RNA–Protein interactions for RNA: ENST00000513984.5

VCAN-211, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-211ENST00000513984 DDX46Q7L014 1031 aaKnown RBP18■□□□□ 0.47
VCAN-211ENST00000513984 VGLL2Q8N8G2 317 aa18■□□□□ 0.47
VCAN-211ENST00000513984 XAGE2Q96GT9 111 aa18■□□□□ 0.47
VCAN-211ENST00000513984 FOXD4L1Q9NU39 408 aa18■□□□□ 0.47
VCAN-211ENST00000513984 METTL24Q5JXM2 366 aa18■□□□□ 0.47
VCAN-211ENST00000513984 UPF3BQ9BZI7 483 aaKnown RBP18■□□□□ 0.47
VCAN-211ENST00000513984 CNNM1Q9NRU3 951 aa18■□□□□ 0.47
VCAN-211ENST00000513984 RBM8AQ9Y5S9 174 aaKnown RBP18■□□□□ 0.47
VCAN-211ENST00000513984 HCLS1P14317 486 aaPredicted RBP17.99■□□□□ 0.47
VCAN-211ENST00000513984 ATP2B3Q16720 1220 aa17.99■□□□□ 0.47
VCAN-211ENST00000513984 CCDC158Q5M9N0 1113 aa17.99■□□□□ 0.47
VCAN-211ENST00000513984 ZNF589Q86UQ0 364 aaPredicted RBP17.99■□□□□ 0.47
VCAN-211ENST00000513984 TMX3Q96JJ7 454 aa17.99■□□□□ 0.47
VCAN-211ENST00000513984 CWC22Q9HCG8 908 aaKnown RBP17.99■□□□□ 0.47
VCAN-211ENST00000513984 GOLIM4O00461 696 aa17.98■□□□□ 0.47
VCAN-211ENST00000513984 ADORA1P30542 326 aa17.98■□□□□ 0.47
VCAN-211ENST00000513984 KCNQ4P56696 695 aa17.98■□□□□ 0.47
VCAN-211ENST00000513984 FAM182BQ5T319 152 aa17.98■□□□□ 0.47
VCAN-211ENST00000513984 PRPF40BQ6NWY9 871 aaKnown RBP17.98■□□□□ 0.47
VCAN-211ENST00000513984 TTC14Q96N46 770 aa17.98■□□□□ 0.47
VCAN-211ENST00000513984 TM6SF1Q9BZW5 370 aa17.98■□□□□ 0.47
VCAN-211ENST00000513984 RPS6KA4O75676 772 aa17.98■□□□□ 0.47
VCAN-211ENST00000513984 CUL4AQ13619 759 aa17.98■□□□□ 0.47
VCAN-211ENST00000513984 MYO5AQ9Y4I1 1855 aaKnown RBP17.97■□□□□ 0.47
VCAN-211ENST00000513984 MROH5Q6ZUA9 1318 aa17.97■□□□□ 0.47
VCAN-211ENST00000513984 FAM177BA6PVY3 158 aa17.97■□□□□ 0.47
VCAN-211ENST00000513984 TAF5LO75529 589 aa17.97■□□□□ 0.47
VCAN-211ENST00000513984 TTC39AQ5SRH9 613 aa17.97■□□□□ 0.47
VCAN-211ENST00000513984 GORABQ5T7V8 394 aa17.97■□□□□ 0.47
VCAN-211ENST00000513984 CREB3L3Q68CJ9 461 aa17.97■□□□□ 0.47
VCAN-211ENST00000513984 SEPT12Q8IYM1 358 aa17.97■□□□□ 0.47
VCAN-211ENST00000513984 CCNL1Q9UK58 526 aaPredicted RBP17.97■□□□□ 0.47
VCAN-211ENST00000513984 PDE8BO95263 885 aa17.96■□□□□ 0.47
VCAN-211ENST00000513984 MCM4P33991 863 aa17.96■□□□□ 0.47
VCAN-211ENST00000513984 CCDC152Q4G0S7 254 aa17.96■□□□□ 0.47
VCAN-211ENST00000513984 MCMDC2Q4G0Z9 681 aa17.96■□□□□ 0.47
VCAN-211ENST00000513984 USPL1Q5W0Q7 1092 aa17.96■□□□□ 0.47
VCAN-211ENST00000513984 RPAP1Q9BWH6 1393 aaPredicted RBP17.96■□□□□ 0.47
VCAN-211ENST00000513984 ZKSCAN1P17029 563 aaPredicted RBP17.95■□□□□ 0.46
VCAN-211ENST00000513984 TNPO1Q92973 898 aaKnown RBP17.95■□□□□ 0.46
VCAN-211ENST00000513984 ZNF512BQ96KM6 892 aaPredicted RBP17.95■□□□□ 0.46
VCAN-211ENST00000513984 HELLSQ9NRZ9 838 aa17.95■□□□□ 0.46
VCAN-211ENST00000513984 NARFQ9UHQ1 456 aa17.95■□□□□ 0.46
VCAN-211ENST00000513984 LAMA4Q16363 1823 aa17.95■□□□□ 0.46
VCAN-211ENST00000513984 SLC27A2O14975 620 aa17.95■□□□□ 0.46
VCAN-211ENST00000513984 KCNJ4P48050 445 aa17.95■□□□□ 0.46
VCAN-211ENST00000513984 RNF20Q5VTR2 975 aa17.95■□□□□ 0.46
VCAN-211ENST00000513984 INTS4Q96HW7 963 aaKnown RBP17.95■□□□□ 0.46
VCAN-211ENST00000513984 BCL2L12Q9HB09 334 aa17.95■□□□□ 0.46
VCAN-211ENST00000513984 HMG20BQ9P0W2 317 aa17.95■□□□□ 0.46
VCAN-211ENST00000513984 DOCK2Q92608 1830 aa17.95■□□□□ 0.46
VCAN-211ENST00000513984 TAF1P21675 1872 aa17.94■□□□□ 0.46
VCAN-211ENST00000513984 UBR3Q6ZT12 1888 aa17.94■□□□□ 0.46
VCAN-211ENST00000513984 CASTP20810 708 aaKnown RBP17.94■□□□□ 0.46
VCAN-211ENST00000513984 ZMYM1Q5SVZ6 1142 aa17.94■□□□□ 0.46
VCAN-211ENST00000513984 ZGPATQ8N5A5 531 aaKnown RBP17.94■□□□□ 0.46
VCAN-211ENST00000513984 ZSWIM6Q9HCJ5 1215 aa17.94■□□□□ 0.46
VCAN-211ENST00000513984 CHGBP05060 677 aa17.93■□□□□ 0.46
VCAN-211ENST00000513984 FGFR2P21802 821 aa17.93■□□□□ 0.46
VCAN-211ENST00000513984 NUCB2P80303 420 aa17.93■□□□□ 0.46
VCAN-211ENST00000513984 PUM3Q15397 648 aaKnown RBP17.93■□□□□ 0.46
VCAN-211ENST00000513984 ADCK5Q3MIX3 580 aa17.93■□□□□ 0.46
VCAN-211ENST00000513984 TSGA10IPQ3SY00 556 aa17.93■□□□□ 0.46
VCAN-211ENST00000513984 JAKMIP1Q96N16 626 aaKnown RBP17.93■□□□□ 0.46
VCAN-211ENST00000513984 SEC62Q99442 399 aaKnown RBP17.93■□□□□ 0.46
VCAN-211ENST00000513984 COL4A1P02462 1669 aa17.93■□□□□ 0.46
VCAN-211ENST00000513984 GNPATO15228 680 aa17.93■□□□□ 0.46
VCAN-211ENST00000513984 CYP2E1P05181 493 aaPredicted RBP17.93■□□□□ 0.46
VCAN-211ENST00000513984 SSFA2P28290 1259 aa17.93■□□□□ 0.46
VCAN-211ENST00000513984 LRRFIP1Q32MZ4 808 aaKnown RBP17.93■□□□□ 0.46
VCAN-211ENST00000513984 BCL11BQ9C0K0 894 aaPredicted RBP17.93■□□□□ 0.46
VCAN-211ENST00000513984 QTRT2Q9H974 415 aaKnown RBP17.93■□□□□ 0.46
VCAN-211ENST00000513984 SEC31BQ9NQW1 1179 aa17.93■□□□□ 0.46
VCAN-211ENST00000513984 RNF113AO15541 343 aaKnown RBP17.92■□□□□ 0.46
VCAN-211ENST00000513984 SCARF1Q14162 830 aa17.92■□□□□ 0.46
VCAN-211ENST00000513984 VPS53Q5VIR6 699 aa17.92■□□□□ 0.46
VCAN-211ENST00000513984 CLEC17AQ6ZS10 378 aa17.92■□□□□ 0.46
VCAN-211ENST00000513984 LPIN2Q92539 896 aa17.92■□□□□ 0.46
VCAN-211ENST00000513984 MPHOSPH8Q99549 860 aa17.92■□□□□ 0.46
VCAN-211ENST00000513984 RTCBQ9Y3I0 505 aaKnown RBP17.92■□□□□ 0.46
VCAN-211ENST00000513984 CYP46A1Q9Y6A2 500 aa17.92■□□□□ 0.46
VCAN-211ENST00000513984 AK2P54819 239 aa17.91■□□□□ 0.46
VCAN-211ENST00000513984 FKBP4Q02790 459 aaKnown RBP eCLIP17.91■□□□□ 0.46
VCAN-211ENST00000513984 TBC1D9BQ66K14 1250 aa17.91■□□□□ 0.46
VCAN-211ENST00000513984 CCDC129Q6ZRS4 1044 aa17.91■□□□□ 0.46
VCAN-211ENST00000513984 RUFY3Q7L099 469 aa17.91■□□□□ 0.46
VCAN-211ENST00000513984 GBP4Q96PP9 640 aa17.91■□□□□ 0.46
VCAN-211ENST00000513984 U3KPZ7 1027 aaPredicted RBP17.91■□□□□ 0.46
VCAN-211ENST00000513984 DDX11L8A8MPP1 907 aa17.91■□□□□ 0.46
VCAN-211ENST00000513984 ZFYP08048 801 aaPredicted RBP17.91■□□□□ 0.46
VCAN-211ENST00000513984 PSMA5P28066 241 aa17.91■□□□□ 0.46
VCAN-211ENST00000513984 ARID4AP29374 1257 aaPredicted RBP17.91■□□□□ 0.46
VCAN-211ENST00000513984 IGHMBP2P38935 993 aaKnown RBP17.91■□□□□ 0.46
VCAN-211ENST00000513984 MCAMP43121 646 aa17.91■□□□□ 0.46
VCAN-211ENST00000513984 ZAP70P43403 619 aa17.91■□□□□ 0.46
VCAN-211ENST00000513984 SF3B3Q15393 1217 aaKnown RBP17.91■□□□□ 0.46
VCAN-211ENST00000513984 ERFEQ4G0M1 354 aa17.91■□□□□ 0.46
VCAN-211ENST00000513984 NOL8Q76FK4 1167 aaKnown RBP17.91■□□□□ 0.46
VCAN-211ENST00000513984 ZPR1O75312 459 aa17.9■□□□□ 0.46
VCAN-211ENST00000513984 SLC10A5Q5PT55 438 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms