RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 POLLQ9UGP5 575 aa14.71□□□□□ -0.05
LIMCH1-221ENST00000515785 DUOX1Q9NRD9 1551 aa14.71□□□□□ -0.05
LIMCH1-221ENST00000515785 GPR25O00155 361 aa14.7□□□□□ -0.06
LIMCH1-221ENST00000515785 GPSM2P81274 684 aa14.7□□□□□ -0.06
LIMCH1-221ENST00000515785 SCARF1Q14162 830 aa14.7□□□□□ -0.06
LIMCH1-221ENST00000515785 PROSER3Q2NL68 480 aa14.7□□□□□ -0.06
LIMCH1-221ENST00000515785 FBXO46Q6PJ61 603 aaPredicted RBP14.7□□□□□ -0.06
LIMCH1-221ENST00000515785 NLRP10Q86W26 655 aa14.7□□□□□ -0.06
LIMCH1-221ENST00000515785 RTL9Q8NET4 1388 aa14.7□□□□□ -0.06
LIMCH1-221ENST00000515785 DLG5Q8TDM6 1919 aa14.69□□□□□ -0.06
LIMCH1-221ENST00000515785 G3V3G9 751 aa14.69□□□□□ -0.06
LIMCH1-221ENST00000515785 TRIM26Q12899 539 aaPredicted RBP14.69□□□□□ -0.06
LIMCH1-221ENST00000515785 DCAF8Q5TAQ9 597 aa14.69□□□□□ -0.06
LIMCH1-221ENST00000515785 PRAMEF18Q5VWM3 479 aa14.69□□□□□ -0.06
LIMCH1-221ENST00000515785 NECTIN2Q92692 538 aa14.69□□□□□ -0.06
LIMCH1-221ENST00000515785 TTLL12Q14166 644 aaPredicted RBP14.68□□□□□ -0.06
LIMCH1-221ENST00000515785 PDIA6Q15084 440 aa14.68□□□□□ -0.06
LIMCH1-221ENST00000515785 TMC4Q7Z404 712 aa14.68□□□□□ -0.06
LIMCH1-221ENST00000515785 CELF1Q92879 486 aaKnown RBP14.68□□□□□ -0.06
LIMCH1-221ENST00000515785 R3HDMLQ9H3Y0 253 aa14.68□□□□□ -0.06
LIMCH1-221ENST00000515785 VIL1P09327 827 aaKnown RBP14.67□□□□□ -0.06
LIMCH1-221ENST00000515785 COPS6Q7L5N1 327 aa14.67□□□□□ -0.06
LIMCH1-221ENST00000515785 LRP10Q7Z4F1 713 aa14.67□□□□□ -0.06
LIMCH1-221ENST00000515785 EYA3Q99504 573 aa14.67□□□□□ -0.06
LIMCH1-221ENST00000515785 SH3TC1Q8TE82 1336 aa14.66□□□□□ -0.06
LIMCH1-221ENST00000515785 POTEFA5A3E0 1075 aa14.66□□□□□ -0.06
LIMCH1-221ENST00000515785 FKTNO75072 461 aa14.66□□□□□ -0.06
LIMCH1-221ENST00000515785 TCIRG1Q13488 830 aa14.66□□□□□ -0.06
LIMCH1-221ENST00000515785 HSP90AB3PQ58FF7 597 aa14.66□□□□□ -0.06
LIMCH1-221ENST00000515785 XAGE3Q8WTP9 111 aa14.66□□□□□ -0.06
LIMCH1-221ENST00000515785 ZC3H12CQ9C0D7 883 aaKnown RBP14.66□□□□□ -0.06
LIMCH1-221ENST00000515785 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.66□□□□□ -0.06
LIMCH1-221ENST00000515785 ERBB4Q15303 1308 aa14.66□□□□□ -0.06
LIMCH1-221ENST00000515785 SCN9AQ15858 1988 aa14.65□□□□□ -0.06
LIMCH1-221ENST00000515785 NEFMP07197 916 aa14.65□□□□□ -0.06
LIMCH1-221ENST00000515785 PPP2R1AP30153 589 aa14.65□□□□□ -0.06
LIMCH1-221ENST00000515785 TM4SF4P48230 202 aa14.65□□□□□ -0.06
LIMCH1-221ENST00000515785 FKBP1BP68106 108 aa14.65□□□□□ -0.06
LIMCH1-221ENST00000515785 TBC1D16Q8TBP0 767 aa14.65□□□□□ -0.06
LIMCH1-221ENST00000515785 CLSPNQ9HAW4 1339 aa14.65□□□□□ -0.06
LIMCH1-221ENST00000515785 LRRC37AA6NMS7 1700 aa14.64□□□□□ -0.07
LIMCH1-221ENST00000515785 PRKG1Q13976 671 aa14.64□□□□□ -0.07
LIMCH1-221ENST00000515785 RTL5Q5HYW3 569 aaPredicted RBP14.64□□□□□ -0.07
LIMCH1-221ENST00000515785 FAM89AQ96GI7 184 aa14.64□□□□□ -0.07
LIMCH1-221ENST00000515785 PAPPA2Q9BXP8 1791 aa14.63□□□□□ -0.07
LIMCH1-221ENST00000515785 COL4A1P02462 1669 aa14.63□□□□□ -0.07
LIMCH1-221ENST00000515785 FXR1P51114 621 aaKnown RBP eCLIP14.63□□□□□ -0.07
LIMCH1-221ENST00000515785 ZNF280AP59817 542 aaPredicted RBP14.63□□□□□ -0.07
LIMCH1-221ENST00000515785 RSBN1LQ6PCB5 846 aaPredicted RBP14.63□□□□□ -0.07
LIMCH1-221ENST00000515785 TSPYL4Q9UJ04 414 aa14.63□□□□□ -0.07
LIMCH1-221ENST00000515785 DDX60Q8IY21 1712 aaKnown RBP14.62□□□□□ -0.07
LIMCH1-221ENST00000515785 MYOZ2Q9NPC6 264 aa14.62□□□□□ -0.07
LIMCH1-221ENST00000515785 TRIM17Q9Y577 477 aa14.62□□□□□ -0.07
LIMCH1-221ENST00000515785 ATP5J2-PTCD1G3V325 749 aa14.61□□□□□ -0.07
LIMCH1-221ENST00000515785 UFL1O94874 794 aa14.61□□□□□ -0.07
LIMCH1-221ENST00000515785 USP17L8P0C7I0 530 aa14.61□□□□□ -0.07
LIMCH1-221ENST00000515785 EN2P19622 333 aaPredicted RBP14.61□□□□□ -0.07
LIMCH1-221ENST00000515785 RPS8P62241 208 aaKnown RBP14.61□□□□□ -0.07
LIMCH1-221ENST00000515785 NFE2L2Q16236 605 aa14.61□□□□□ -0.07
LIMCH1-221ENST00000515785 SP7Q8TDD2 431 aaPredicted RBP14.61□□□□□ -0.07
LIMCH1-221ENST00000515785 ANKIB1Q9P2G1 1089 aa14.61□□□□□ -0.07
LIMCH1-221ENST00000515785 PTPN12Q05209 780 aaKnown RBP14.6□□□□□ -0.07
LIMCH1-221ENST00000515785 SREBF2Q12772 1141 aa14.6□□□□□ -0.07
LIMCH1-221ENST00000515785 SF3B3Q15393 1217 aaKnown RBP14.6□□□□□ -0.07
LIMCH1-221ENST00000515785 NBPF9Q3BBW0 867 aa14.6□□□□□ -0.07
LIMCH1-221ENST00000515785 NOM1Q5C9Z4 860 aaKnown RBP14.6□□□□□ -0.07
LIMCH1-221ENST00000515785 AGBL3Q8NEM8 1001 aa14.6□□□□□ -0.07
LIMCH1-221ENST00000515785 CHRDL2Q6WN34 429 aa14.59□□□□□ -0.07
LIMCH1-221ENST00000515785 SEC31BQ9NQW1 1179 aa14.59□□□□□ -0.07
LIMCH1-221ENST00000515785 GGA1Q9UJY5 639 aa14.59□□□□□ -0.07
LIMCH1-221ENST00000515785 COLQQ9Y215 455 aaPredicted RBP14.59□□□□□ -0.07
LIMCH1-221ENST00000515785 INTS3Q68E01 1043 aaKnown RBP14.58□□□□□ -0.08
LIMCH1-221ENST00000515785 OTOP1Q7RTM1 612 aa14.58□□□□□ -0.08
LIMCH1-221ENST00000515785 PLEKHF1Q96S99 279 aa14.58□□□□□ -0.08
LIMCH1-221ENST00000515785 GMLQ99445 158 aa14.58□□□□□ -0.08
LIMCH1-221ENST00000515785 MXD3Q9BW11 206 aa14.58□□□□□ -0.08
LIMCH1-221ENST00000515785 PITPNM2Q9BZ72 1349 aa14.58□□□□□ -0.08
LIMCH1-221ENST00000515785 IRS4O14654 1257 aaPredicted RBP14.57□□□□□ -0.08
LIMCH1-221ENST00000515785 NF2P35240 595 aa14.57□□□□□ -0.08
LIMCH1-221ENST00000515785 FZD1Q9UP38 647 aa14.57□□□□□ -0.08
LIMCH1-221ENST00000515785 USP17L3A6NCW0 530 aa14.56□□□□□ -0.08
LIMCH1-221ENST00000515785 USP17L4A6NCW7 530 aa14.56□□□□□ -0.08
LIMCH1-221ENST00000515785 KRT24Q2M2I5 525 aa14.56□□□□□ -0.08
LIMCH1-221ENST00000515785 SPRYD7Q5W111 196 aa14.56□□□□□ -0.08
LIMCH1-221ENST00000515785 USP17L1Q7RTZ2 530 aa14.56□□□□□ -0.08
LIMCH1-221ENST00000515785 ARMC9Q7Z3E5 817 aa14.56□□□□□ -0.08
LIMCH1-221ENST00000515785 FBXW7Q969H0 707 aa14.56□□□□□ -0.08
LIMCH1-221ENST00000515785 CCDC85AQ96PX6 553 aaPredicted RBP14.56□□□□□ -0.08
LIMCH1-221ENST00000515785 ISCA1Q9BUE6 129 aa14.56□□□□□ -0.08
LIMCH1-221ENST00000515785 PODXL2Q9NZ53 605 aa14.56□□□□□ -0.08
LIMCH1-221ENST00000515785 WTIPA6NIX2 430 aaPredicted RBP14.55□□□□□ -0.08
LIMCH1-221ENST00000515785 ANKRD13DQ6ZTN6 518 aa14.55□□□□□ -0.08
LIMCH1-221ENST00000515785 PLBD2Q8NHP8 589 aa14.55□□□□□ -0.08
LIMCH1-221ENST00000515785 CCER1Q8TC90 406 aaPredicted RBP14.55□□□□□ -0.08
LIMCH1-221ENST00000515785 CD99L2Q8TCZ2 262 aa14.55□□□□□ -0.08
LIMCH1-221ENST00000515785 CFHR5Q9BXR6 569 aa14.55□□□□□ -0.08
LIMCH1-221ENST00000515785 CHPF2Q9P2E5 772 aa14.55□□□□□ -0.08
LIMCH1-221ENST00000515785 ANGEL1Q9UNK9 670 aaKnown RBP14.55□□□□□ -0.08
LIMCH1-221ENST00000515785 MAPK8IP3Q9UPT6 1336 aa14.55□□□□□ -0.08
LIMCH1-221ENST00000515785 KIAA0100Q14667 2235 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms