RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 TRAK1Q9UPV9 953 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 MARCH6O60337 910 aa6.65□□□□□ -1.35
VPS13A-212ENST00000493341 GRNP28799 593 aaKnown RBP6.65□□□□□ -1.35
VPS13A-212ENST00000493341 FAM160A1Q05DH4 1040 aa6.65□□□□□ -1.35
VPS13A-212ENST00000493341 GLIS3Q8NEA6 775 aa6.65□□□□□ -1.35
VPS13A-212ENST00000493341 SNIP1Q8TAD8 396 aaKnown RBP6.65□□□□□ -1.35
VPS13A-212ENST00000493341 MICAL1Q8TDZ2 1067 aa6.65□□□□□ -1.35
VPS13A-212ENST00000493341 ANAPC16Q96DE5 110 aa6.65□□□□□ -1.35
VPS13A-212ENST00000493341 HCSTQ9UBK5 93 aa6.65□□□□□ -1.35
VPS13A-212ENST00000493341 R3HCC1Q9Y3T6 440 aaKnown RBP6.65□□□□□ -1.35
VPS13A-212ENST00000493341 GJA3Q9Y6H8 435 aa6.65□□□□□ -1.35
VPS13A-212ENST00000493341 TTC24A2A3L6 582 aaPredicted RBP6.64□□□□□ -1.35
VPS13A-212ENST00000493341 CTSOP43234 321 aaPredicted RBP6.64□□□□□ -1.35
VPS13A-212ENST00000493341 ZNF697Q5TEC3 545 aa6.64□□□□□ -1.35
VPS13A-212ENST00000493341 SPRYD7Q5W111 196 aa6.64□□□□□ -1.35
VPS13A-212ENST00000493341 FBXL19Q6PCT2 694 aa6.64□□□□□ -1.35
VPS13A-212ENST00000493341 NLRP13Q86W25 1043 aa6.64□□□□□ -1.35
VPS13A-212ENST00000493341 MEIOBQ8N635 442 aa6.64□□□□□ -1.35
VPS13A-212ENST00000493341 KCNB2Q92953 911 aa6.64□□□□□ -1.35
VPS13A-212ENST00000493341 TSEN34Q9BSV6 310 aaKnown RBP6.64□□□□□ -1.35
VPS13A-212ENST00000493341 SIRPGQ9P1W8 387 aa6.64□□□□□ -1.35
VPS13A-212ENST00000493341 TLR6Q9Y2C9 796 aa6.64□□□□□ -1.35
VPS13A-212ENST00000493341 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.64□□□□□ -1.35
VPS13A-212ENST00000493341 CYP2E1P05181 493 aaPredicted RBP6.64□□□□□ -1.35
VPS13A-212ENST00000493341 TYRO3Q06418 890 aa6.64□□□□□ -1.35
VPS13A-212ENST00000493341 KIAA0319Q5VV43 1072 aa6.64□□□□□ -1.35
VPS13A-212ENST00000493341 DTHD1Q6ZMT9 781 aa6.64□□□□□ -1.35
VPS13A-212ENST00000493341 HNRNPLLQ8WVV9 542 aaKnown RBP6.64□□□□□ -1.35
VPS13A-212ENST00000493341 MKL1Q969V6 931 aa6.64□□□□□ -1.35
VPS13A-212ENST00000493341 OXCT2Q9BYC2 517 aaPredicted RBP6.64□□□□□ -1.35
VPS13A-212ENST00000493341 A0A1W2PP55 124 aa6.63□□□□□ -1.35
VPS13A-212ENST00000493341 SPATA31C2B4DYI2 1134 aa6.63□□□□□ -1.35
VPS13A-212ENST00000493341 EDN3P14138 238 aa6.63□□□□□ -1.35
VPS13A-212ENST00000493341 ANAPC15P60006 121 aa6.63□□□□□ -1.35
VPS13A-212ENST00000493341 MAP3K10Q02779 954 aa6.63□□□□□ -1.35
VPS13A-212ENST00000493341 RAB33AQ14088 237 aa6.63□□□□□ -1.35
VPS13A-212ENST00000493341 NOL8Q76FK4 1167 aaKnown RBP6.63□□□□□ -1.35
VPS13A-212ENST00000493341 UBP1Q9NZI7 540 aa6.63□□□□□ -1.35
VPS13A-212ENST00000493341 A0A1W2PNR3 127 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 POTECB2RU33 542 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 RLBP1P12271 317 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 CHMP4BP1P59074 171 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 CTC1Q2NKJ3 1217 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 PEAR1Q5VY43 1037 aaPredicted RBP6.62□□□□□ -1.35
VPS13A-212ENST00000493341 TPTE2Q6XPS3 522 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 FILIP1Q7Z7B0 1213 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 RNPC3Q96LT9 517 aaKnown RBP6.62□□□□□ -1.35
VPS13A-212ENST00000493341 STRIP2Q9ULQ0 834 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 SUPT16HQ9Y5B9 1047 aaKnown RBP6.62□□□□□ -1.35
VPS13A-212ENST00000493341 SPINT1O43278 529 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 KLF4O43474 513 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 SASH3O75995 380 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 SOX9P48436 509 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 KRT25Q7Z3Z0 450 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 GOLM1Q8NBJ4 401 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 DEPDC7Q96QD5 511 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 NT5C1AQ9BXI3 368 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 BRD7Q9NPI1 651 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 SNTG2Q9NY99 539 aa6.62□□□□□ -1.35
VPS13A-212ENST00000493341 NOP58Q9Y2X3 529 aaKnown RBP6.62□□□□□ -1.35
VPS13A-212ENST00000493341 UPP2O95045 317 aa6.61□□□□□ -1.35
VPS13A-212ENST00000493341 EGFRP00533 1210 aa6.61□□□□□ -1.35
VPS13A-212ENST00000493341 MSX1P28360 303 aa6.61□□□□□ -1.35
VPS13A-212ENST00000493341 VEGFBP49765 207 aa6.61□□□□□ -1.35
VPS13A-212ENST00000493341 APOBRQ0VD83 1088 aa6.61□□□□□ -1.35
VPS13A-212ENST00000493341 ZCRB1Q8TBF4 217 aaKnown RBP6.61□□□□□ -1.35
VPS13A-212ENST00000493341 LIN7BQ9HAP6 207 aa6.61□□□□□ -1.35
VPS13A-212ENST00000493341 TIMMDC1Q9NPL8 285 aa6.61□□□□□ -1.35
VPS13A-212ENST00000493341 PKD2L1Q9P0L9 805 aa6.61□□□□□ -1.35
VPS13A-212ENST00000493341 PPM1HQ9ULR3 514 aa6.61□□□□□ -1.35
VPS13A-212ENST00000493341 A0A1B0GTH6 734 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 FAM221BA6H8Z2 402 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 PHF20L1A8MW92 1017 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 PF4P02776 101 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 CCDC81Q6ZN84 652 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 ZNF598Q86UK7 904 aaKnown RBP6.6□□□□□ -1.35
VPS13A-212ENST00000493341 PHC3Q8NDX5 983 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 ZCCHC2Q9C0B9 1178 aaKnown RBP6.6□□□□□ -1.35
VPS13A-212ENST00000493341 ABCB6Q9NP58 842 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 IFT57Q9NWB7 429 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 TMEM238LA0A1B0GVL6 79 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 ENPP3O14638 875 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 RHOQP17081 205 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 TARSP26639 723 aaKnown RBP6.6□□□□□ -1.35
VPS13A-212ENST00000493341 COL9A2Q14055 689 aaPredicted RBP6.6□□□□□ -1.35
VPS13A-212ENST00000493341 SNAP47Q5SQN1 464 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 SV2BQ7L1I2 683 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 LYSMD3Q7Z3D4 306 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 CYP4X1Q8N118 509 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 LINC00528Q8N1L1 170 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 RHOVQ96L33 236 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 GPAMQ9HCL2 828 aa6.6□□□□□ -1.35
VPS13A-212ENST00000493341 LIG3P49916 1009 aa6.59□□□□□ -1.35
VPS13A-212ENST00000493341 SRRTQ9BXP5 876 aaKnown RBP6.59□□□□□ -1.35
VPS13A-212ENST00000493341 PRKAG3Q9UGI9 489 aa6.59□□□□□ -1.35
VPS13A-212ENST00000493341 SALL4Q9UJQ4 1053 aa6.59□□□□□ -1.35
VPS13A-212ENST00000493341 COL4A3BPQ9Y5P4 624 aa6.59□□□□□ -1.35
VPS13A-212ENST00000493341 GREM1O60565 184 aa6.59□□□□□ -1.36
VPS13A-212ENST00000493341 CELA3AP09093 270 aa6.59□□□□□ -1.36
VPS13A-212ENST00000493341 BMP2P12643 396 aa6.59□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms