RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TAF5LO75529 589 aa14.28□□□□□ -0.12
NUP54-202ENST00000502850 LETM1O95202 739 aaPredicted RBP14.28□□□□□ -0.12
NUP54-202ENST00000502850 F13A1P00488 732 aa14.28□□□□□ -0.12
NUP54-202ENST00000502850 A1BGP04217 495 aa14.28□□□□□ -0.12
NUP54-202ENST00000502850 SYT1P21579 422 aa14.28□□□□□ -0.12
NUP54-202ENST00000502850 ADCK5Q3MIX3 580 aa14.28□□□□□ -0.12
NUP54-202ENST00000502850 HSP90AB3PQ58FF7 597 aa14.28□□□□□ -0.12
NUP54-202ENST00000502850 FOXD4L5Q5VV16 416 aaPredicted RBP14.28□□□□□ -0.12
NUP54-202ENST00000502850 FOXD4L4Q8WXT5 416 aaPredicted RBP14.28□□□□□ -0.12
NUP54-202ENST00000502850 DBNDD2Q9BQY9 259 aa14.28□□□□□ -0.12
NUP54-202ENST00000502850 HELLSQ9NRZ9 838 aa14.28□□□□□ -0.12
NUP54-202ENST00000502850 DISP2A7MBM2 1401 aa14.27□□□□□ -0.12
NUP54-202ENST00000502850 HMGB1P09429 215 aaKnown RBP14.27□□□□□ -0.12
NUP54-202ENST00000502850 TCIRG1Q13488 830 aa14.27□□□□□ -0.12
NUP54-202ENST00000502850 CCDC83Q8IWF9 413 aa14.27□□□□□ -0.12
NUP54-202ENST00000502850 DNAJC2Q99543 621 aaKnown RBP14.27□□□□□ -0.12
NUP54-202ENST00000502850 PLA2G12BQ9BX93 195 aa14.27□□□□□ -0.12
NUP54-202ENST00000502850 ZBTB3Q9H5J0 574 aa14.27□□□□□ -0.12
NUP54-202ENST00000502850 AKAP2Q9Y2D5 859 aa14.27□□□□□ -0.12
NUP54-202ENST00000502850 GJB2P29033 226 aa14.26□□□□□ -0.13
NUP54-202ENST00000502850 EN1Q05925 392 aaPredicted RBP14.26□□□□□ -0.13
NUP54-202ENST00000502850 ATG9AQ7Z3C6 839 aa14.26□□□□□ -0.13
NUP54-202ENST00000502850 CHMP4CQ96CF2 233 aa14.26□□□□□ -0.13
NUP54-202ENST00000502850 MYH3P11055 1940 aa14.26□□□□□ -0.13
NUP54-202ENST00000502850 TRIM37O94972 964 aa14.26□□□□□ -0.13
NUP54-202ENST00000502850 PCCAP05165 728 aaPredicted RBP14.26□□□□□ -0.13
NUP54-202ENST00000502850 UBE2HP62256 183 aa14.26□□□□□ -0.13
NUP54-202ENST00000502850 CCDC57Q2TAC2 916 aa14.26□□□□□ -0.13
NUP54-202ENST00000502850 JARID2Q92833 1246 aaPredicted RBP14.26□□□□□ -0.13
NUP54-202ENST00000502850 PAG1Q9NWQ8 432 aa14.26□□□□□ -0.13
NUP54-202ENST00000502850 TMEM63CQ9P1W3 806 aa14.26□□□□□ -0.13
NUP54-202ENST00000502850 TNS1Q9HBL0 1735 aaKnown RBP14.25□□□□□ -0.13
NUP54-202ENST00000502850 HS1BP3Q53T59 392 aa14.25□□□□□ -0.13
NUP54-202ENST00000502850 ZNF589Q86UQ0 364 aaPredicted RBP14.25□□□□□ -0.13
NUP54-202ENST00000502850 NEUROD6Q96NK8 337 aa14.25□□□□□ -0.13
NUP54-202ENST00000502850 DSCC1Q9BVC3 393 aa14.25□□□□□ -0.13
NUP54-202ENST00000502850 CDHR2Q9BYE9 1310 aa14.25□□□□□ -0.13
NUP54-202ENST00000502850 TCHHQ07283 1943 aa14.24□□□□□ -0.13
NUP54-202ENST00000502850 CPA1P15085 419 aa14.24□□□□□ -0.13
NUP54-202ENST00000502850 CLCN1P35523 988 aa14.24□□□□□ -0.13
NUP54-202ENST00000502850 ME3Q16798 604 aa14.24□□□□□ -0.13
NUP54-202ENST00000502850 USP48Q86UV5 1035 aa14.24□□□□□ -0.13
NUP54-202ENST00000502850 FAM184AQ8NB25 1140 aa14.24□□□□□ -0.13
NUP54-202ENST00000502850 NEK1Q96PY6 1258 aa14.24□□□□□ -0.13
NUP54-202ENST00000502850 CEP126Q9P2H0 1117 aa14.24□□□□□ -0.13
NUP54-202ENST00000502850 MAP3K15Q6ZN16 1313 aa14.24□□□□□ -0.13
NUP54-202ENST00000502850 LARGE1O95461 756 aa14.23□□□□□ -0.13
NUP54-202ENST00000502850 ZFYP08048 801 aaPredicted RBP14.23□□□□□ -0.13
NUP54-202ENST00000502850 CCDC158Q5M9N0 1113 aa14.23□□□□□ -0.13
NUP54-202ENST00000502850 CCDC183Q5T5S1 534 aa14.23□□□□□ -0.13
NUP54-202ENST00000502850 ZBTB38Q8NAP3 1195 aaPredicted RBP14.23□□□□□ -0.13
NUP54-202ENST00000502850 RBM27Q9P2N5 1060 aaKnown RBP14.23□□□□□ -0.13
NUP54-202ENST00000502850 TPCN1Q9ULQ1 816 aa14.23□□□□□ -0.13
NUP54-202ENST00000502850 MTMR6Q9Y217 621 aa14.23□□□□□ -0.13
NUP54-202ENST00000502850 BCL9O00512 1426 aa14.23□□□□□ -0.13
NUP54-202ENST00000502850 SYCE3A1L190 88 aa14.23□□□□□ -0.13
NUP54-202ENST00000502850 IFIT1P09914 478 aaKnown RBP14.23□□□□□ -0.13
NUP54-202ENST00000502850 PRIM1P49642 420 aaKnown RBP14.23□□□□□ -0.13
NUP54-202ENST00000502850 TAF7LQ5H9L4 462 aa14.23□□□□□ -0.13
NUP54-202ENST00000502850 DDX46Q7L014 1031 aaKnown RBP14.23□□□□□ -0.13
NUP54-202ENST00000502850 CDCA7Q9BWT1 371 aaPredicted RBP14.23□□□□□ -0.13
NUP54-202ENST00000502850 TSPY26PQ9H489 355 aa14.23□□□□□ -0.13
NUP54-202ENST00000502850 MYH7P12883 1935 aa14.22□□□□□ -0.13
NUP54-202ENST00000502850 LAMA4Q16363 1823 aa14.22□□□□□ -0.13
NUP54-202ENST00000502850 A0A1B0GUL7 405 aa14.22□□□□□ -0.13
NUP54-202ENST00000502850 ESPNB1AK53 854 aa14.22□□□□□ -0.13
NUP54-202ENST00000502850 GOLIM4O00461 696 aa14.22□□□□□ -0.13
NUP54-202ENST00000502850 APBA3O96018 575 aa14.22□□□□□ -0.13
NUP54-202ENST00000502850 LARP1BQ659C4 914 aaKnown RBP14.22□□□□□ -0.13
NUP54-202ENST00000502850 GIGYF2Q6Y7W6 1299 aaKnown RBP14.22□□□□□ -0.13
NUP54-202ENST00000502850 PIGBQ92521 554 aa14.22□□□□□ -0.13
NUP54-202ENST00000502850 EDC3Q96F86 508 aaKnown RBP14.22□□□□□ -0.13
NUP54-202ENST00000502850 KIF3AQ9Y496 699 aa14.22□□□□□ -0.13
NUP54-202ENST00000502850 VPS37CA5D8V6 355 aaPredicted RBP14.21□□□□□ -0.13
NUP54-202ENST00000502850 KRT85P78386 507 aa14.21□□□□□ -0.13
NUP54-202ENST00000502850 IFIT5Q13325 482 aaKnown RBP14.21□□□□□ -0.13
NUP54-202ENST00000502850 EZH2Q15910 746 aaKnown RBP14.21□□□□□ -0.13
NUP54-202ENST00000502850 DDB1Q16531 1140 aa14.21□□□□□ -0.13
NUP54-202ENST00000502850 ZMYM1Q5SVZ6 1142 aa14.21□□□□□ -0.13
NUP54-202ENST00000502850 DNAJC10Q8IXB1 793 aa14.21□□□□□ -0.13
NUP54-202ENST00000502850 RBSNQ9H1K0 784 aa14.21□□□□□ -0.13
NUP54-202ENST00000502850 RRAGDQ9NQL2 400 aaPredicted RBP14.21□□□□□ -0.13
NUP54-202ENST00000502850 CICQ96RK0 1608 aaPredicted RBP14.21□□□□□ -0.13
NUP54-202ENST00000502850 DOT1LQ8TEK3 1739 aa14.21□□□□□ -0.13
NUP54-202ENST00000502850 ELP1O95163 1332 aa14.2□□□□□ -0.14
NUP54-202ENST00000502850 RNF113AO15541 343 aaKnown RBP14.2□□□□□ -0.14
NUP54-202ENST00000502850 CSF1RP07333 972 aa14.2□□□□□ -0.14
NUP54-202ENST00000502850 TOB2Q14106 344 aaPredicted RBP14.2□□□□□ -0.14
NUP54-202ENST00000502850 TTC39AQ5SRH9 613 aa14.2□□□□□ -0.14
NUP54-202ENST00000502850 GORABQ5T7V8 394 aa14.2□□□□□ -0.14
NUP54-202ENST00000502850 GTF3C6Q969F1 213 aa14.2□□□□□ -0.14
NUP54-202ENST00000502850 CAMKK2Q96RR4 588 aa14.2□□□□□ -0.14
NUP54-202ENST00000502850 LLPHQ9BRT6 129 aaKnown RBP14.2□□□□□ -0.14
NUP54-202ENST00000502850 CNPY2Q9Y2B0 182 aa14.2□□□□□ -0.14
NUP54-202ENST00000502850 NUP98P52948 1817 aa14.2□□□□□ -0.14
NUP54-202ENST00000502850 PSDA5PKW4 1024 aaPredicted RBP14.19□□□□□ -0.14
NUP54-202ENST00000502850 ST3GAL1Q11201 340 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 LRRC24Q50LG9 513 aa14.19□□□□□ -0.14
NUP54-202ENST00000502850 LARP6Q9BRS8 491 aaKnown RBP14.19□□□□□ -0.14
NUP54-202ENST00000502850 CTNNA3Q9UI47 895 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 166.6 ms