RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CWC22Q9HCG8 908 aaKnown RBP10.01□□□□□ -0.81
USP54-215ENST00000497106 K7ELQ4 463 aaPredicted RBP10□□□□□ -0.81
USP54-215ENST00000497106 CSF1RP07333 972 aa10□□□□□ -0.81
USP54-215ENST00000497106 PDE6BP35913 854 aa10□□□□□ -0.81
USP54-215ENST00000497106 TXNRD1Q16881 649 aa10□□□□□ -0.81
USP54-215ENST00000497106 CPLX2Q6PUV4 134 aaKnown RBP10□□□□□ -0.81
USP54-215ENST00000497106 XAGE2Q96GT9 111 aa10□□□□□ -0.81
USP54-215ENST00000497106 DENND2AQ9ULE3 1009 aa10□□□□□ -0.81
USP54-215ENST00000497106 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10□□□□□ -0.81
USP54-215ENST00000497106 IGSF3O75054 1194 aa10□□□□□ -0.81
USP54-215ENST00000497106 GSTO1P78417 241 aa10□□□□□ -0.81
USP54-215ENST00000497106 NUCB2P80303 420 aa10□□□□□ -0.81
USP54-215ENST00000497106 MCMDC2Q4G0Z9 681 aa10□□□□□ -0.81
USP54-215ENST00000497106 OTUD7AQ8TE49 926 aaPredicted RBP10□□□□□ -0.81
USP54-215ENST00000497106 CIZ1Q9ULV3 898 aaPredicted RBP10□□□□□ -0.81
USP54-215ENST00000497106 RNF113AO15541 343 aaKnown RBP10□□□□□ -0.81
USP54-215ENST00000497106 LDHCP07864 332 aa10□□□□□ -0.81
USP54-215ENST00000497106 IMMTQ16891 758 aaKnown RBP10□□□□□ -0.81
USP54-215ENST00000497106 AIDAQ96BJ3 306 aa10□□□□□ -0.81
USP54-215ENST00000497106 EAF2Q96CJ1 260 aaPredicted RBP10□□□□□ -0.81
USP54-215ENST00000497106 DBNDD2Q9BQY9 259 aa10□□□□□ -0.81
USP54-215ENST00000497106 ZSCAN21Q9Y5A6 473 aaPredicted RBP10□□□□□ -0.81
USP54-215ENST00000497106 IDH1O75874 414 aaKnown RBP9.99□□□□□ -0.81
USP54-215ENST00000497106 GSPT1P15170 499 aaKnown RBP9.99□□□□□ -0.81
USP54-215ENST00000497106 UBE4AQ14139 1066 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 CSPP1Q1MSJ5 1256 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 SYNE3Q6ZMZ3 975 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 GREM2Q9H772 168 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 SEMA3EO15041 775 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 ALDH1B1P30837 517 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 RPS8P62241 208 aaKnown RBP9.99□□□□□ -0.81
USP54-215ENST00000497106 CERS3Q8IU89 383 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 KBTBD3Q8NAB2 608 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 SNX21Q969T3 373 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 HAUS7Q99871 368 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 RAI14Q9P0K7 980 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 ATP6V1DQ9Y5K8 247 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 NEK4P51957 841 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 KLHDC4Q8TBB5 520 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 EYA3Q99504 573 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 NAP1L2Q9ULW6 460 aaPredicted RBP9.99□□□□□ -0.81
USP54-215ENST00000497106 GNAT2P19087 354 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 EPHA10Q5JZY3 1008 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 LRP10Q7Z4F1 713 aa9.99□□□□□ -0.81
USP54-215ENST00000497106 ZNF594Q96JF6 807 aaPredicted RBP9.99□□□□□ -0.81
USP54-215ENST00000497106 ERICH2A1L162 156 aa9.98□□□□□ -0.81
USP54-215ENST00000497106 PDE8BO95263 885 aa9.98□□□□□ -0.81
USP54-215ENST00000497106 SART3Q15020 963 aaKnown RBP9.98□□□□□ -0.81
USP54-215ENST00000497106 TSHZ3Q63HK5 1081 aa9.98□□□□□ -0.81
USP54-215ENST00000497106 BLOC1S2Q6QNY1 142 aa9.98□□□□□ -0.81
USP54-215ENST00000497106 ARHGEF1Q92888 912 aaKnown RBP9.98□□□□□ -0.81
USP54-215ENST00000497106 NRAPQ86VF7 1730 aa9.98□□□□□ -0.81
USP54-215ENST00000497106 SASH1O94885 1247 aa9.98□□□□□ -0.81
USP54-215ENST00000497106 FAM182BQ5T319 152 aa9.98□□□□□ -0.81
USP54-215ENST00000497106 SGSM2O43147 1006 aa9.98□□□□□ -0.81
USP54-215ENST00000497106 POLD1P28340 1107 aa9.98□□□□□ -0.81
USP54-215ENST00000497106 SF3B3Q15393 1217 aaKnown RBP9.98□□□□□ -0.81
USP54-215ENST00000497106 ERFEQ4G0M1 354 aa9.98□□□□□ -0.81
USP54-215ENST00000497106 RTL9Q8NET4 1388 aa9.97□□□□□ -0.81
USP54-215ENST00000497106 PLSCR1O15162 318 aa9.97□□□□□ -0.81
USP54-215ENST00000497106 USP26Q9BXU7 913 aa9.97□□□□□ -0.81
USP54-215ENST00000497106 BSDC1Q9NW68 430 aaPredicted RBP9.97□□□□□ -0.81
USP54-215ENST00000497106 SERPINB2P05120 415 aa9.97□□□□□ -0.81
USP54-215ENST00000497106 CASP7P55210 303 aa9.97□□□□□ -0.81
USP54-215ENST00000497106 NMIQ13287 307 aaPredicted RBP9.97□□□□□ -0.81
USP54-215ENST00000497106 SLKQ9H2G2 1235 aaPredicted RBP9.97□□□□□ -0.81
USP54-215ENST00000497106 NTSR2O95665 410 aa9.97□□□□□ -0.81
USP54-215ENST00000497106 SH2B1Q9NRF2 756 aaPredicted RBP9.97□□□□□ -0.81
USP54-215ENST00000497106 LEMD3Q9Y2U8 911 aa9.97□□□□□ -0.81
USP54-215ENST00000497106 CCDC171Q6TFL3 1326 aa9.97□□□□□ -0.81
USP54-215ENST00000497106 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.97□□□□□ -0.81
USP54-215ENST00000497106 DDX11L8A8MPP1 907 aa9.97□□□□□ -0.81
USP54-215ENST00000497106 BBOX1O75936 387 aa9.97□□□□□ -0.81
USP54-215ENST00000497106 ATP2B4P23634 1241 aa9.97□□□□□ -0.81
USP54-215ENST00000497106 RFX5P48382 616 aaPredicted RBP9.97□□□□□ -0.81
USP54-215ENST00000497106 TOMM22Q9NS69 142 aa9.97□□□□□ -0.81
USP54-215ENST00000497106 SIPA1L3O60292 1781 aaPredicted RBP9.96□□□□□ -0.81
USP54-215ENST00000497106 DHX16O60231 1041 aaKnown RBP9.96□□□□□ -0.81
USP54-215ENST00000497106 LRRC24Q50LG9 513 aa9.96□□□□□ -0.81
USP54-215ENST00000497106 RNF41Q9H4P4 317 aaPredicted RBP9.96□□□□□ -0.81
USP54-215ENST00000497106 SLC10A5Q5PT55 438 aa9.96□□□□□ -0.82
USP54-215ENST00000497106 PI4K2BQ8TCG2 481 aa9.96□□□□□ -0.82
USP54-215ENST00000497106 SLC4A9Q96Q91 983 aa9.96□□□□□ -0.82
USP54-215ENST00000497106 PDRG1Q9NUG6 133 aa9.96□□□□□ -0.82
USP54-215ENST00000497106 DBNLQ9UJU6 430 aaKnown RBP9.96□□□□□ -0.82
USP54-215ENST00000497106 DEKP35659 375 aaKnown RBP9.96□□□□□ -0.82
USP54-215ENST00000497106 TIMM10P62072 90 aa9.96□□□□□ -0.82
USP54-215ENST00000497106 DZIP1Q86YF9 867 aaKnown RBP9.96□□□□□ -0.82
USP54-215ENST00000497106 SUPT20HQ8NEM7 779 aa9.96□□□□□ -0.82
USP54-215ENST00000497106 JAKMIP1Q96N16 626 aaKnown RBP9.96□□□□□ -0.82
USP54-215ENST00000497106 DOT1LQ8TEK3 1739 aa9.96□□□□□ -0.82
USP54-215ENST00000497106 TBC1D9BQ66K14 1250 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 CCDC125Q86Z20 511 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 APPBP2Q92624 585 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 ZNF287Q9HBT7 754 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 SRP68Q9UHB9 627 aaKnown RBP9.95□□□□□ -0.82
USP54-215ENST00000497106 GGA1Q9UJY5 639 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 PDCP20941 246 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 CHRNDQ07001 517 aa9.95□□□□□ -0.82
USP54-215ENST00000497106 GRAPQ13588 217 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms