RNA–Protein interactions for RNA: ENST00000494333.1

RIF1-211, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 743 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-211ENST00000494333 RNF20Q5VTR2 975 aa11.12□□□□□ -0.63
RIF1-211ENST00000494333 DDX54Q8TDD1 881 aaKnown RBP11.12□□□□□ -0.63
RIF1-211ENST00000494333 ACSBG1Q96GR2 724 aa11.12□□□□□ -0.63
RIF1-211ENST00000494333 BCL9O00512 1426 aa11.11□□□□□ -0.63
RIF1-211ENST00000494333 NSD3Q9BZ95 1437 aa11.11□□□□□ -0.63
RIF1-211ENST00000494333 LRRC37A3O60309 1634 aa11.11□□□□□ -0.63
RIF1-211ENST00000494333 PIK3CDO00329 1044 aa11.11□□□□□ -0.63
RIF1-211ENST00000494333 NBPF6Q5VWK0 638 aa11.11□□□□□ -0.63
RIF1-211ENST00000494333 RNF135Q8IUD6 432 aa11.11□□□□□ -0.63
RIF1-211ENST00000494333 NBPF4Q96M43 638 aa11.11□□□□□ -0.63
RIF1-211ENST00000494333 UCN2Q96RP3 112 aa11.11□□□□□ -0.63
RIF1-211ENST00000494333 CGNL1Q0VF96 1302 aa11.1□□□□□ -0.63
RIF1-211ENST00000494333 TNS1Q9HBL0 1735 aaKnown RBP11.1□□□□□ -0.63
RIF1-211ENST00000494333 ERVH48-1M5A8F1 160 aa11.1□□□□□ -0.63
RIF1-211ENST00000494333 PPM1GO15355 546 aaPredicted RBP11.1□□□□□ -0.63
RIF1-211ENST00000494333 DGAT1O75907 488 aa11.1□□□□□ -0.63
RIF1-211ENST00000494333 DHX9Q08211 1270 aaKnown RBP11.1□□□□□ -0.63
RIF1-211ENST00000494333 TSGA10IPQ3SY00 556 aa11.1□□□□□ -0.63
RIF1-211ENST00000494333 PPP1R26Q5T8A7 1209 aaPredicted RBP11.1□□□□□ -0.63
RIF1-211ENST00000494333 CCDC85AQ96PX6 553 aaPredicted RBP11.1□□□□□ -0.63
RIF1-211ENST00000494333 PANK3Q9H999 370 aa11.1□□□□□ -0.63
RIF1-211ENST00000494333 EMILIN1Q9Y6C2 1016 aa11.1□□□□□ -0.63
RIF1-211ENST00000494333 TNS2Q63HR2 1409 aa11.09□□□□□ -0.63
RIF1-211ENST00000494333 LTN1O94822 1766 aa11.09□□□□□ -0.63
RIF1-211ENST00000494333 RTL1A6NKG5 1358 aa11.09□□□□□ -0.63
RIF1-211ENST00000494333 TXNRD1Q16881 649 aa11.09□□□□□ -0.63
RIF1-211ENST00000494333 PKDCCQ504Y2 493 aa11.09□□□□□ -0.63
RIF1-211ENST00000494333 USHBP1Q8N6Y0 703 aa11.09□□□□□ -0.63
RIF1-211ENST00000494333 ZCRB1Q8TBF4 217 aaKnown RBP11.09□□□□□ -0.63
RIF1-211ENST00000494333 KLF16Q9BXK1 252 aaPredicted RBP11.09□□□□□ -0.63
RIF1-211ENST00000494333 C1orf115Q9H7X2 142 aa11.09□□□□□ -0.63
RIF1-211ENST00000494333 TMPRSS4Q9NRS4 437 aa11.09□□□□□ -0.63
RIF1-211ENST00000494333 PEAK1Q9H792 1746 aa11.08□□□□□ -0.64
RIF1-211ENST00000494333 INSRP06213 1382 aa11.07□□□□□ -0.64
RIF1-211ENST00000494333 FLT4P35916 1363 aa11.07□□□□□ -0.64
RIF1-211ENST00000494333 AVPP01185 164 aa11.07□□□□□ -0.64
RIF1-211ENST00000494333 TNNT2P45379 298 aaPredicted RBP11.07□□□□□ -0.64
RIF1-211ENST00000494333 WDR4P57081 412 aaKnown RBP11.07□□□□□ -0.64
RIF1-211ENST00000494333 TBC1D9Q6ZT07 1266 aa11.07□□□□□ -0.64
RIF1-211ENST00000494333 RAPGEF4Q8WZA2 1011 aa11.07□□□□□ -0.64
RIF1-211ENST00000494333 ITPKCQ96DU7 683 aa11.07□□□□□ -0.64
RIF1-211ENST00000494333 PCDHB11Q9Y5F2 797 aa11.07□□□□□ -0.64
RIF1-211ENST00000494333 SMG6Q86US8 1419 aaKnown RBP11.07□□□□□ -0.64
RIF1-211ENST00000494333 KIF24Q5T7B8 1368 aa11.06□□□□□ -0.64
RIF1-211ENST00000494333 SKIP12755 728 aa11.06□□□□□ -0.64
RIF1-211ENST00000494333 TIMP2P16035 220 aa11.06□□□□□ -0.64
RIF1-211ENST00000494333 TATP17735 454 aaPredicted RBP11.06□□□□□ -0.64
RIF1-211ENST00000494333 PLPP7Q8NBV4 271 aa11.06□□□□□ -0.64
RIF1-211ENST00000494333 SYTL4Q96C24 671 aaPredicted RBP11.06□□□□□ -0.64
RIF1-211ENST00000494333 ZFAND3Q9H8U3 227 aa11.06□□□□□ -0.64
RIF1-211ENST00000494333 PGPEP1Q9NXJ5 209 aa11.06□□□□□ -0.64
RIF1-211ENST00000494333 POLKQ9UBT6 870 aa11.06□□□□□ -0.64
RIF1-211ENST00000494333 SRCAPQ6ZRS2 3230 aa11.06□□□□□ -0.64
RIF1-211ENST00000494333 ZIC2O95409 532 aaPredicted RBP11.05□□□□□ -0.64
RIF1-211ENST00000494333 ZNF784Q8NCA9 323 aaPredicted RBP11.05□□□□□ -0.64
RIF1-211ENST00000494333 NFATC2IPQ8NCF5 419 aa11.05□□□□□ -0.64
RIF1-211ENST00000494333 WASHC2AQ641Q2 1341 aa11.05□□□□□ -0.64
RIF1-211ENST00000494333 TRAF7Q6Q0C0 670 aa11.04□□□□□ -0.64
RIF1-211ENST00000494333 STK32BQ9NY57 414 aa11.04□□□□□ -0.64
RIF1-211ENST00000494333 DOLKQ9UPQ8 538 aa11.04□□□□□ -0.64
RIF1-211ENST00000494333 KNSTRNQ9Y448 316 aa11.04□□□□□ -0.64
RIF1-211ENST00000494333 MYOM1P52179 1685 aa11.04□□□□□ -0.64
RIF1-211ENST00000494333 WNK3Q9BYP7 1800 aa11.03□□□□□ -0.64
RIF1-211ENST00000494333 ATP9BO43861 1147 aa11.03□□□□□ -0.64
RIF1-211ENST00000494333 SLC15A2Q16348 729 aa11.03□□□□□ -0.64
RIF1-211ENST00000494333 MAP7D1Q3KQU3 841 aa11.03□□□□□ -0.64
RIF1-211ENST00000494333 PPP1R12CQ9BZL4 782 aa11.03□□□□□ -0.64
RIF1-211ENST00000494333 SPON1Q9HCB6 807 aa11.03□□□□□ -0.64
RIF1-211ENST00000494333 CYLDQ9NQC7 956 aa11.03□□□□□ -0.64
RIF1-211ENST00000494333 TFIP11Q9UBB9 837 aaKnown RBP11.03□□□□□ -0.64
RIF1-211ENST00000494333 MEGF6O75095 1541 aa11.03□□□□□ -0.64
RIF1-211ENST00000494333 PALM3A6NDB9 673 aaPredicted RBP11.02□□□□□ -0.65
RIF1-211ENST00000494333 LILRA1O75019 489 aa11.02□□□□□ -0.65
RIF1-211ENST00000494333 MORC1Q86VD1 984 aa11.02□□□□□ -0.65
RIF1-211ENST00000494333 PDGFDQ9GZP0 370 aaPredicted RBP11.02□□□□□ -0.65
RIF1-211ENST00000494333 SBF2Q86WG5 1849 aa11.02□□□□□ -0.65
RIF1-211ENST00000494333 RREB1Q92766 1687 aa11.01□□□□□ -0.65
RIF1-211ENST00000494333 CAPN5O15484 640 aaPredicted RBP11.01□□□□□ -0.65
RIF1-211ENST00000494333 SCTRP47872 440 aa11.01□□□□□ -0.65
RIF1-211ENST00000494333 ERVK-9P63128 1117 aa11.01□□□□□ -0.65
RIF1-211ENST00000494333 OXLD1Q5BKU9 147 aa11.01□□□□□ -0.65
RIF1-211ENST00000494333 LRRC4BQ9NT99 713 aa11.01□□□□□ -0.65
RIF1-211ENST00000494333 KIF7Q2M1P5 1343 aa11.01□□□□□ -0.65
RIF1-211ENST00000494333 NUP188Q5SRE5 1749 aa11.01□□□□□ -0.65
RIF1-211ENST00000494333 USP17L5A8MUK1 530 aa11□□□□□ -0.65
RIF1-211ENST00000494333 CYP27B1O15528 508 aa11□□□□□ -0.65
RIF1-211ENST00000494333 ZBTB7AO95365 584 aa11□□□□□ -0.65
RIF1-211ENST00000494333 SMCPP49901 116 aaPredicted RBP11□□□□□ -0.65
RIF1-211ENST00000494333 KCNQ4P56696 695 aa11□□□□□ -0.65
RIF1-211ENST00000494333 CBLBQ13191 982 aa11□□□□□ -0.65
RIF1-211ENST00000494333 EIF4A2Q14240 407 aaKnown RBP11□□□□□ -0.65
RIF1-211ENST00000494333 CTC1Q2NKJ3 1217 aa11□□□□□ -0.65
RIF1-211ENST00000494333 CC2D2BQ6DHV5 1058 aa11□□□□□ -0.65
RIF1-211ENST00000494333 DEPDC4Q8N2C3 294 aa11□□□□□ -0.65
RIF1-211ENST00000494333 CCDC82Q8N4S0 544 aa11□□□□□ -0.65
RIF1-211ENST00000494333 CCDC97Q96F63 343 aaPredicted RBP11□□□□□ -0.65
RIF1-211ENST00000494333 PPP1R1BQ9UD71 204 aaPredicted RBP11□□□□□ -0.65
RIF1-211ENST00000494333 MAFBQ9Y5Q3 323 aaPredicted RBP11□□□□□ -0.65
RIF1-211ENST00000494333 PCDH11XQ9BZA7 1347 aa11□□□□□ -0.65
RIF1-211ENST00000494333 PCDH11YQ9BZA8 1340 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 302.6 ms