RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 CCDC173Q0VFZ6 552 aa16.46■□□□□ 0.22
VCP-207ENST00000493886 DDB1Q16531 1140 aa16.46■□□□□ 0.22
VCP-207ENST00000493886 KBTBD3Q8NAB2 608 aa16.46■□□□□ 0.22
VCP-207ENST00000493886 A0A1B0GUL7 405 aa16.45■□□□□ 0.22
VCP-207ENST00000493886 CSF1RP07333 972 aa16.45■□□□□ 0.22
VCP-207ENST00000493886 NLRP10Q86W26 655 aa16.45■□□□□ 0.22
VCP-207ENST00000493886 CEP126Q9P2H0 1117 aa16.45■□□□□ 0.22
VCP-207ENST00000493886 FBXO3Q9UK99 471 aa16.45■□□□□ 0.22
VCP-207ENST00000493886 RPAP1Q9BWH6 1393 aaPredicted RBP16.45■□□□□ 0.22
VCP-207ENST00000493886 CCDC85AQ96PX6 553 aaPredicted RBP16.45■□□□□ 0.22
VCP-207ENST00000493886 GDPD2Q9HCC8 539 aa16.45■□□□□ 0.22
VCP-207ENST00000493886 TMEM63CQ9P1W3 806 aa16.45■□□□□ 0.22
VCP-207ENST00000493886 CDHR2Q9BYE9 1310 aa16.44■□□□□ 0.22
VCP-207ENST00000493886 PSMA5P28066 241 aa16.44■□□□□ 0.22
VCP-207ENST00000493886 RNF214Q8ND24 703 aa16.44■□□□□ 0.22
VCP-207ENST00000493886 VGLL3A8MV65 326 aa16.44■□□□□ 0.22
VCP-207ENST00000493886 CHGBP05060 677 aa16.44■□□□□ 0.22
VCP-207ENST00000493886 SYNE4Q8N205 404 aa16.44■□□□□ 0.22
VCP-207ENST00000493886 PAG1Q9NWQ8 432 aa16.44■□□□□ 0.22
VCP-207ENST00000493886 GOLIM4O00461 696 aa16.43■□□□□ 0.22
VCP-207ENST00000493886 IL6STP40189 918 aaPredicted RBP16.43■□□□□ 0.22
VCP-207ENST00000493886 IFIT5Q13325 482 aaKnown RBP16.43■□□□□ 0.22
VCP-207ENST00000493886 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.43■□□□□ 0.22
VCP-207ENST00000493886 HMG20BQ9P0W2 317 aa16.43■□□□□ 0.22
VCP-207ENST00000493886 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.43■□□□□ 0.22
VCP-207ENST00000493886 PALLDQ8WX93 1383 aa16.43■□□□□ 0.22
VCP-207ENST00000493886 NUTM2BA6NNL0 878 aaPredicted RBP16.43■□□□□ 0.22
VCP-207ENST00000493886 NUTM2EB1AL46 878 aaPredicted RBP16.43■□□□□ 0.22
VCP-207ENST00000493886 LARGE1O95461 756 aa16.43■□□□□ 0.22
VCP-207ENST00000493886 MCMDC2Q4G0Z9 681 aa16.43■□□□□ 0.22
VCP-207ENST00000493886 NUTM2AQ8IVF1 878 aaPredicted RBP16.43■□□□□ 0.22
VCP-207ENST00000493886 ZSCAN31Q96LW9 406 aaPredicted RBP16.43■□□□□ 0.22
VCP-207ENST00000493886 SEC62Q99442 399 aaKnown RBP16.43■□□□□ 0.22
VCP-207ENST00000493886 ZNF445P59923 1031 aa16.42■□□□□ 0.22
VCP-207ENST00000493886 USPL1Q5W0Q7 1092 aa16.42■□□□□ 0.22
VCP-207ENST00000493886 ANKRD36CQ5JPF3 1778 aa16.42■□□□□ 0.22
VCP-207ENST00000493886 A0A0G2JS52 829 aa16.42■□□□□ 0.22
VCP-207ENST00000493886 IFIT1P09914 478 aaKnown RBP16.42■□□□□ 0.22
VCP-207ENST00000493886 CCDC129Q6ZRS4 1044 aa16.42■□□□□ 0.22
VCP-207ENST00000493886 DZIP3Q86Y13 1208 aaKnown RBP16.42■□□□□ 0.22
VCP-207ENST00000493886 SH2B1Q9NRF2 756 aaPredicted RBP16.42■□□□□ 0.22
VCP-207ENST00000493886 ERVV-1B6SEH8 477 aa16.42■□□□□ 0.22
VCP-207ENST00000493886 TSGA10IPQ3SY00 556 aa16.42■□□□□ 0.22
VCP-207ENST00000493886 TBC1D2BQ9UPU7 963 aa16.42■□□□□ 0.22
VCP-207ENST00000493886 AKAP2Q9Y2D5 859 aa16.42■□□□□ 0.22
VCP-207ENST00000493886 TAF6LQ9Y6J9 622 aa16.42■□□□□ 0.22
VCP-207ENST00000493886 SPATA31A5Q5VU36 1347 aa16.41■□□□□ 0.22
VCP-207ENST00000493886 SPATA31A7Q8IWB4 1347 aa16.41■□□□□ 0.22
VCP-207ENST00000493886 SH3TC1Q8TE82 1336 aa16.41■□□□□ 0.22
VCP-207ENST00000493886 WDR33Q9C0J8 1336 aaKnown RBP16.41■□□□□ 0.22
VCP-207ENST00000493886 BLOC1S2Q6QNY1 142 aa16.41■□□□□ 0.22
VCP-207ENST00000493886 ACSBG1Q96GR2 724 aa16.41■□□□□ 0.22
VCP-207ENST00000493886 NUP98P52948 1817 aa16.41■□□□□ 0.22
VCP-207ENST00000493886 MARCH10Q8NA82 808 aaPredicted RBP16.41■□□□□ 0.22
VCP-207ENST00000493886 TTLL11Q8NHH1 800 aa16.41■□□□□ 0.22
VCP-207ENST00000493886 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.41■□□□□ 0.22
VCP-207ENST00000493886 PPP1R9BQ96SB3 815 aa16.41■□□□□ 0.22
VCP-207ENST00000493886 SMC3Q9UQE7 1217 aa16.41■□□□□ 0.22
VCP-207ENST00000493886 COL9A3Q14050 684 aaPredicted RBP16.4■□□□□ 0.22
VCP-207ENST00000493886 TICAM2Q86XR7 235 aa16.4■□□□□ 0.22
VCP-207ENST00000493886 CCDC83Q8IWF9 413 aa16.4■□□□□ 0.22
VCP-207ENST00000493886 ZNF830Q96NB3 372 aaPredicted RBP16.4■□□□□ 0.22
VCP-207ENST00000493886 TRMT112Q9UI30 125 aaKnown RBP16.4■□□□□ 0.22
VCP-207ENST00000493886 IRS4O14654 1257 aaPredicted RBP16.4■□□□□ 0.22
VCP-207ENST00000493886 CTSWP56202 376 aa16.4■□□□□ 0.22
VCP-207ENST00000493886 U3KPZ7 1027 aaPredicted RBP16.4■□□□□ 0.22
VCP-207ENST00000493886 ITGA6P23229 1130 aa16.39■□□□□ 0.21
VCP-207ENST00000493886 RPS6KB1P23443 525 aa16.39■□□□□ 0.21
VCP-207ENST00000493886 MSNP26038 577 aaKnown RBP16.39■□□□□ 0.21
VCP-207ENST00000493886 PIP4K2BP78356 416 aa16.39■□□□□ 0.21
VCP-207ENST00000493886 XAGE2Q96GT9 111 aa16.39■□□□□ 0.21
VCP-207ENST00000493886 GREM2Q9H772 168 aa16.39■□□□□ 0.21
VCP-207ENST00000493886 HELLSQ9NRZ9 838 aa16.39■□□□□ 0.21
VCP-207ENST00000493886 ADORA1P30542 326 aa16.39■□□□□ 0.21
VCP-207ENST00000493886 ME3Q16798 604 aa16.39■□□□□ 0.21
VCP-207ENST00000493886 CCDC158Q5M9N0 1113 aa16.39■□□□□ 0.21
VCP-207ENST00000493886 KRT32Q14532 448 aa16.39■□□□□ 0.21
VCP-207ENST00000493886 GORABQ5T7V8 394 aa16.39■□□□□ 0.21
VCP-207ENST00000493886 ZSCAN30Q86W11 494 aa16.39■□□□□ 0.21
VCP-207ENST00000493886 ZHX1Q9UKY1 873 aaPredicted RBP16.39■□□□□ 0.21
VCP-207ENST00000493886 TPCN1Q9ULQ1 816 aa16.39■□□□□ 0.21
VCP-207ENST00000493886 TCHHQ07283 1943 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 SPEF2Q9C093 1822 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 ATP6V1AP38606 617 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 EIF5P55010 431 aaKnown RBP16.38■□□□□ 0.21
VCP-207ENST00000493886 SLFNL1Q499Z3 407 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 TTC39AQ5SRH9 613 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 ZMYM1Q5SVZ6 1142 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 BARGINQ6ZT62 677 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 ZNF34Q8IZ26 560 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 ALDH8A1Q9H2A2 487 aaPredicted RBP16.38■□□□□ 0.21
VCP-207ENST00000493886 UBN2Q6ZU65 1347 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 MYH3P11055 1940 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 ANKRD18BA2A2Z9 1011 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 ST3GAL1Q11201 340 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 ANKRD1Q15327 319 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 INTS5Q6P9B9 1019 aaKnown RBP16.38■□□□□ 0.21
VCP-207ENST00000493886 LDHAL6AQ6ZMR3 332 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 TCEANC2Q96MN5 208 aa16.38■□□□□ 0.21
VCP-207ENST00000493886 CCDC87Q9NVE4 849 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms