RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 FAM182BQ5T319 152 aa6.64□□□□□ -1.35
USP54-217ENST00000498213 C14orf37Q86TY3 774 aa6.64□□□□□ -1.35
USP54-217ENST00000498213 STAG2Q8N3U4 1231 aa6.64□□□□□ -1.35
USP54-217ENST00000498213 HSH2DQ96JZ2 352 aa6.64□□□□□ -1.35
USP54-217ENST00000498213 C2orf49Q9BVC5 232 aaPredicted RBP6.64□□□□□ -1.35
USP54-217ENST00000498213 SEMA6BQ9H3T3 888 aa6.64□□□□□ -1.35
USP54-217ENST00000498213 SERPINA10Q9UK55 444 aa6.64□□□□□ -1.35
USP54-217ENST00000498213 CNTLNQ9NXG0 1405 aa6.64□□□□□ -1.35
USP54-217ENST00000498213 GOLGA3Q08378 1498 aa6.64□□□□□ -1.35
USP54-217ENST00000498213 VWDEQ8N2E2 1590 aa6.64□□□□□ -1.35
USP54-217ENST00000498213 FCHSD1Q86WN1 690 aa6.63□□□□□ -1.35
USP54-217ENST00000498213 ANKLE2Q86XL3 938 aa6.63□□□□□ -1.35
USP54-217ENST00000498213 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.63□□□□□ -1.35
USP54-217ENST00000498213 BRD7Q9NPI1 651 aa6.63□□□□□ -1.35
USP54-217ENST00000498213 AVENQ9NQS1 362 aaPredicted RBP6.63□□□□□ -1.35
USP54-217ENST00000498213 HCN2Q9UL51 889 aa6.63□□□□□ -1.35
USP54-217ENST00000498213 CEP170BQ9Y4F5 1589 aaPredicted RBP6.63□□□□□ -1.35
USP54-217ENST00000498213 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.62□□□□□ -1.35
USP54-217ENST00000498213 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.62□□□□□ -1.35
USP54-217ENST00000498213 PCBP4P57723 403 aaKnown RBP6.62□□□□□ -1.35
USP54-217ENST00000498213 SUSD3Q96L08 255 aa6.62□□□□□ -1.35
USP54-217ENST00000498213 ARXQ96QS3 562 aa6.62□□□□□ -1.35
USP54-217ENST00000498213 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.62□□□□□ -1.35
USP54-217ENST00000498213 CFAP74Q9C0B2 1584 aa6.61□□□□□ -1.35
USP54-217ENST00000498213 FAM135BQ49AJ0 1406 aa6.61□□□□□ -1.35
USP54-217ENST00000498213 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.61□□□□□ -1.35
USP54-217ENST00000498213 EFSO43281 561 aa6.61□□□□□ -1.35
USP54-217ENST00000498213 FOXO3O43524 673 aa6.61□□□□□ -1.35
USP54-217ENST00000498213 ITGB7P26010 798 aa6.61□□□□□ -1.35
USP54-217ENST00000498213 GATA4P43694 442 aa6.61□□□□□ -1.35
USP54-217ENST00000498213 RTN1Q16799 776 aa6.61□□□□□ -1.35
USP54-217ENST00000498213 ZNF468Q5VIY5 522 aaPredicted RBP6.61□□□□□ -1.35
USP54-217ENST00000498213 EFCAB2Q5VUJ9 269 aa6.61□□□□□ -1.35
USP54-217ENST00000498213 TRIM11Q96F44 468 aa6.61□□□□□ -1.35
USP54-217ENST00000498213 PLVAPQ9BX97 442 aa6.61□□□□□ -1.35
USP54-217ENST00000498213 KRTAP9-2Q9BYQ4 174 aa6.61□□□□□ -1.35
USP54-217ENST00000498213 STRN4Q9NRL3 753 aa6.61□□□□□ -1.35
USP54-217ENST00000498213 NEURL4Q96JN8 1562 aa6.61□□□□□ -1.35
USP54-217ENST00000498213 JCADQ9P266 1359 aa6.6□□□□□ -1.35
USP54-217ENST00000498213 SPATA31C1P0DKV0 1188 aa6.6□□□□□ -1.35
USP54-217ENST00000498213 ZNF280CQ8ND82 737 aa6.6□□□□□ -1.35
USP54-217ENST00000498213 MYO3AQ8NEV4 1616 aa6.6□□□□□ -1.35
USP54-217ENST00000498213 RNF17Q9BXT8 1623 aaKnown RBP6.6□□□□□ -1.35
USP54-217ENST00000498213 AGLP35573 1532 aa6.6□□□□□ -1.35
USP54-217ENST00000498213 NPHP4O75161 1426 aaPredicted RBP6.59□□□□□ -1.35
USP54-217ENST00000498213 ACIN1Q9UKV3 1341 aaKnown RBP6.59□□□□□ -1.35
USP54-217ENST00000498213 LRP6O75581 1613 aa6.59□□□□□ -1.35
USP54-217ENST00000498213 SUPT5HO00267 1087 aaKnown RBP6.59□□□□□ -1.35
USP54-217ENST00000498213 ALAS2P22557 587 aa6.59□□□□□ -1.35
USP54-217ENST00000498213 TYRO3Q06418 890 aa6.59□□□□□ -1.35
USP54-217ENST00000498213 SPEM2Q0P670 501 aa6.59□□□□□ -1.35
USP54-217ENST00000498213 SFSWAPQ12872 951 aaKnown RBP6.59□□□□□ -1.35
USP54-217ENST00000498213 SWI5Q1ZZU3 235 aa6.59□□□□□ -1.35
USP54-217ENST00000498213 ZMYM1Q5SVZ6 1142 aa6.59□□□□□ -1.35
USP54-217ENST00000498213 SYT9Q86SS6 491 aa6.59□□□□□ -1.35
USP54-217ENST00000498213 PBXIP1Q96AQ6 731 aa6.59□□□□□ -1.35
USP54-217ENST00000498213 KCNH4Q9UQ05 1017 aa6.59□□□□□ -1.35
USP54-217ENST00000498213 DIP2CQ9Y2E4 1556 aa6.59□□□□□ -1.35
USP54-217ENST00000498213 SUPT6HQ7KZ85 1726 aaKnown RBP6.59□□□□□ -1.36
USP54-217ENST00000498213 RGS12O14924 1447 aa6.59□□□□□ -1.36
USP54-217ENST00000498213 PLCH2O75038 1416 aa6.59□□□□□ -1.36
USP54-217ENST00000498213 KRTAP9-6A0A140TA67 174 aa6.58□□□□□ -1.36
USP54-217ENST00000498213 PRMT3O60678 531 aa6.58□□□□□ -1.36
USP54-217ENST00000498213 EPB42P16452 691 aa6.58□□□□□ -1.36
USP54-217ENST00000498213 WEE1P30291 646 aa6.58□□□□□ -1.36
USP54-217ENST00000498213 ELOAQ14241 798 aaKnown RBP6.58□□□□□ -1.36
USP54-217ENST00000498213 BTLAQ7Z6A9 289 aa6.58□□□□□ -1.36
USP54-217ENST00000498213 C7orf43Q8WVR3 580 aa6.58□□□□□ -1.36
USP54-217ENST00000498213 PNMA5Q96PV4 448 aa6.58□□□□□ -1.36
USP54-217ENST00000498213 A2ML1A8K2U0 1454 aa6.58□□□□□ -1.36
USP54-217ENST00000498213 ELOA3CA0A087WX78 387 aaPredicted RBP6.57□□□□□ -1.36
USP54-217ENST00000498213 SPDYE3A6NKU9 549 aa6.57□□□□□ -1.36
USP54-217ENST00000498213 ELOA3DA6NLF2 546 aaPredicted RBP6.57□□□□□ -1.36
USP54-217ENST00000498213 TGFBR3LH3BV60 316 aa6.57□□□□□ -1.36
USP54-217ENST00000498213 DGKZQ13574 1117 aa6.57□□□□□ -1.36
USP54-217ENST00000498213 ELOA3BQ3SY89 546 aa6.57□□□□□ -1.36
USP54-217ENST00000498213 GGT6Q6P531 493 aa6.57□□□□□ -1.36
USP54-217ENST00000498213 RAB44Q7Z6P3 723 aaPredicted RBP6.57□□□□□ -1.36
USP54-217ENST00000498213 ELOA3Q8NG57 546 aa6.57□□□□□ -1.36
USP54-217ENST00000498213 STK32AQ8WU08 396 aa6.57□□□□□ -1.36
USP54-217ENST00000498213 PRIMPOLQ96LW4 560 aa6.57□□□□□ -1.36
USP54-217ENST00000498213 QTRT2Q9H974 415 aaKnown RBP6.57□□□□□ -1.36
USP54-217ENST00000498213 ZMIZ1Q9ULJ6 1067 aa6.57□□□□□ -1.36
USP54-217ENST00000498213 ZNF518AQ6AHZ1 1483 aa6.57□□□□□ -1.36
USP54-217ENST00000498213 CDK12Q9NYV4 1490 aaPredicted RBP6.57□□□□□ -1.36
USP54-217ENST00000498213 AFF2P51816 1311 aa6.56□□□□□ -1.36
USP54-217ENST00000498213 ZNF142P52746 1687 aaPredicted RBP6.56□□□□□ -1.36
USP54-217ENST00000498213 ATG7O95352 703 aa6.56□□□□□ -1.36
USP54-217ENST00000498213 TBC1D8BQ0IIM8 1120 aa6.56□□□□□ -1.36
USP54-217ENST00000498213 PRRT3Q5FWE3 981 aa6.56□□□□□ -1.36
USP54-217ENST00000498213 IER5Q5VY09 327 aa6.56□□□□□ -1.36
USP54-217ENST00000498213 THEMISQ8N1K5 641 aaPredicted RBP6.56□□□□□ -1.36
USP54-217ENST00000498213 BHMTQ93088 406 aa6.56□□□□□ -1.36
USP54-217ENST00000498213 SLC30A3Q99726 388 aa6.56□□□□□ -1.36
USP54-217ENST00000498213 KLK14Q9P0G3 267 aa6.56□□□□□ -1.36
USP54-217ENST00000498213 DNMT1P26358 1616 aaKnown RBP6.56□□□□□ -1.36
USP54-217ENST00000498213 NUP153P49790 1475 aaKnown RBP6.55□□□□□ -1.36
USP54-217ENST00000498213 STRCP1A6NGW2 1772 aa6.55□□□□□ -1.36
USP54-217ENST00000498213 SIN3BO75182 1162 aa6.55□□□□□ -1.36
USP54-217ENST00000498213 APBA3O96018 575 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms