□□□□□ -2.11
RNU6-539P-201ENST00000516665 PCDHB11Q9Y5F2 797 aa1.9□□□□□ -2.11
RNU6-539P-201ENST00000516665 SEMA3EO15041 775 aa1.89□□□□□ -2.11
RNU6-539P-201ENST00000516665 SASH1O94885 1247 aa1.89□□□□□ -2.11
RNU6-539P-201ENST00000516665 ITGB6P18564 788 aa1.89□□□□□ -2.11
RNU6-539P-201ENST00000516665 KRTAP10-11P60412 298 aa1.89□□□□□ -2.11
RNU6-539P-201ENST00000516665 QPCTQ16769 361 aa1.89□□□□□ -2.11
RNU6-539P-201ENST00000516665 CDCP2Q5VXM1 449 aa1.89□□□□□ -2.11
RNU6-539P-201ENST00000516665 HELBQ8NG08 1087 aaPredicted RBP1.89□□□□□ -2.11
RNU6-539P-201ENST00000516665 ESF1Q9H501 851 aaKnown RBP1.89□□□□□ -2.11
RNU6-539P-201ENST00000516665 ETNK1Q9HBU6 452 aa1.89□□□□□ -2.11
RNU6-539P-201ENST00000516665 SRA1Q9HD15 236 aaKnown RBP1.89□□□□□ -2.11
RNU6-539P-201ENST00000516665 PRDM7Q9NQW5 492 aa1.89□□□□□ -2.11
RNU6-539P-201ENST00000516665 RXRBP28702 533 aa1.88□□□□□ -2.11
RNU6-539P-201ENST00000516665 TXLNAP40222 546 aa1.88□□□□□ -2.11
RNU6-539P-201ENST00000516665 NR6A1Q15406 480 aa1.88□□□□□ -2.11
RNU6-539P-201ENST00000516665 ESCO1Q5FWF5 840 aa1.88□□□□□ -2.11
RNU6-539P-201ENST00000516665 TCERG1LQ5VWI1 586 aa1.88□□□□□ -2.11
RNU6-539P-201ENST00000516665 ZAR1Q86SH2 424 aa1.88□□□□□ -2.11
RNU6-539P-201ENST00000516665 TTC9Q92623 222 aa1.88□□□□□ -2.11
RNU6-539P-201ENST00000516665 TEPSINQ96N21 525 aa1.88□□□□□ -2.11
RNU6-539P-201ENST00000516665 TBC1D32Q96NH3 1257 aa1.88□□□□□ -2.11
RNU6-539P-201ENST00000516665 SMG9Q9H0W8 520 aaKnown RBP1.88□□□□□ -2.11
RNU6-539P-201ENST00000516665 PCED1AQ9H1Q7 454 aa1.88□□□□□ -2.11
RNU6-539P-201ENST00000516665 SEMA3GQ9NS98 782 aa1.88□□□□□ -2.11
RNU6-539P-201ENST00000516665 IL12RB1P42701 662 aa1.87□□□□□ -2.11
RNU6-539P-201ENST00000516665 KCNQ4P56696 695 aa1.87□□□□□ -2.11
RNU6-539P-201ENST00000516665 MLLT1Q03111 559 aaPredicted RBP1.87□□□□□ -2.11
RNU6-539P-201ENST00000516665 SMN1Q16637 294 aaKnown RBP1.87□□□□□ -2.11
RNU6-539P-201ENST00000516665 MAP4K3Q8IVH8 894 aa1.87□□□□□ -2.11
RNU6-539P-201ENST00000516665 DCAF11Q8TEB1 546 aa1.87□□□□□ -2.11
RNU6-539P-201ENST00000516665 TBC1D2Q9BYX2 928 aa1.87□□□□□ -2.11
RNU6-539P-201ENST00000516665 KCNH4Q9UQ05 1017 aa1.87□□□□□ -2.11
RNU6-539P-201ENST00000516665 PARP3Q9Y6F1 533 aa1.87□□□□□ -2.11
RNU6-539P-201ENST00000516665 NUTM2BA6NNL0 878 aaPredicted RBP1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 NUTM2EB1AL46 878 aaPredicted RBP1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 GAS2O43903 313 aaKnown RBP1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 SSTR3P32745 418 aaPredicted RBP1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 ADAM17P78536 824 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 MAP2K5Q13163 448 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 SEMA3FQ13275 785 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 NFKBIBQ15653 356 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 ZNF827Q17R98 1081 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 NUTM2DQ5VT03 806 aaPredicted RBP1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 ZNF765Q7L2R6 523 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 NUTM2AQ8IVF1 878 aaPredicted RBP1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 IL22RA1Q8N6P7 574 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 UBASH3BQ8TF42 649 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 LRRN4Q8WUT4 740 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 GATA6Q92908 595 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 KCNN1Q92952 543 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 EPB41L4BQ9H329 900 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 DCP1AQ9NPI6 582 aaPredicted RBP1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 CTNND2Q9UQB3 1225 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 USP3Q9Y6I4 520 aa1.86□□□□□ -2.11
RNU6-539P-201ENST00000516665 SERINC4A6NH21 518 aa1.85□□□□□ -2.11
RNU6-539P-201ENST00000516665 ERBB2P04626 1255 aa1.85□□□□□ -2.11
RNU6-539P-201ENST00000516665 CD68P34810 354 aaPredicted RBP1.85□□□□□ -2.11
RNU6-539P-201ENST00000516665 TMEM259Q4ZIN3 620 aa1.85□□□□□ -2.11
RNU6-539P-201ENST00000516665 ANKRD34AQ69YU3 496 aa1.85□□□□□ -2.11
RNU6-539P-201ENST00000516665 SYT8Q8NBV8 401 aa1.85□□□□□ -2.11
RNU6-539P-201ENST00000516665 KCNV2Q8TDN2 545 aa1.85□□□□□ -2.11
RNU6-539P-201ENST00000516665 MISP3Q96FF7 219 aa1.85□□□□□ -2.11
RNU6-539P-201ENST00000516665 CEP63Q96MT8 703 aa1.85□□□□□ -2.11
RNU6-539P-201ENST00000516665 PRKAG2Q9UGJ0 569 aa1.85□□□□□ -2.11
RNU6-539P-201ENST00000516665 ING1Q9UK53 422 aaPredicted RBP1.85□□□□□ -2.11
RNU6-539P-201ENST00000516665 FAM95CA0A1B0GW59 222 aa1.84□□□□□ -2.11
RNU6-539P-201ENST00000516665 TM4SF5O14894 197 aa1.84□□□□□ -2.11
RNU6-539P-201ENST00000516665 IRF6O14896 467 aa1.84□□□□□ -2.11
RNU6-539P-201ENST00000516665 NFKB1P19838 968 aa1.84□□□□□ -2.11
RNU6-539P-201ENST00000516665 MAGEA10P43363 369 aaPredicted RBP1.84□□□□□ -2.11
RNU6-539P-201ENST00000516665 CTDSPL2Q05D32 466 aa1.84□□□□□ -2.11
RNU6-539P-201ENST00000516665 KLF10Q13118 480 aa1.84□□□□□ -2.11
RNU6-539P-201ENST00000516665 DUOXA2Q1HG44 320 aa1.84□□□□□ -2.11
RNU6-539P-201ENST00000516665 BAHD1Q8TBE0 780 aaPredicted RBP1.84□□□□□ -2.11
RNU6-539P-201ENST00000516665 CYSRT1A8MQ03 144 aa1.83□□□□□ -2.12
RNU6-539P-201ENST00000516665 K7ESM1 405 aa1.83□□□□□ -2.12
RNU6-539P-201ENST00000516665 DDX3YO15523 660 aaKnown RBP1.83□□□□□ -2.12
RNU6-539P-201ENST00000516665 PRICKLE3O43900 615 aaPredicted RBP1.83□□□□□ -2.12
RNU6-539P-201ENST00000516665 KRTAP5-8O75690 187 aa1.83□□□□□ -2.12
RNU6-539P-201ENST00000516665 TYRO3Q06418 890 aa1.83□□□□□ -2.12
RNU6-539P-201ENST00000516665 RTP5Q14D33 572 aa1.83□□□□□ -2.12
RNU6-539P-201ENST00000516665 EML3Q32P44 896 aa1.83□□□□□ -2.12
RNU6-539P-201ENST00000516665 TMEM67Q5HYA8 995 aa1.83□□□□□ -2.12
RNU6-539P-201ENST00000516665 RTL5Q5HYW3 569 aaPredicted RBP1.83□□□□□ -2.12
RNU6-539P-201ENST00000516665 DUSP27Q5VZP5 1158 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms