RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 SECISBP2LQ93073 1101 aaKnown RBP8.93□□□□□ -0.98
CLIP1-205ENST00000514271 CHAMP1Q96JM3 812 aa8.93□□□□□ -0.98
CLIP1-205ENST00000514271 SLC4A9Q96Q91 983 aa8.93□□□□□ -0.98
CLIP1-205ENST00000514271 NUP98P52948 1817 aa8.93□□□□□ -0.98
CLIP1-205ENST00000514271 GNPATO15228 680 aa8.93□□□□□ -0.98
CLIP1-205ENST00000514271 RFC4P35249 363 aa8.93□□□□□ -0.98
CLIP1-205ENST00000514271 SLC39A6Q13433 755 aa8.93□□□□□ -0.98
CLIP1-205ENST00000514271 NEUROD2Q15784 382 aa8.93□□□□□ -0.98
CLIP1-205ENST00000514271 SPON1Q9HCB6 807 aa8.93□□□□□ -0.98
CLIP1-205ENST00000514271 PALD1Q9ULE6 856 aa8.93□□□□□ -0.98
CLIP1-205ENST00000514271 PTCD1O75127 700 aaKnown RBP8.93□□□□□ -0.98
CLIP1-205ENST00000514271 ZPR1O75312 459 aa8.93□□□□□ -0.98
CLIP1-205ENST00000514271 PARP10Q53GL7 1025 aa8.93□□□□□ -0.98
CLIP1-205ENST00000514271 ITPRIPQ8IWB1 547 aa8.93□□□□□ -0.98
CLIP1-205ENST00000514271 C16orf71Q8IYS4 520 aaPredicted RBP8.93□□□□□ -0.98
CLIP1-205ENST00000514271 HSPA4P34932 840 aa8.92□□□□□ -0.98
CLIP1-205ENST00000514271 POLA2Q14181 598 aa8.92□□□□□ -0.98
CLIP1-205ENST00000514271 TWISTNBQ3B726 338 aaPredicted RBP8.92□□□□□ -0.98
CLIP1-205ENST00000514271 HDGFL1Q5TGJ6 251 aa8.92□□□□□ -0.98
CLIP1-205ENST00000514271 TMX3Q96JJ7 454 aa8.92□□□□□ -0.98
CLIP1-205ENST00000514271 PLCD4Q9BRC7 762 aa8.92□□□□□ -0.98
CLIP1-205ENST00000514271 ZNF827Q17R98 1081 aa8.92□□□□□ -0.98
CLIP1-205ENST00000514271 PTF1AQ7RTS3 328 aa8.92□□□□□ -0.98
CLIP1-205ENST00000514271 PLA2G4DQ86XP0 818 aa8.92□□□□□ -0.98
CLIP1-205ENST00000514271 BBXQ8WY36 941 aaPredicted RBP8.92□□□□□ -0.98
CLIP1-205ENST00000514271 HDAC5Q9UQL6 1122 aa8.92□□□□□ -0.98
CLIP1-205ENST00000514271 MORC2Q9Y6X9 1032 aaPredicted RBP8.92□□□□□ -0.98
CLIP1-205ENST00000514271 IPO4Q8TEX9 1081 aaKnown RBP8.92□□□□□ -0.98
CLIP1-205ENST00000514271 NYXQ9GZU5 481 aa8.92□□□□□ -0.98
CLIP1-205ENST00000514271 SLFN14P0C7P3 912 aa8.91□□□□□ -0.98
CLIP1-205ENST00000514271 PI4K2BQ8TCG2 481 aa8.91□□□□□ -0.98
CLIP1-205ENST00000514271 CTNNA3Q9UI47 895 aa8.91□□□□□ -0.98
CLIP1-205ENST00000514271 MAP3K15Q6ZN16 1313 aa8.91□□□□□ -0.98
CLIP1-205ENST00000514271 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.91□□□□□ -0.98
CLIP1-205ENST00000514271 MBD3O95983 291 aa8.91□□□□□ -0.98
CLIP1-205ENST00000514271 SPRYD3Q8NCJ5 442 aa8.91□□□□□ -0.98
CLIP1-205ENST00000514271 TMEM51Q9NW97 253 aa8.91□□□□□ -0.98
CLIP1-205ENST00000514271 CARMIL3Q8ND23 1372 aa8.91□□□□□ -0.98
CLIP1-205ENST00000514271 GADD45BO75293 160 aaPredicted RBP8.9□□□□□ -0.98
CLIP1-205ENST00000514271 TRIM28Q13263 835 aaKnown RBP8.9□□□□□ -0.98
CLIP1-205ENST00000514271 CAVIN1Q6NZI2 390 aaKnown RBP8.9□□□□□ -0.98
CLIP1-205ENST00000514271 FAM184AQ8NB25 1140 aa8.9□□□□□ -0.98
CLIP1-205ENST00000514271 ESYT1Q9BSJ8 1104 aa8.9□□□□□ -0.98
CLIP1-205ENST00000514271 ELP1O95163 1332 aa8.9□□□□□ -0.98
CLIP1-205ENST00000514271 PLBD2Q8NHP8 589 aa8.9□□□□□ -0.98
CLIP1-205ENST00000514271 PDE1AP54750 535 aa8.9□□□□□ -0.99
CLIP1-205ENST00000514271 NYAP1Q6ZVC0 841 aa8.9□□□□□ -0.99
CLIP1-205ENST00000514271 THUMPD2Q9BTF0 503 aaKnown RBP8.9□□□□□ -0.99
CLIP1-205ENST00000514271 BCL2L12Q9HB09 334 aa8.9□□□□□ -0.99
CLIP1-205ENST00000514271 ZBTB1Q9Y2K1 713 aa8.9□□□□□ -0.99
CLIP1-205ENST00000514271 CD2APQ9Y5K6 639 aa8.9□□□□□ -0.99
CLIP1-205ENST00000514271 FAM193AP78312 1265 aa8.89□□□□□ -0.99
CLIP1-205ENST00000514271 NCBP1Q09161 790 aaKnown RBP8.89□□□□□ -0.99
CLIP1-205ENST00000514271 COL23A1Q86Y22 540 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-205ENST00000514271 FTSJ3Q8IY81 847 aaKnown RBP8.89□□□□□ -0.99
CLIP1-205ENST00000514271 CHMP4BQ9H444 224 aaKnown RBP8.89□□□□□ -0.99
CLIP1-205ENST00000514271 U3KPZ7 1027 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-205ENST00000514271 C10orf71Q711Q0 1435 aa8.89□□□□□ -0.99
CLIP1-205ENST00000514271 TIAM2Q8IVF5 1701 aa8.89□□□□□ -0.99
CLIP1-205ENST00000514271 MCM2P49736 904 aa8.89□□□□□ -0.99
CLIP1-205ENST00000514271 FAM43BQ6ZT52 329 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-205ENST00000514271 DZIP3Q86Y13 1208 aaKnown RBP8.89□□□□□ -0.99
CLIP1-205ENST00000514271 ARHGEF1Q92888 912 aaKnown RBP8.89□□□□□ -0.99
CLIP1-205ENST00000514271 KCNG1Q9UIX4 513 aa8.89□□□□□ -0.99
CLIP1-205ENST00000514271 KCNQ3O43525 872 aa8.89□□□□□ -0.99
CLIP1-205ENST00000514271 CHMLP26374 656 aa8.89□□□□□ -0.99
CLIP1-205ENST00000514271 CDC25BP30305 580 aa8.89□□□□□ -0.99
CLIP1-205ENST00000514271 NOLC1Q14978 699 aaKnown RBP eCLIP8.89□□□□□ -0.99
CLIP1-205ENST00000514271 GRIPAP1Q4V328 841 aa8.89□□□□□ -0.99
CLIP1-205ENST00000514271 MCTP1Q6DN14 999 aa8.89□□□□□ -0.99
CLIP1-205ENST00000514271 LSG1Q9H089 658 aaKnown RBP8.89□□□□□ -0.99
CLIP1-205ENST00000514271 USP16Q9Y5T5 823 aa8.89□□□□□ -0.99
CLIP1-205ENST00000514271 PARP3Q9Y6F1 533 aa8.89□□□□□ -0.99
CLIP1-205ENST00000514271 DDX49Q9Y6V7 483 aaKnown RBP8.89□□□□□ -0.99
CLIP1-205ENST00000514271 CHD4Q14839 1912 aa8.88□□□□□ -0.99
CLIP1-205ENST00000514271 GTF2E1P29083 439 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-205ENST00000514271 R3HDM1Q15032 1099 aaKnown RBP8.88□□□□□ -0.99
CLIP1-205ENST00000514271 KRT24Q2M2I5 525 aa8.88□□□□□ -0.99
CLIP1-205ENST00000514271 CCDC93Q567U6 631 aa8.88□□□□□ -0.99
CLIP1-205ENST00000514271 GIGYF2Q6Y7W6 1299 aaKnown RBP8.88□□□□□ -0.99
CLIP1-205ENST00000514271 SYCE3A1L190 88 aa8.88□□□□□ -0.99
CLIP1-205ENST00000514271 KDM4AO75164 1064 aa8.88□□□□□ -0.99
CLIP1-205ENST00000514271 CAMTA2O94983 1202 aa8.88□□□□□ -0.99
CLIP1-205ENST00000514271 LETM1O95202 739 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-205ENST00000514271 PPP1R42Q7Z4L9 355 aa8.88□□□□□ -0.99
CLIP1-205ENST00000514271 DDX41Q9UJV9 622 aaKnown RBP8.88□□□□□ -0.99
CLIP1-205ENST00000514271 LRP10Q7Z4F1 713 aa8.88□□□□□ -0.99
CLIP1-205ENST00000514271 API5Q9BZZ5 524 aaKnown RBP8.88□□□□□ -0.99
CLIP1-205ENST00000514271 GYS1P13807 737 aa8.87□□□□□ -0.99
CLIP1-205ENST00000514271 TM4SF1P30408 202 aa8.87□□□□□ -0.99
CLIP1-205ENST00000514271 TGFB2P61812 414 aa8.87□□□□□ -0.99
CLIP1-205ENST00000514271 SLFNL1Q499Z3 407 aa8.87□□□□□ -0.99
CLIP1-205ENST00000514271 KIF1BPQ96EK5 621 aa8.87□□□□□ -0.99
CLIP1-205ENST00000514271 R3HCC1Q9Y3T6 440 aaKnown RBP8.87□□□□□ -0.99
CLIP1-205ENST00000514271 SMARCA5O60264 1052 aaPredicted RBP8.87□□□□□ -0.99
CLIP1-205ENST00000514271 MX1P20591 662 aa8.87□□□□□ -0.99
CLIP1-205ENST00000514271 NEXNQ0ZGT2 675 aa8.87□□□□□ -0.99
CLIP1-205ENST00000514271 PDIA6Q15084 440 aa8.87□□□□□ -0.99
CLIP1-205ENST00000514271 ANKRD45Q5TZF3 282 aa8.87□□□□□ -0.99
CLIP1-205ENST00000514271 SGIP1Q9BQI5 828 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms