RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 FRRS1LQ9P0K9 344 aa5.03□□□□□ -1.6
LIMCH1-212ENST00000511424 K7ELQ4 463 aaPredicted RBP5.02□□□□□ -1.61
LIMCH1-212ENST00000511424 RPLP1P05386 114 aaKnown RBP5.02□□□□□ -1.61
LIMCH1-212ENST00000511424 ELNP15502 786 aa5.02□□□□□ -1.61
LIMCH1-212ENST00000511424 HYAL2Q12891 473 aa5.02□□□□□ -1.61
LIMCH1-212ENST00000511424 MTMR3Q13615 1198 aa5.02□□□□□ -1.61
LIMCH1-212ENST00000511424 COL9A3Q14050 684 aaPredicted RBP5.02□□□□□ -1.61
LIMCH1-212ENST00000511424 HELQQ8TDG4 1101 aa5.02□□□□□ -1.61
LIMCH1-212ENST00000511424 EDEM1Q92611 657 aa5.02□□□□□ -1.61
LIMCH1-212ENST00000511424 ABI2Q9NYB9 513 aaPredicted RBP5.02□□□□□ -1.61
LIMCH1-212ENST00000511424 TMEM88BA6NKF7 163 aa5.01□□□□□ -1.61
LIMCH1-212ENST00000511424 C9orf172C9J069 976 aa5.01□□□□□ -1.61
LIMCH1-212ENST00000511424 MPSTP25325 297 aa5.01□□□□□ -1.61
LIMCH1-212ENST00000511424 SSFA2P28290 1259 aa5.01□□□□□ -1.61
LIMCH1-212ENST00000511424 SOX18P35713 384 aa5.01□□□□□ -1.61
LIMCH1-212ENST00000511424 NRG1Q02297 640 aaPredicted RBP5.01□□□□□ -1.61
LIMCH1-212ENST00000511424 B4GALNT3Q6L9W6 998 aa5.01□□□□□ -1.61
LIMCH1-212ENST00000511424 ALKBH2Q6NS38 261 aa5.01□□□□□ -1.61
LIMCH1-212ENST00000511424 SHISA2Q6UWI4 295 aa5.01□□□□□ -1.61
LIMCH1-212ENST00000511424 IL22RA1Q8N6P7 574 aa5.01□□□□□ -1.61
LIMCH1-212ENST00000511424 ANO2Q9NQ90 1003 aa5.01□□□□□ -1.61
LIMCH1-212ENST00000511424 SMNDC1O75940 238 aaKnown RBP eCLIP5□□□□□ -1.61
LIMCH1-212ENST00000511424 CDC25BP30305 580 aa5□□□□□ -1.61
LIMCH1-212ENST00000511424 EIF1AXP47813 144 aaKnown RBP5□□□□□ -1.61
LIMCH1-212ENST00000511424 CEP135Q66GS9 1140 aa5□□□□□ -1.61
LIMCH1-212ENST00000511424 FMR1NBQ8N0W7 255 aaPredicted RBP5□□□□□ -1.61
LIMCH1-212ENST00000511424 OR13H1Q8NG92 308 aa5□□□□□ -1.61
LIMCH1-212ENST00000511424 LACRTQ9GZZ8 138 aa5□□□□□ -1.61
LIMCH1-212ENST00000511424 ELP3Q9H9T3 547 aa5□□□□□ -1.61
LIMCH1-212ENST00000511424 ADAM23O75077 832 aa4.99□□□□□ -1.61
LIMCH1-212ENST00000511424 FAM13AO94988 1023 aa4.99□□□□□ -1.61
LIMCH1-212ENST00000511424 CES1P23141 567 aa4.99□□□□□ -1.61
LIMCH1-212ENST00000511424 PDE12Q6L8Q7 609 aaKnown RBP4.99□□□□□ -1.61
LIMCH1-212ENST00000511424 SEMA6BQ9H3T3 888 aa4.99□□□□□ -1.61
LIMCH1-212ENST00000511424 TMEM63CQ9P1W3 806 aa4.99□□□□□ -1.61
LIMCH1-212ENST00000511424 KANSL3Q9P2N6 904 aa4.99□□□□□ -1.61
LIMCH1-212ENST00000511424 TRIM33Q9UPN9 1127 aa4.99□□□□□ -1.61
LIMCH1-212ENST00000511424 A6NHS1 94 aa4.98□□□□□ -1.61
LIMCH1-212ENST00000511424 CYP2E1P05181 493 aaPredicted RBP4.98□□□□□ -1.61
LIMCH1-212ENST00000511424 SELPP16109 830 aa4.98□□□□□ -1.61
LIMCH1-212ENST00000511424 MZF1P28698 734 aaPredicted RBP4.98□□□□□ -1.61
LIMCH1-212ENST00000511424 ATP11AP98196 1134 aa4.98□□□□□ -1.61
LIMCH1-212ENST00000511424 FKBP4Q02790 459 aaKnown RBP eCLIP4.98□□□□□ -1.61
LIMCH1-212ENST00000511424 ZNF211Q13398 564 aaPredicted RBP4.98□□□□□ -1.61
LIMCH1-212ENST00000511424 DTWD1Q8N5C7 304 aa4.98□□□□□ -1.61
LIMCH1-212ENST00000511424 TTC9Q92623 222 aa4.98□□□□□ -1.61
LIMCH1-212ENST00000511424 LENG1Q96BZ8 264 aaPredicted RBP4.98□□□□□ -1.61
LIMCH1-212ENST00000511424 POLIQ9UNA4 740 aa4.98□□□□□ -1.61
LIMCH1-212ENST00000511424 USTQ9Y2C2 406 aa4.98□□□□□ -1.61
LIMCH1-212ENST00000511424 PPME1Q9Y570 386 aa4.98□□□□□ -1.61
LIMCH1-212ENST00000511424 PDGFAP04085 211 aa4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 SF3B2Q13435 895 aaKnown RBP4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 MBTPS1Q14703 1052 aa4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 GRIK5Q16478 980 aa4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 COL13A1Q5TAT6 717 aaPredicted RBP4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 FAM117BQ6P1L5 589 aa4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 TXNDC11Q6PKC3 985 aa4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 TXNRD3Q86VQ6 643 aa4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 FBXO11Q86XK2 927 aa4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 GLYCTKQ8IVS8 523 aa4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 DCAF11Q8TEB1 546 aa4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 MUC3BQ9H195 1237 aa4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 RASSF4Q9H2L5 321 aa4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 TPSG1Q9NRR2 321 aa4.97□□□□□ -1.61
LIMCH1-212ENST00000511424 LINC01387J3KSC0 135 aa4.96□□□□□ -1.62
LIMCH1-212ENST00000511424 CDC27P30260 824 aa4.96□□□□□ -1.62
LIMCH1-212ENST00000511424 USP5P45974 858 aa4.96□□□□□ -1.62
LIMCH1-212ENST00000511424 PDE4CQ08493 712 aa4.96□□□□□ -1.62
LIMCH1-212ENST00000511424 ADGRE1Q14246 886 aa4.96□□□□□ -1.62
LIMCH1-212ENST00000511424 IGF2-ASQ6U949 168 aa4.96□□□□□ -1.62
LIMCH1-212ENST00000511424 CACTIN-AS1Q8N1I8 211 aa4.96□□□□□ -1.62
LIMCH1-212ENST00000511424 PMEPA1Q969W9 287 aa4.96□□□□□ -1.62
LIMCH1-212ENST00000511424 TP53INP1Q96A56 240 aa4.96□□□□□ -1.62
LIMCH1-212ENST00000511424 GGNBP2Q9H3C7 697 aa4.96□□□□□ -1.62
LIMCH1-212ENST00000511424 CNTN3Q9P232 1028 aa4.96□□□□□ -1.62
LIMCH1-212ENST00000511424 TIMELESSQ9UNS1 1208 aa4.96□□□□□ -1.62
LIMCH1-212ENST00000511424 H3BRB1 525 aa4.95□□□□□ -1.62
LIMCH1-212ENST00000511424 PHACTR2O75167 634 aa4.95□□□□□ -1.62
LIMCH1-212ENST00000511424 HOXD8P13378 290 aaPredicted RBP4.95□□□□□ -1.62
LIMCH1-212ENST00000511424 PTPRAP18433 802 aa4.95□□□□□ -1.62
LIMCH1-212ENST00000511424 IREB2P48200 963 aaKnown RBP4.95□□□□□ -1.62
LIMCH1-212ENST00000511424 CABP4P57796 275 aa4.95□□□□□ -1.62
LIMCH1-212ENST00000511424 EHHADHQ08426 723 aa4.95□□□□□ -1.62
LIMCH1-212ENST00000511424 MAP4K3Q8IVH8 894 aa4.95□□□□□ -1.62
LIMCH1-212ENST00000511424 C1orf127Q8N9H9 656 aa4.95□□□□□ -1.62
LIMCH1-212ENST00000511424 TMC1Q8TDI8 760 aa4.95□□□□□ -1.62
LIMCH1-212ENST00000511424 PBX4Q9BYU1 374 aa4.95□□□□□ -1.62
LIMCH1-212ENST00000511424 TUT1Q9H6E5 874 aaKnown RBP4.95□□□□□ -1.62
LIMCH1-212ENST00000511424 BRPF3Q9ULD4 1205 aa4.95□□□□□ -1.62
LIMCH1-212ENST00000511424 DEAF1O75398 565 aaPredicted RBP4.94□□□□□ -1.62
LIMCH1-212ENST00000511424 SERPINB4P48594 390 aa4.94□□□□□ -1.62
LIMCH1-212ENST00000511424 PHLDB3Q6NSJ2 640 aa4.94□□□□□ -1.62
LIMCH1-212ENST00000511424 RETREG2Q8NC44 543 aa4.94□□□□□ -1.62
LIMCH1-212ENST00000511424 WFDC12Q8WWY7 111 aa4.94□□□□□ -1.62
LIMCH1-212ENST00000511424 CARD10Q9BWT7 1032 aa4.94□□□□□ -1.62
LIMCH1-212ENST00000511424 MRPL18Q9H0U6 180 aaKnown RBP4.94□□□□□ -1.62
LIMCH1-212ENST00000511424 AKTIPQ9H8T0 292 aa4.94□□□□□ -1.62
LIMCH1-212ENST00000511424 SRA1Q9HD15 236 aaKnown RBP4.94□□□□□ -1.62
LIMCH1-212ENST00000511424 SH2B1Q9NRF2 756 aaPredicted RBP4.94□□□□□ -1.62
LIMCH1-212ENST00000511424 ALX3O95076 343 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms