RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 A6NNZ2 444 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 CTAGE5O15320 804 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 FERP16591 822 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 STMN1P16949 149 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 ZC3H6P61129 1189 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 CCDC57Q2TAC2 916 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 TUBB8Q3ZCM7 444 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 CCDC186Q7Z3E2 898 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 GTF3C6Q969F1 213 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 CCDC85AQ96PX6 553 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 SPINK5Q9NQ38 1064 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 SAMD15Q9P1V8 674 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 IDH1O75874 414 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 YEATS4O95619 227 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 RRS1Q15050 365 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 GPR162Q16538 588 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 CDCA7Q9BWT1 371 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 DNAI1Q9UI46 699 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 EHBP1Q8NDI1 1231 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 VEZTQ9HBM0 779 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 USH1CQ9Y6N9 552 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 ITSN2Q9NZM3 1697 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 GRIPAP1Q4V328 841 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 CACNA2D4Q7Z3S7 1137 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 GOLGA1Q92805 767 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 GBP5Q96PP8 586 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 STMN4Q9H169 189 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 A0A1W2PRG0 241 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 NDUFAB1O14561 156 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 FCHSD2O94868 740 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 GJB2P29033 226 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 MATR3P43243 847 aaKnown RBP eCLIP9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 GRM1Q13255 1194 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 VPS36Q86VN1 386 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 CNNM3Q8NE01 707 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 MKRN1Q9UHC7 482 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 UBE2HP62256 183 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 CCT2P78371 535 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 LRRC23Q53EV4 343 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 CCDC97Q96F63 343 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 CCDC141Q6ZP82 1450 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 TRIM27P14373 513 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 ANAPC15P60006 121 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 BICDL1Q6ZP65 573 aa9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 U3KPZ7 1027 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-218ENST00000513024 F6X3S4 739 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 CETN3O15182 167 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 SKILP12757 684 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 GBP1P32455 592 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 NFE2L2Q16236 605 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 WASF1Q92558 559 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 MRFAP1L1Q96HT8 127 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 PARP3Q9Y6F1 533 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 TNRQ92752 1358 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 U2AF2P26368 475 aaKnown RBP eCLIP9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 STX1AQ16623 288 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 BMP2KLQ5H9B9 411 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 ZSCAN25Q6NSZ9 544 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 KRT28Q7Z3Y7 464 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 CTCFLQ8NI51 663 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 PPP1R14CQ8TAE6 165 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 EFCC1Q9HA90 598 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 JADE2Q9NQC1 790 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 CEP131Q9UPN4 1083 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 SHANK2Q9UPX8 1470 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 TDRD12Q587J7 1177 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 LARP1Q6PKG0 1096 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 PIK3R5Q8WYR1 880 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 DDX12PQ92771 950 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 TRIM4Q9C037 500 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 FKBP15Q5T1M5 1219 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 CCDC129Q6ZRS4 1044 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 HDXQ7Z353 690 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 TRIM7Q9C029 511 aa9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 NUCKS1Q9H1E3 243 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-218ENST00000513024 PRIM1P49642 420 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 NEDD9Q14511 834 aa9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 TSHZ3Q63HK5 1081 aa9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 MCM10Q7L590 875 aa9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 SPTY2D1Q68D10 685 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 INSRP06213 1382 aa9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 TPD52P55327 224 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 CCDC40Q4G0X9 1142 aa9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 AMOTQ4VCS5 1084 aa9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 TBC1D31Q96DN5 1066 aa9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 CCDC8Q9H0W5 538 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 PLEKHH1Q9ULM0 1364 aa9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 POLR1AO95602 1720 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 DESP17661 470 aa9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 ZSCAN26Q16670 478 aa9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 CFAP58Q5T655 872 aa9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 PDCD7Q8N8D1 485 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 AMOTL2Q9Y2J4 779 aa9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 ASXL2Q76L83 1435 aa9.91□□□□□ -0.82
LIMCH1-218ENST00000513024 TMX3Q96JJ7 454 aa9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 ATAD2Q6PL18 1390 aa9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 ADGRL1O94910 1474 aa9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 CCDC96Q2M329 555 aa9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 HSP90AA4PQ58FG1 418 aa9.9□□□□□ -0.82
LIMCH1-218ENST00000513024 APBB1IPQ7Z5R6 666 aaPredicted RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms