RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, humanhuman

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIO-222ENST00000515144 FNBP4Q8N3X1 1017 aaPredicted RBP16.59■□□□□ 0.25
TRIO-222ENST00000515144 NUP88Q99567 741 aaPredicted RBP16.58■□□□□ 0.25
TRIO-222ENST00000515144 GPCPD1Q9NPB8 672 aa16.58■□□□□ 0.25
TRIO-222ENST00000515144 CCDC178Q5BJE1 867 aa16.58■□□□□ 0.25
TRIO-222ENST00000515144 MAP7D2Q96T17 732 aa16.58■□□□□ 0.25
TRIO-222ENST00000515144 UBA7P41226 1012 aa16.58■□□□□ 0.24
TRIO-222ENST00000515144 TNNI2P48788 182 aa16.58■□□□□ 0.24
TRIO-222ENST00000515144 RTN1Q16799 776 aa16.58■□□□□ 0.24
TRIO-222ENST00000515144 DPP8Q6V1X1 898 aaPredicted RBP16.58■□□□□ 0.24
TRIO-222ENST00000515144 PHACTR3Q96KR7 559 aa16.58■□□□□ 0.24
TRIO-222ENST00000515144 SMTNL1A8MU46 457 aa16.58■□□□□ 0.24
TRIO-222ENST00000515144 MTIF2P46199 727 aaKnown RBP16.58■□□□□ 0.24
TRIO-222ENST00000515144 KCNQ4P56696 695 aa16.58■□□□□ 0.24
TRIO-222ENST00000515144 LGR6Q9HBX8 967 aa16.58■□□□□ 0.24
TRIO-222ENST00000515144 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.58■□□□□ 0.24
TRIO-222ENST00000515144 FSIP1Q8NA03 581 aa16.58■□□□□ 0.24
TRIO-222ENST00000515144 BAG6P46379 1132 aa16.57■□□□□ 0.24
TRIO-222ENST00000515144 EYA3Q99504 573 aa16.57■□□□□ 0.24
TRIO-222ENST00000515144 MAP3K19Q56UN5 1328 aa16.57■□□□□ 0.24
TRIO-222ENST00000515144 ZBTB43O43298 467 aa16.57■□□□□ 0.24
TRIO-222ENST00000515144 TSPYL6Q8N831 410 aa16.57■□□□□ 0.24
TRIO-222ENST00000515144 SPDYE3A6NKU9 549 aa16.57■□□□□ 0.24
TRIO-222ENST00000515144 ESR2Q92731 530 aa16.57■□□□□ 0.24
TRIO-222ENST00000515144 ITGA6P23229 1130 aa16.57■□□□□ 0.24
TRIO-222ENST00000515144 JAKMIP3Q5VZ66 844 aa16.57■□□□□ 0.24
TRIO-222ENST00000515144 LIMCH1Q9UPQ0 1083 aa16.57■□□□□ 0.24
TRIO-222ENST00000515144 CTNNA2P26232 953 aa16.56■□□□□ 0.24
TRIO-222ENST00000515144 GINS2Q9Y248 185 aa16.56■□□□□ 0.24
TRIO-222ENST00000515144 MRE11P49959 708 aa16.56■□□□□ 0.24
TRIO-222ENST00000515144 Q6ZUG5 572 aa16.56■□□□□ 0.24
TRIO-222ENST00000515144 TERF1P54274 439 aa16.56■□□□□ 0.24
TRIO-222ENST00000515144 TCHPQ9BT92 498 aa16.56■□□□□ 0.24
TRIO-222ENST00000515144 AATFQ9NY61 560 aaKnown RBP eCLIP16.56■□□□□ 0.24
TRIO-222ENST00000515144 CCDC40Q4G0X9 1142 aa16.56■□□□□ 0.24
TRIO-222ENST00000515144 KRT23Q9C075 422 aa16.56■□□□□ 0.24
TRIO-222ENST00000515144 MCMDC2Q4G0Z9 681 aa16.56■□□□□ 0.24
TRIO-222ENST00000515144 ZNF790Q6PG37 636 aa16.56■□□□□ 0.24
TRIO-222ENST00000515144 CCDC113Q9H0I3 377 aa16.56■□□□□ 0.24
TRIO-222ENST00000515144 SYNCQ9H7C4 482 aa16.56■□□□□ 0.24
TRIO-222ENST00000515144 CCP110O43303 1012 aa16.55■□□□□ 0.24
TRIO-222ENST00000515144 PHACTR2O75167 634 aa16.55■□□□□ 0.24
TRIO-222ENST00000515144 PLIN2Q99541 437 aa16.55■□□□□ 0.24
TRIO-222ENST00000515144 ZFYVE16Q7Z3T8 1539 aa16.55■□□□□ 0.24
TRIO-222ENST00000515144 SPA17Q15506 151 aa16.55■□□□□ 0.24
TRIO-222ENST00000515144 HOMER2Q9NSB8 354 aa16.55■□□□□ 0.24
TRIO-222ENST00000515144 IGHDP01880 384 aa16.55■□□□□ 0.24
TRIO-222ENST00000515144 TIMM10P62072 90 aa16.55■□□□□ 0.24
TRIO-222ENST00000515144 KLHDC4Q8TBB5 520 aa16.55■□□□□ 0.24
TRIO-222ENST00000515144 GGA1Q9UJY5 639 aa16.55■□□□□ 0.24
TRIO-222ENST00000515144 COMMD10Q9Y6G5 202 aa16.55■□□□□ 0.24
TRIO-222ENST00000515144 TAF4BQ92750 862 aa16.55■□□□□ 0.24
TRIO-222ENST00000515144 TMOD4Q9NZQ9 345 aa16.55■□□□□ 0.24
TRIO-222ENST00000515144 MYCP01106 439 aaPredicted RBP16.54■□□□□ 0.24
TRIO-222ENST00000515144 PRPF4BQ13523 1007 aaKnown RBP16.54■□□□□ 0.24
TRIO-222ENST00000515144 RGS22Q8NE09 1264 aa16.54■□□□□ 0.24
TRIO-222ENST00000515144 ALG1Q9BT22 464 aa16.54■□□□□ 0.24
TRIO-222ENST00000515144 TEX11Q8IYF3 940 aa16.54■□□□□ 0.24
TRIO-222ENST00000515144 CCDC87Q9NVE4 849 aa16.54■□□□□ 0.24
TRIO-222ENST00000515144 DNMT1P26358 1616 aaKnown RBP16.53■□□□□ 0.24
TRIO-222ENST00000515144 TBCAO75347 108 aaKnown RBP16.53■□□□□ 0.24
TRIO-222ENST00000515144 IL15P40933 162 aaPredicted RBP16.53■□□□□ 0.24
TRIO-222ENST00000515144 STAT6P42226 847 aa16.53■□□□□ 0.24
TRIO-222ENST00000515144 CCDC174Q6PII3 467 aa16.53■□□□□ 0.24
TRIO-222ENST00000515144 PTPRKQ15262 1439 aa16.53■□□□□ 0.24
TRIO-222ENST00000515144 SORBS3O60504 671 aa16.53■□□□□ 0.24
TRIO-222ENST00000515144 FGFR1OPO95684 399 aaKnown RBP16.53■□□□□ 0.24
TRIO-222ENST00000515144 MARCKSP29966 332 aaPredicted RBP16.53■□□□□ 0.24
TRIO-222ENST00000515144 PRAG1Q86YV5 1406 aa16.53■□□□□ 0.24
TRIO-222ENST00000515144 PPIP5K2O43314 1243 aa16.53■□□□□ 0.24
TRIO-222ENST00000515144 EP400NLQ6ZTU2 488 aa16.53■□□□□ 0.24
TRIO-222ENST00000515144 ANKRD2Q9GZV1 360 aa16.53■□□□□ 0.24
TRIO-222ENST00000515144 EXOC1Q9NV70 894 aa16.53■□□□□ 0.24
TRIO-222ENST00000515144 SDSP20132 328 aa16.52■□□□□ 0.24
TRIO-222ENST00000515144 MCM7P33993 719 aa16.52■□□□□ 0.24
TRIO-222ENST00000515144 USH1GQ495M9 461 aa16.52■□□□□ 0.24
TRIO-222ENST00000515144 TXLNBQ8N3L3 684 aa16.52■□□□□ 0.24
TRIO-222ENST00000515144 ERCC4Q92889 916 aaPredicted RBP16.52■□□□□ 0.24
TRIO-222ENST00000515144 BACH1O14867 736 aa16.52■□□□□ 0.24
TRIO-222ENST00000515144 ARHGAP29Q52LW3 1261 aa16.52■□□□□ 0.24
TRIO-222ENST00000515144 SH2B1Q9NRF2 756 aaPredicted RBP16.52■□□□□ 0.24
TRIO-222ENST00000515144 TNNQ9UQP3 1299 aa16.52■□□□□ 0.24
TRIO-222ENST00000515144 NOP2P46087 812 aaKnown RBP16.52■□□□□ 0.24
TRIO-222ENST00000515144 AMPD3Q01432 767 aa16.52■□□□□ 0.24
TRIO-222ENST00000515144 NMIQ13287 307 aaPredicted RBP16.52■□□□□ 0.23
TRIO-222ENST00000515144 RRP36Q96EU6 259 aaKnown RBP16.52■□□□□ 0.23
TRIO-222ENST00000515144 NOD1Q9Y239 953 aa16.52■□□□□ 0.23
TRIO-222ENST00000515144 RBM8AQ9Y5S9 174 aaKnown RBP16.52■□□□□ 0.23
TRIO-222ENST00000515144 NDUFB9Q9Y6M9 179 aa16.52■□□□□ 0.23
TRIO-222ENST00000515144 HMGN5P82970 282 aaKnown RBP16.52■□□□□ 0.23
TRIO-222ENST00000515144 BRF1Q92994 677 aa16.52■□□□□ 0.23
TRIO-222ENST00000515144 CSPG5O95196 566 aa16.51■□□□□ 0.23
TRIO-222ENST00000515144 DOK7Q18PE1 504 aa16.51■□□□□ 0.23
TRIO-222ENST00000515144 NIM1KQ8IY84 436 aa16.51■□□□□ 0.23
TRIO-222ENST00000515144 MAP3K1Q13233 1512 aa16.51■□□□□ 0.23
TRIO-222ENST00000515144 RBM10P98175 930 aaKnown RBP16.51■□□□□ 0.23
TRIO-222ENST00000515144 TTC22Q5TAA0 569 aa16.51■□□□□ 0.23
TRIO-222ENST00000515144 ZCCHC11Q5TAX3 1644 aaKnown RBP16.51■□□□□ 0.23
TRIO-222ENST00000515144 HARSP12081 509 aaKnown RBP16.51■□□□□ 0.23
TRIO-222ENST00000515144 DDX39AO00148 427 aaKnown RBP16.51■□□□□ 0.23
TRIO-222ENST00000515144 MAEAQ7L5Y9 396 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms