RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 DPF2Q92785 391 aa16.26■□□□□ 0.19
PTPRF-214ENST00000496043 PSMD14O00487 310 aa16.25■□□□□ 0.19
PTPRF-214ENST00000496043 ECE2O60344 883 aa16.25■□□□□ 0.19
PTPRF-214ENST00000496043 UFL1O94874 794 aa16.25■□□□□ 0.19
PTPRF-214ENST00000496043 ATP2B4P23634 1241 aa16.25■□□□□ 0.19
PTPRF-214ENST00000496043 IFFO2Q5TF58 517 aa16.25■□□□□ 0.19
PTPRF-214ENST00000496043 BSDC1Q9NW68 430 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-214ENST00000496043 DEFB115Q30KQ5 88 aa16.24■□□□□ 0.19
PTPRF-214ENST00000496043 ZC3H15Q8WU90 426 aaKnown RBP16.24■□□□□ 0.19
PTPRF-214ENST00000496043 GPR101Q96P66 508 aaPredicted RBP16.24■□□□□ 0.19
PTPRF-214ENST00000496043 PLA2G12BQ9BX93 195 aa16.24■□□□□ 0.19
PTPRF-214ENST00000496043 GREM2Q9H772 168 aa16.24■□□□□ 0.19
PTPRF-214ENST00000496043 KCNQ5Q9NR82 932 aa16.24■□□□□ 0.19
PTPRF-214ENST00000496043 PGAP2Q9UHJ9 254 aa16.24■□□□□ 0.19
PTPRF-214ENST00000496043 ZBTB12Q9Y330 459 aaPredicted RBP16.24■□□□□ 0.19
PTPRF-214ENST00000496043 XDHP47989 1333 aa16.23■□□□□ 0.19
PTPRF-214ENST00000496043 RPS12P25398 132 aaKnown RBP16.23■□□□□ 0.19
PTPRF-214ENST00000496043 MICALL2Q8IY33 904 aa16.23■□□□□ 0.19
PTPRF-214ENST00000496043 MINPP1Q9UNW1 487 aa16.23■□□□□ 0.19
PTPRF-214ENST00000496043 CNTNAP1P78357 1384 aa16.23■□□□□ 0.19
PTPRF-214ENST00000496043 CSF1RP07333 972 aa16.22■□□□□ 0.19
PTPRF-214ENST00000496043 VIL1P09327 827 aaKnown RBP16.22■□□□□ 0.19
PTPRF-214ENST00000496043 HSPA1AP0DMV8 641 aaKnown RBP16.22■□□□□ 0.19
PTPRF-214ENST00000496043 HSPA1BP0DMV9 641 aaKnown RBP16.22■□□□□ 0.19
PTPRF-214ENST00000496043 IGHMBP2P38935 993 aaKnown RBP16.22■□□□□ 0.19
PTPRF-214ENST00000496043 VEGFBP49765 207 aa16.22■□□□□ 0.19
PTPRF-214ENST00000496043 HIRAP54198 1017 aaPredicted RBP16.22■□□□□ 0.19
PTPRF-214ENST00000496043 ABT1Q9ULW3 272 aaKnown RBP16.22■□□□□ 0.19
PTPRF-214ENST00000496043 LTBP1Q14766 1721 aa16.22■□□□□ 0.19
PTPRF-214ENST00000496043 ADAMTSL1Q8N6G6 1762 aa16.21■□□□□ 0.19
PTPRF-214ENST00000496043 RASSF10A6NK89 507 aa16.21■□□□□ 0.19
PTPRF-214ENST00000496043 F6X3S4 739 aa16.21■□□□□ 0.19
PTPRF-214ENST00000496043 CASP7P55210 303 aa16.21■□□□□ 0.19
PTPRF-214ENST00000496043 FMR1Q06787 632 aaKnown RBP eCLIP16.21■□□□□ 0.19
PTPRF-214ENST00000496043 BEND3Q5T5X7 828 aa16.21■□□□□ 0.19
PTPRF-214ENST00000496043 RTL9Q8NET4 1388 aa16.21■□□□□ 0.19
PTPRF-214ENST00000496043 DUOX1Q9NRD9 1551 aa16.21■□□□□ 0.18
PTPRF-214ENST00000496043 LRRC37AA6NMS7 1700 aa16.2■□□□□ 0.18
PTPRF-214ENST00000496043 SHTN1A0MZ66 631 aa16.2■□□□□ 0.18
PTPRF-214ENST00000496043 TRAF5O00463 557 aa16.2■□□□□ 0.18
PTPRF-214ENST00000496043 ITGA6P23229 1130 aa16.2■□□□□ 0.18
PTPRF-214ENST00000496043 CST9Q5W186 159 aa16.2■□□□□ 0.18
PTPRF-214ENST00000496043 CDC37L1Q7L3B6 337 aa16.2■□□□□ 0.18
PTPRF-214ENST00000496043 TRPM4Q8TD43 1214 aa16.2■□□□□ 0.18
PTPRF-214ENST00000496043 COL4A1P02462 1669 aa16.2■□□□□ 0.18
PTPRF-214ENST00000496043 ZNF521Q96K83 1311 aa16.19■□□□□ 0.18
PTPRF-214ENST00000496043 CCT4P50991 539 aaKnown RBP16.19■□□□□ 0.18
PTPRF-214ENST00000496043 RBM26Q5T8P6 1007 aaKnown RBP16.19■□□□□ 0.18
PTPRF-214ENST00000496043 SAMD7Q7Z3H4 446 aa16.19■□□□□ 0.18
PTPRF-214ENST00000496043 PODNQ7Z5L7 613 aa16.19■□□□□ 0.18
PTPRF-214ENST00000496043 MPHOSPH8Q99549 860 aa16.19■□□□□ 0.18
PTPRF-214ENST00000496043 GLIS2Q9BZE0 524 aaPredicted RBP16.19■□□□□ 0.18
PTPRF-214ENST00000496043 ANKRD2Q9GZV1 360 aa16.19■□□□□ 0.18
PTPRF-214ENST00000496043 LEMD3Q9Y2U8 911 aa16.19■□□□□ 0.18
PTPRF-214ENST00000496043 ANKRD18BA2A2Z9 1011 aa16.18■□□□□ 0.18
PTPRF-214ENST00000496043 TBC1D10BQ4KMP7 808 aaPredicted RBP16.18■□□□□ 0.18
PTPRF-214ENST00000496043 COL13A1Q5TAT6 717 aaPredicted RBP16.18■□□□□ 0.18
PTPRF-214ENST00000496043 AGBL3Q8NEM8 1001 aa16.18■□□□□ 0.18
PTPRF-214ENST00000496043 USP17L3A6NCW0 530 aa16.17■□□□□ 0.18
PTPRF-214ENST00000496043 USP17L4A6NCW7 530 aa16.17■□□□□ 0.18
PTPRF-214ENST00000496043 E9PSI1 815 aa16.17■□□□□ 0.18
PTPRF-214ENST00000496043 CELF2O95319 508 aaKnown RBP16.17■□□□□ 0.18
PTPRF-214ENST00000496043 RSBN1LQ6PCB5 846 aaPredicted RBP16.17■□□□□ 0.18
PTPRF-214ENST00000496043 USP17L1Q7RTZ2 530 aa16.17■□□□□ 0.18
PTPRF-214ENST00000496043 USP48Q86UV5 1035 aa16.17■□□□□ 0.18
PTPRF-214ENST00000496043 WDR33Q9C0J8 1336 aaKnown RBP16.17■□□□□ 0.18
PTPRF-214ENST00000496043 WTIPA6NIX2 430 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-214ENST00000496043 ALDH1L1O75891 902 aa16.16■□□□□ 0.18
PTPRF-214ENST00000496043 ECE1P42892 770 aa16.16■□□□□ 0.18
PTPRF-214ENST00000496043 FOXO4P98177 505 aa16.16■□□□□ 0.18
PTPRF-214ENST00000496043 IFIT5Q13325 482 aaKnown RBP16.16■□□□□ 0.18
PTPRF-214ENST00000496043 FAM161AQ3B820 660 aa16.16■□□□□ 0.18
PTPRF-214ENST00000496043 SLC4A10Q6U841 1118 aa16.16■□□□□ 0.18
PTPRF-214ENST00000496043 DCPSQ96C86 337 aaKnown RBP16.16■□□□□ 0.18
PTPRF-214ENST00000496043 C9orf78Q9NZ63 289 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-214ENST00000496043 TLL2Q9Y6L7 1015 aa16.16■□□□□ 0.18
PTPRF-214ENST00000496043 CACNA1FO60840 1977 aa16.16■□□□□ 0.18
PTPRF-214ENST00000496043 GRM8O00222 908 aa16.15■□□□□ 0.18
PTPRF-214ENST00000496043 PAXIP1Q6ZW49 1069 aaPredicted RBP16.15■□□□□ 0.18
PTPRF-214ENST00000496043 AIDAQ96BJ3 306 aa16.15■□□□□ 0.18
PTPRF-214ENST00000496043 SRCIN1Q9C0H9 1055 aa16.15■□□□□ 0.18
PTPRF-214ENST00000496043 COA1Q9GZY4 146 aa16.15■□□□□ 0.18
PTPRF-214ENST00000496043 CHMP3Q9Y3E7 222 aa16.15■□□□□ 0.18
PTPRF-214ENST00000496043 MED23Q9ULK4 1368 aa16.14■□□□□ 0.17
PTPRF-214ENST00000496043 KCNJ4P48050 445 aa16.14■□□□□ 0.17
PTPRF-214ENST00000496043 MAP2K1Q02750 393 aaPredicted RBP16.14■□□□□ 0.17
PTPRF-214ENST00000496043 SLFN5Q08AF3 891 aa16.14■□□□□ 0.17
PTPRF-214ENST00000496043 KIF4BQ2VIQ3 1234 aa16.14■□□□□ 0.17
PTPRF-214ENST00000496043 LMBR1LQ6UX01 489 aa16.14■□□□□ 0.17
PTPRF-214ENST00000496043 MRPL50Q8N5N7 158 aaKnown RBP16.14■□□□□ 0.17
PTPRF-214ENST00000496043 ZNF408Q9H9D4 720 aa16.14■□□□□ 0.17
PTPRF-214ENST00000496043 WBP1LQ9NX94 342 aa16.14■□□□□ 0.17
PTPRF-214ENST00000496043 ZNF804BA4D1E1 1349 aa16.14■□□□□ 0.17
PTPRF-214ENST00000496043 EGFRP00533 1210 aa16.13■□□□□ 0.17
PTPRF-214ENST00000496043 USP17L8P0C7I0 530 aa16.13■□□□□ 0.17
PTPRF-214ENST00000496043 ZNF280AP59817 542 aaPredicted RBP16.13■□□□□ 0.17
PTPRF-214ENST00000496043 CHRNDQ07001 517 aa16.13■□□□□ 0.17
PTPRF-214ENST00000496043 CCDC57Q2TAC2 916 aa16.13■□□□□ 0.17
PTPRF-214ENST00000496043 KRT26Q7Z3Y9 468 aa16.13■□□□□ 0.17
PTPRF-214ENST00000496043 SAPCD2Q86UD0 394 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms