RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 UPF1Q92900 1129 aaKnown RBP eCLIP8.6□□□□□ -1.03
SYNE1-229ENST00000490866 STK32BQ9NY57 414 aa8.6□□□□□ -1.03
SYNE1-229ENST00000490866 NIP7Q9Y221 180 aaKnown RBP eCLIP8.6□□□□□ -1.03
SYNE1-229ENST00000490866 KDM2BQ8NHM5 1336 aa8.59□□□□□ -1.03
SYNE1-229ENST00000490866 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.59□□□□□ -1.03
SYNE1-229ENST00000490866 ATP5J2-PTCD1G3V325 749 aa8.59□□□□□ -1.03
SYNE1-229ENST00000490866 CSF1RP07333 972 aa8.59□□□□□ -1.03
SYNE1-229ENST00000490866 NUCB1Q02818 461 aa8.59□□□□□ -1.03
SYNE1-229ENST00000490866 CWF19L2Q2TBE0 894 aaKnown RBP8.59□□□□□ -1.03
SYNE1-229ENST00000490866 PPP4R3BQ5MIZ7 849 aa8.59□□□□□ -1.03
SYNE1-229ENST00000490866 KIF1BPQ96EK5 621 aa8.59□□□□□ -1.03
SYNE1-229ENST00000490866 NLRP3Q96P20 1036 aa8.59□□□□□ -1.03
SYNE1-229ENST00000490866 CAMKK2Q96RR4 588 aa8.59□□□□□ -1.03
SYNE1-229ENST00000490866 KRTAP3-3Q9BYR6 98 aa8.59□□□□□ -1.03
SYNE1-229ENST00000490866 KRTAP3-2Q9BYR7 98 aa8.59□□□□□ -1.03
SYNE1-229ENST00000490866 LRRCC1Q9C099 1032 aa8.59□□□□□ -1.03
SYNE1-229ENST00000490866 COPRSQ9NQ92 184 aa8.59□□□□□ -1.03
SYNE1-229ENST00000490866 LRRFIP2Q9Y608 721 aaKnown RBP8.59□□□□□ -1.03
SYNE1-229ENST00000490866 COL5A3P25940 1745 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-229ENST00000490866 TJP1Q07157 1748 aa8.59□□□□□ -1.03
SYNE1-229ENST00000490866 USP42Q9H9J4 1324 aaKnown RBP8.58□□□□□ -1.04
SYNE1-229ENST00000490866 NPHP1O15259 732 aa8.58□□□□□ -1.04
SYNE1-229ENST00000490866 EVI5O60447 810 aa8.58□□□□□ -1.04
SYNE1-229ENST00000490866 SURF6O75683 361 aaKnown RBP8.58□□□□□ -1.04
SYNE1-229ENST00000490866 CIAO1O76071 339 aa8.58□□□□□ -1.04
SYNE1-229ENST00000490866 IFIT5Q13325 482 aaKnown RBP8.58□□□□□ -1.04
SYNE1-229ENST00000490866 CCDC152Q4G0S7 254 aa8.58□□□□□ -1.04
SYNE1-229ENST00000490866 UBE3BQ7Z3V4 1068 aa8.58□□□□□ -1.04
SYNE1-229ENST00000490866 CHD1LQ86WJ1 897 aa8.58□□□□□ -1.04
SYNE1-229ENST00000490866 CLASRPQ8N2M8 674 aaKnown RBP8.58□□□□□ -1.04
SYNE1-229ENST00000490866 EMILIN3Q9NT22 766 aa8.58□□□□□ -1.04
SYNE1-229ENST00000490866 LRRC4BQ9NT99 713 aa8.58□□□□□ -1.04
SYNE1-229ENST00000490866 AKAP2Q9Y2D5 859 aa8.58□□□□□ -1.04
SYNE1-229ENST00000490866 ARIH1Q9Y4X5 557 aaPredicted RBP8.58□□□□□ -1.04
SYNE1-229ENST00000490866 ANKRD18BA2A2Z9 1011 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 IRS4O14654 1257 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-229ENST00000490866 IGSF3O75054 1194 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 IGHDP01880 384 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 IL15P40933 162 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-229ENST00000490866 CASP7P55210 303 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 ST5P78524 1137 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 SF3B3Q15393 1217 aaKnown RBP8.57□□□□□ -1.04
SYNE1-229ENST00000490866 E2F4Q16254 413 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 SLC15A2Q16348 729 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 HLFQ16534 295 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 ANKRD45Q5TZF3 282 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 USPL1Q5W0Q7 1092 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 TMC4Q7Z404 712 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 NBPF5PQ86XG9 351 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-229ENST00000490866 GPATCH3Q96I76 525 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 CDC5LQ99459 802 aaKnown RBP8.57□□□□□ -1.04
SYNE1-229ENST00000490866 GPR108Q9NPR9 543 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 TNNQ9UQP3 1299 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 CARMIL3Q8ND23 1372 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 MYH14Q7Z406 1995 aaKnown RBP8.57□□□□□ -1.04
SYNE1-229ENST00000490866 C4BP0C0L5 1744 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 NUP98P52948 1817 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 TAF1LQ8IZX4 1826 aa8.57□□□□□ -1.04
SYNE1-229ENST00000490866 ARFGEF2Q9Y6D5 1785 aa8.56□□□□□ -1.04
SYNE1-229ENST00000490866 EP400Q96L91 3159 aa8.56□□□□□ -1.04
SYNE1-229ENST00000490866 PIP4K2AP48426 406 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-229ENST00000490866 PLCB2Q00722 1185 aa8.56□□□□□ -1.04
SYNE1-229ENST00000490866 OS9Q13438 667 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-229ENST00000490866 GRIPAP1Q4V328 841 aa8.56□□□□□ -1.04
SYNE1-229ENST00000490866 TAF7LQ5H9L4 462 aa8.56□□□□□ -1.04
SYNE1-229ENST00000490866 PTF1AQ7RTS3 328 aa8.56□□□□□ -1.04
SYNE1-229ENST00000490866 TMX4Q9H1E5 349 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-229ENST00000490866 BICC1Q9H694 974 aaKnown RBP8.56□□□□□ -1.04
SYNE1-229ENST00000490866 RTL9Q8NET4 1388 aa8.56□□□□□ -1.04
SYNE1-229ENST00000490866 ARHGAP33O14559 1287 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 ERC2O15083 957 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 TM4SF1P30408 202 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 IGHMBP2P38935 993 aaKnown RBP8.55□□□□□ -1.04
SYNE1-229ENST00000490866 PTGER2P43116 358 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 FOXO4P98177 505 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 SUSD4Q5VX71 490 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 LMBR1LQ6UX01 489 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 SPNS2Q8IVW8 549 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 SIRT2Q8IXJ6 389 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 IL27Q8NEV9 243 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 TTLL11Q8NHH1 800 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 FAM89AQ96GI7 184 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 MPHOSPH8Q99549 860 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 OSBPL3Q9H4L5 887 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 PARP3Q9Y6F1 533 aa8.55□□□□□ -1.04
SYNE1-229ENST00000490866 AOX1Q06278 1338 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 MROH5Q6ZUA9 1318 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 NUP188Q5SRE5 1749 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 SPDYE16A6NNV3 312 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-229ENST00000490866 BBOX1O75936 387 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 GYS1P13807 737 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 GPTP24298 496 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 PDE6BP35913 854 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 CTSWP56202 376 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 EN1Q05925 392 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-229ENST00000490866 LRRFIP1Q32MZ4 808 aaKnown RBP8.54□□□□□ -1.04
SYNE1-229ENST00000490866 CASC1Q6TDU7 716 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 CNBD1Q8NA66 436 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 SUCLG2Q96I99 432 aa8.54□□□□□ -1.04
SYNE1-229ENST00000490866 BRIP1Q9BX63 1249 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms