RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 ABCC6O95255 1503 aa20.77■□□□□ 0.91
NUP54-205ENST00000507257 HMGB1P09429 215 aaKnown RBP20.76■□□□□ 0.91
NUP54-205ENST00000507257 TICAM2Q86XR7 235 aa20.76■□□□□ 0.91
NUP54-205ENST00000507257 CHMP4CQ96CF2 233 aa20.76■□□□□ 0.91
NUP54-205ENST00000507257 KAZALD1Q96I82 304 aa20.76■□□□□ 0.91
NUP54-205ENST00000507257 GOLPH3LQ9H4A5 285 aa20.76■□□□□ 0.91
NUP54-205ENST00000507257 CALCOCO1Q9P1Z2 691 aa20.76■□□□□ 0.91
NUP54-205ENST00000507257 PHRF1Q9P1Y6 1649 aaKnown RBP20.76■□□□□ 0.91
NUP54-205ENST00000507257 Q6ZUG5 572 aa20.75■□□□□ 0.91
NUP54-205ENST00000507257 CCDC8Q9H0W5 538 aaPredicted RBP20.75■□□□□ 0.91
NUP54-205ENST00000507257 BOLA2Q9H3K6 86 aa20.75■□□□□ 0.91
NUP54-205ENST00000507257 LMTK3Q96Q04 1460 aa20.75■□□□□ 0.91
NUP54-205ENST00000507257 ATP5JP18859 108 aa20.74■□□□□ 0.91
NUP54-205ENST00000507257 AKAP4Q5JQC9 854 aa20.74■□□□□ 0.91
NUP54-205ENST00000507257 FILIP1Q7Z7B0 1213 aa20.74■□□□□ 0.91
NUP54-205ENST00000507257 NBPF11Q86T75 865 aa20.74■□□□□ 0.91
NUP54-205ENST00000507257 SUCLG2Q96I99 432 aa20.74■□□□□ 0.91
NUP54-205ENST00000507257 AGXT2Q9BYV1 514 aa20.74■□□□□ 0.91
NUP54-205ENST00000507257 LAMA4Q16363 1823 aa20.74■□□□□ 0.91
NUP54-205ENST00000507257 SCRN1Q12765 414 aa20.74■□□□□ 0.91
NUP54-205ENST00000507257 E4F1Q66K89 784 aaPredicted RBP20.74■□□□□ 0.91
NUP54-205ENST00000507257 NSUN7Q8NE18 718 aaKnown RBP20.74■□□□□ 0.91
NUP54-205ENST00000507257 TIGD1Q96MW7 591 aa20.74■□□□□ 0.91
NUP54-205ENST00000507257 ZNF446Q9NWS9 450 aa20.74■□□□□ 0.91
NUP54-205ENST00000507257 A0A1W2PQ27 194 aa20.73■□□□□ 0.91
NUP54-205ENST00000507257 A0A1W2PQ64 194 aa20.73■□□□□ 0.91
NUP54-205ENST00000507257 A0A1W2PQD8 194 aa20.73■□□□□ 0.91
NUP54-205ENST00000507257 BTBD11A6QL63 1104 aa20.73■□□□□ 0.91
NUP54-205ENST00000507257 CCP110O43303 1012 aa20.73■□□□□ 0.91
NUP54-205ENST00000507257 ESF1Q9H501 851 aaKnown RBP20.73■□□□□ 0.91
NUP54-205ENST00000507257 TLR7Q9NYK1 1049 aaKnown RBP20.73■□□□□ 0.91
NUP54-205ENST00000507257 COL15A1P39059 1388 aa20.73■□□□□ 0.91
NUP54-205ENST00000507257 NRDCO43847 1150 aa20.72■□□□□ 0.91
NUP54-205ENST00000507257 SLC20A2Q08357 652 aa20.72■□□□□ 0.91
NUP54-205ENST00000507257 TEFQ10587 303 aa20.72■□□□□ 0.91
NUP54-205ENST00000507257 PPP1R13BQ96KQ4 1090 aa20.72■□□□□ 0.91
NUP54-205ENST00000507257 BICC1Q9H694 974 aaKnown RBP20.72■□□□□ 0.91
NUP54-205ENST00000507257 LGR6Q9HBX8 967 aa20.72■□□□□ 0.91
NUP54-205ENST00000507257 TRMT1Q9NXH9 659 aaKnown RBP20.72■□□□□ 0.91
NUP54-205ENST00000507257 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.72■□□□□ 0.91
NUP54-205ENST00000507257 SALL1Q9NSC2 1324 aa20.72■□□□□ 0.91
NUP54-205ENST00000507257 A0A0U1RQG5 324 aaPredicted RBP20.72■□□□□ 0.91
NUP54-205ENST00000507257 USP28Q96RU2 1077 aa20.72■□□□□ 0.91
NUP54-205ENST00000507257 TMEM51Q9NW97 253 aa20.72■□□□□ 0.91
NUP54-205ENST00000507257 KCNQ3O43525 872 aa20.71■□□□□ 0.91
NUP54-205ENST00000507257 DDX58O95786 925 aaKnown RBP20.71■□□□□ 0.91
NUP54-205ENST00000507257 HSP90B1P14625 803 aaKnown RBP20.71■□□□□ 0.91
NUP54-205ENST00000507257 FGD1P98174 961 aa20.71■□□□□ 0.91
NUP54-205ENST00000507257 MLECQ14165 292 aa20.71■□□□□ 0.91
NUP54-205ENST00000507257 FMR1NBQ8N0W7 255 aaPredicted RBP20.71■□□□□ 0.91
NUP54-205ENST00000507257 AOPEPQ8N6M6 819 aa20.71■□□□□ 0.91
NUP54-205ENST00000507257 IP6K1Q92551 441 aa20.71■□□□□ 0.91
NUP54-205ENST00000507257 DDX11Q96FC9 970 aa20.71■□□□□ 0.91
NUP54-205ENST00000507257 SRRTQ9BXP5 876 aaKnown RBP20.71■□□□□ 0.91
NUP54-205ENST00000507257 SIPA1L3O60292 1781 aaPredicted RBP20.71■□□□□ 0.91
NUP54-205ENST00000507257 PHLPP2Q6ZVD8 1323 aa20.71■□□□□ 0.91
NUP54-205ENST00000507257 ATP8B1O43520 1251 aa20.7■□□□□ 0.91
NUP54-205ENST00000507257 ANXA1P04083 346 aa20.7■□□□□ 0.91
NUP54-205ENST00000507257 LTKP29376 864 aa20.7■□□□□ 0.91
NUP54-205ENST00000507257 ADALQ6DHV7 355 aa20.7■□□□□ 0.91
NUP54-205ENST00000507257 FSIP1Q8NA03 581 aa20.7■□□□□ 0.91
NUP54-205ENST00000507257 TBX22Q9Y458 520 aa20.7■□□□□ 0.91
NUP54-205ENST00000507257 FHOD1Q9Y613 1164 aa20.7■□□□□ 0.91
NUP54-205ENST00000507257 CYP21A2P08686 494 aa20.7■□□□□ 0.9
NUP54-205ENST00000507257 CYP2C19P33261 490 aa20.7■□□□□ 0.9
NUP54-205ENST00000507257 CWF19L2Q2TBE0 894 aaKnown RBP20.7■□□□□ 0.9
NUP54-205ENST00000507257 DHX32Q7L7V1 743 aaKnown RBP20.7■□□□□ 0.9
NUP54-205ENST00000507257 MRPS27Q92552 414 aaKnown RBP20.7■□□□□ 0.9
NUP54-205ENST00000507257 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.7■□□□□ 0.9
NUP54-205ENST00000507257 AMOTL2Q9Y2J4 779 aa20.7■□□□□ 0.9
NUP54-205ENST00000507257 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.7■□□□□ 0.9
NUP54-205ENST00000507257 V9GYY5 206 aaPredicted RBP20.7■□□□□ 0.9
NUP54-205ENST00000507257 NFAT5O94916 1531 aa20.69■□□□□ 0.9
NUP54-205ENST00000507257 NOL10Q9BSC4 688 aaKnown RBP20.69■□□□□ 0.9
NUP54-205ENST00000507257 RTEL1Q9NZ71 1219 aa20.69■□□□□ 0.9
NUP54-205ENST00000507257 ZNF609O15014 1411 aa20.69■□□□□ 0.9
NUP54-205ENST00000507257 CTDNEP1O95476 244 aa20.68■□□□□ 0.9
NUP54-205ENST00000507257 COPRSQ9NQ92 184 aa20.68■□□□□ 0.9
NUP54-205ENST00000507257 SH3TC1Q8TE82 1336 aa20.68■□□□□ 0.9
NUP54-205ENST00000507257 PTPDC1A2A3K4 754 aa20.68■□□□□ 0.9
NUP54-205ENST00000507257 TULP2O00295 520 aa20.68■□□□□ 0.9
NUP54-205ENST00000507257 ZRANB2O95218 330 aaKnown RBP eCLIP20.68■□□□□ 0.9
NUP54-205ENST00000507257 SFPQP23246 707 aaKnown RBP eCLIP20.68■□□□□ 0.9
NUP54-205ENST00000507257 TPM4P67936 248 aa20.68■□□□□ 0.9
NUP54-205ENST00000507257 MCMDC2Q4G0Z9 681 aa20.68■□□□□ 0.9
NUP54-205ENST00000507257 AMOTQ4VCS5 1084 aa20.68■□□□□ 0.9
NUP54-205ENST00000507257 KIAA1468Q9P260 1216 aa20.68■□□□□ 0.9
NUP54-205ENST00000507257 ADAMTS7Q9UKP4 1686 aa20.68■□□□□ 0.9
NUP54-205ENST00000507257 ARHGAP23Q9P227 1491 aa20.67■□□□□ 0.9
NUP54-205ENST00000507257 GTF2E1P29083 439 aaPredicted RBP20.67■□□□□ 0.9
NUP54-205ENST00000507257 CLCN6P51797 869 aa20.67■□□□□ 0.9
NUP54-205ENST00000507257 ERCC6LQ2NKX8 1250 aa20.67■□□□□ 0.9
NUP54-205ENST00000507257 ARMCX5Q6P1M9 558 aa20.67■□□□□ 0.9
NUP54-205ENST00000507257 FBXL16Q8N461 479 aa20.67■□□□□ 0.9
NUP54-205ENST00000507257 LTV1Q96GA3 475 aaPredicted RBP20.67■□□□□ 0.9
NUP54-205ENST00000507257 DDX21Q9NR30 783 aaKnown RBP eCLIP20.67■□□□□ 0.9
NUP54-205ENST00000507257 ARGLU1Q9NWB6 273 aaPredicted RBP20.67■□□□□ 0.9
NUP54-205ENST00000507257 TPM1P09493 284 aa20.66■□□□□ 0.9
NUP54-205ENST00000507257 ME1P48163 572 aa20.66■□□□□ 0.9
NUP54-205ENST00000507257 ETF1P62495 437 aaKnown RBP20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms