RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 COL15A1P39059 1388 aa19.14■□□□□ 0.66
MSH5-SAPCD1-208ENST00000498473 PTMAP06454 111 aaKnown RBP19.14■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 PTPN12Q05209 780 aaKnown RBP19.14■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 RNF20Q5VTR2 975 aa19.14■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 DBNLQ9UJU6 430 aaKnown RBP19.14■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 PKD1L3Q7Z443 1732 aa19.14■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 ATP5JP18859 108 aa19.13■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 PIP4K2AP48426 406 aaPredicted RBP19.13■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 USPL1Q5W0Q7 1092 aa19.13■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 CDC37L1Q7L3B6 337 aa19.13■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 ADCY5O95622 1261 aa19.13■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 RABL6Q3YEC7 729 aaPredicted RBP19.13■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 TTC6Q86TZ1 520 aa19.13■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 IFNL2Q8IZJ0 200 aa19.13■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.13■□□□□ 0.655e-7■■□□□ 12.3
MSH5-SAPCD1-208ENST00000498473 ARFGEF2Q9Y6D5 1785 aa19.13■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 TFCP2Q12800 502 aa19.12■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 ANKRD1Q15327 319 aa19.12■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 TNNI3KQ59H18 835 aa19.12■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 HMG20BQ9P0W2 317 aa19.12■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 FPGT-TNNI3KV9GXZ4 949 aa19.12■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 BRWD3Q6RI45 1802 aa19.12■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 PCDH11XQ9BZA7 1347 aa19.12■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 PCDH11YQ9BZA8 1340 aa19.12■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 SNRPA1P09661 255 aaKnown RBP19.12■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 KDM4AO75164 1064 aa19.11■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 PDIA4P13667 645 aaKnown RBP19.11■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 KCNQ2O43526 872 aa19.1■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 ZNF772Q68DY9 489 aaPredicted RBP19.1■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 FAM173BQ6P4H8 233 aa19.1■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 BARGINQ6ZT62 677 aa19.1■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 FERMT3Q86UX7 667 aa19.1■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 MPNDQ8N594 471 aa19.1■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 AP5Z1O43299 807 aa19.1■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 CHGBP05060 677 aa19.1■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 THRAP3Q9Y2W1 955 aaKnown RBP19.1■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 NDUFB9Q9Y6M9 179 aa19.1■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 ELP1O95163 1332 aa19.1■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 ZNF609O15014 1411 aa19.09■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 PDCP20941 246 aa19.09■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 CASP7P55210 303 aa19.09■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 KRT85P78386 507 aa19.09■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 UBE3BQ7Z3V4 1068 aa19.09■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 ZNF830Q96NB3 372 aaPredicted RBP19.09■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 KIAA2012Q0VF49 1180 aa19.09■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 TOGARAM1Q9Y4F4 1720 aa19.09■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 DCAF5Q96JK2 942 aa19.08■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 DBNDD2Q9BQY9 259 aa19.08■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 RFX7Q2KHR2 1363 aa19.08■□□□□ 0.65
MSH5-SAPCD1-208ENST00000498473 TNS2Q63HR2 1409 aa19.08■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 ATP5J2-PTCD1G3V325 749 aa19.08■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 PTCD1O75127 700 aaKnown RBP19.08■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 RXRBP28702 533 aa19.08■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 FMNL2Q96PY5 1086 aa19.08■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 GOLGB1Q14789 3259 aaKnown RBP19.07■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 LIG1P18858 919 aa19.07■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 STK3Q13188 491 aa19.07■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 TTC5Q8N0Z6 440 aa19.07■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 SEC62Q99442 399 aaKnown RBP19.07■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 CCDC129Q6ZRS4 1044 aa19.06■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 HAUS7Q99871 368 aa19.06■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 LAMB4A4D0S4 1761 aa19.06■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 A0A087WZG4 1122 aa19.06■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 UQCRHLA0A096LP55 91 aa19.06■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 UQCRHP07919 91 aa19.06■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 RBM6P78332 1123 aaKnown RBP19.06■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 KRT32Q14532 448 aa19.06■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 NEK1Q96PY6 1258 aa19.06■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 TTC12Q9H892 705 aaPredicted RBP19.06■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 SASS6Q6UVJ0 657 aa19.05■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 PIBF1Q8WXW3 757 aa19.05■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 PLEKHG2Q9H7P9 1386 aa19.05■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 THSD7AQ9UPZ6 1657 aa19.05■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 LAMA4Q16363 1823 aa19.05■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 PLBD2Q8NHP8 589 aa19.05■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 GTF3C6Q969F1 213 aa19.05■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 DNAJC2Q99543 621 aaKnown RBP19.05■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 DOT1LQ8TEK3 1739 aa19.05■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 JAK2O60674 1132 aa19.04■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 CYP21A2P08686 494 aa19.04■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 TFIP11Q9UBB9 837 aaKnown RBP19.04■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 U3KPZ7 1027 aaPredicted RBP19.04■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 CCDC192P0DO97 292 aa19.04■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 KCNQ4P56696 695 aa19.04■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 CABP4P57796 275 aa19.04■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 FOXO4P98177 505 aa19.04■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 MCMDC2Q4G0Z9 681 aa19.04■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 ITGB4P16144 1822 aa19.04■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 LMBR1LQ6UX01 489 aa19.03■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 Q6ZUG5 572 aa19.03■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 LEO1Q8WVC0 666 aaPredicted RBP19.03■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 SCAND2PQ9GZW5 306 aaPredicted RBP19.03■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 NUP62CLQ9H1M0 184 aa19.03■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 CHMP3Q9Y3E7 222 aa19.03■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 H7C1W4 665 aa19.02■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 DDX46Q7L014 1031 aaKnown RBP19.02■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 MRVI1Q9Y6F6 885 aa19.02■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 NBPF26B4DH59 902 aa19.02■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 NOLC1Q14978 699 aaKnown RBP eCLIP19.02■□□□□ 0.644e-7■■■■□ 22.5
MSH5-SAPCD1-208ENST00000498473 MAP3K11Q16584 847 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms