RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FGD1P98174 961 aa21.25■□□□□ 0.99
VIM-206ENST00000487938 MAP3K11Q16584 847 aa21.25■□□□□ 0.99
VIM-206ENST00000487938 DNTTIP2Q5QJE6 756 aaKnown RBP21.25■□□□□ 0.99
VIM-206ENST00000487938 STOX1Q6ZVD7 989 aa21.25■□□□□ 0.99
VIM-206ENST00000487938 LEO1Q8WVC0 666 aaPredicted RBP21.25■□□□□ 0.99
VIM-206ENST00000487938 ZNF594Q96JF6 807 aaPredicted RBP21.25■□□□□ 0.99
VIM-206ENST00000487938 ARFGEF2Q9Y6D5 1785 aa21.25■□□□□ 0.99
VIM-206ENST00000487938 SPATA31A3Q5VYP0 1347 aa21.25■□□□□ 0.99
VIM-206ENST00000487938 ZBTB3Q9H5J0 574 aa21.24■□□□□ 0.99
VIM-206ENST00000487938 FOSBP53539 338 aa21.24■□□□□ 0.99
VIM-206ENST00000487938 SCRN1Q12765 414 aa21.24■□□□□ 0.99
VIM-206ENST00000487938 LRRC24Q50LG9 513 aa21.24■□□□□ 0.99
VIM-206ENST00000487938 SPC24Q8NBT2 197 aa21.24■□□□□ 0.99
VIM-206ENST00000487938 TNMDQ9H2S6 317 aa21.24■□□□□ 0.99
VIM-206ENST00000487938 PAG1Q9NWQ8 432 aa21.24■□□□□ 0.99
VIM-206ENST00000487938 CWC25Q9NXE8 425 aaPredicted RBP21.24■□□□□ 0.99
VIM-206ENST00000487938 A0A0G2JLW4 131 aa21.23■□□□□ 0.99
VIM-206ENST00000487938 H3BQV1 296 aa21.23■□□□□ 0.99
VIM-206ENST00000487938 IFFO2Q5TF58 517 aa21.23■□□□□ 0.99
VIM-206ENST00000487938 MRVI1Q9Y6F6 885 aa21.23■□□□□ 0.99
VIM-206ENST00000487938 TYRO3Q06418 890 aa21.22■□□□□ 0.99
VIM-206ENST00000487938 NOLC1Q14978 699 aaKnown RBP eCLIP21.22■□□□□ 0.99
VIM-206ENST00000487938 PIBF1Q8WXW3 757 aa21.22■□□□□ 0.99
VIM-206ENST00000487938 PGBD1Q96JS3 809 aa21.22■□□□□ 0.99
VIM-206ENST00000487938 FAM13BQ9NYF5 915 aa21.22■□□□□ 0.99
VIM-206ENST00000487938 SASS6Q6UVJ0 657 aa21.22■□□□□ 0.99
VIM-206ENST00000487938 LUZP1Q86V48 1076 aa21.21■□□□□ 0.99
VIM-206ENST00000487938 RFX7Q2KHR2 1363 aa21.21■□□□□ 0.99
VIM-206ENST00000487938 ABCC6O95255 1503 aa21.21■□□□□ 0.99
VIM-206ENST00000487938 PPFIA3O75145 1194 aa21.21■□□□□ 0.99
VIM-206ENST00000487938 NR1I2O75469 434 aa21.21■□□□□ 0.99
VIM-206ENST00000487938 CEBPZQ03701 1054 aaKnown RBP21.21■□□□□ 0.99
VIM-206ENST00000487938 RESTQ13127 1097 aa21.21■□□□□ 0.99
VIM-206ENST00000487938 APOBRQ0VD83 1088 aa21.2■□□□□ 0.98
VIM-206ENST00000487938 KLHL34Q8N239 644 aa21.2■□□□□ 0.98
VIM-206ENST00000487938 BICD2Q8TD16 824 aa21.2■□□□□ 0.98
VIM-206ENST00000487938 SH3TC1Q8TE82 1336 aa21.2■□□□□ 0.98
VIM-206ENST00000487938 CPDO75976 1380 aa21.2■□□□□ 0.98
VIM-206ENST00000487938 PLEKHG2Q9H7P9 1386 aa21.2■□□□□ 0.98
VIM-206ENST00000487938 DHX32Q7L7V1 743 aaKnown RBP21.2■□□□□ 0.98
VIM-206ENST00000487938 FAM200AQ8TCP9 573 aa21.2■□□□□ 0.98
VIM-206ENST00000487938 PUS3Q9BZE2 481 aaKnown RBP21.2■□□□□ 0.98
VIM-206ENST00000487938 CCT2P78371 535 aaKnown RBP21.19■□□□□ 0.98
VIM-206ENST00000487938 ANO6Q4KMQ2 910 aa21.19■□□□□ 0.98
VIM-206ENST00000487938 TOM1L2Q6ZVM7 507 aa21.19■□□□□ 0.98
VIM-206ENST00000487938 CHST3Q7LGC8 479 aa21.19■□□□□ 0.98
VIM-206ENST00000487938 ZCRB1Q8TBF4 217 aaKnown RBP21.19■□□□□ 0.98
VIM-206ENST00000487938 HELLSQ9NRZ9 838 aa21.19■□□□□ 0.98
VIM-206ENST00000487938 NAP1L2Q9ULW6 460 aaPredicted RBP21.19■□□□□ 0.98
VIM-206ENST00000487938 IL15P40933 162 aaPredicted RBP21.18■□□□□ 0.98
VIM-206ENST00000487938 IFIT1P09914 478 aaKnown RBP21.18■□□□□ 0.98
VIM-206ENST00000487938 ZMYM1Q5SVZ6 1142 aa21.18■□□□□ 0.98
VIM-206ENST00000487938 PDCL3Q9H2J4 239 aa21.18■□□□□ 0.98
VIM-206ENST00000487938 EYA2O00167 538 aa21.17■□□□□ 0.98
VIM-206ENST00000487938 PFKFB2O60825 505 aa21.17■□□□□ 0.98
VIM-206ENST00000487938 HSPD1P10809 573 aaKnown RBP21.17■□□□□ 0.98
VIM-206ENST00000487938 BRINP3Q76B58 766 aa21.17■□□□□ 0.98
VIM-206ENST00000487938 KCNF1Q9H3M0 494 aa21.17■□□□□ 0.98
VIM-206ENST00000487938 CLSTN2Q9H4D0 955 aa21.17■□□□□ 0.98
VIM-206ENST00000487938 PALLDQ8WX93 1383 aa21.17■□□□□ 0.98
VIM-206ENST00000487938 A0A1B0GUL7 405 aa21.17■□□□□ 0.98
VIM-206ENST00000487938 CTDNEP1O95476 244 aa21.17■□□□□ 0.98
VIM-206ENST00000487938 NSUN7Q8NE18 718 aaKnown RBP21.17■□□□□ 0.98
VIM-206ENST00000487938 SMARCC2Q8TAQ2 1214 aa21.17■□□□□ 0.98
VIM-206ENST00000487938 CBX8Q9HC52 389 aa21.17■□□□□ 0.98
VIM-206ENST00000487938 DDX19AQ9NUU7 478 aaKnown RBP21.17■□□□□ 0.98
VIM-206ENST00000487938 PKD1L3Q7Z443 1732 aa21.17■□□□□ 0.98
VIM-206ENST00000487938 E7EWF7 191 aa21.16■□□□□ 0.98
VIM-206ENST00000487938 HMGB1P09429 215 aaKnown RBP21.16■□□□□ 0.98
VIM-206ENST00000487938 DSCC1Q9BVC3 393 aa21.16■□□□□ 0.98
VIM-206ENST00000487938 NCOA5Q9HCD5 579 aaKnown RBP21.16■□□□□ 0.98
VIM-206ENST00000487938 ZNF330Q9Y3S2 320 aaPredicted RBP21.16■□□□□ 0.98
VIM-206ENST00000487938 GLI3P10071 1580 aa21.16■□□□□ 0.98
VIM-206ENST00000487938 EXOSC10Q01780 885 aaKnown RBP21.16■□□□□ 0.98
VIM-206ENST00000487938 TTLL5Q6EMB2 1281 aa21.16■□□□□ 0.98
VIM-206ENST00000487938 ZSCAN16Q9H4T2 348 aaPredicted RBP21.16■□□□□ 0.98
VIM-206ENST00000487938 GPR108Q9NPR9 543 aa21.16■□□□□ 0.98
VIM-206ENST00000487938 FKBP4Q02790 459 aaKnown RBP eCLIP21.15■□□□□ 0.98
VIM-206ENST00000487938 CCDC191Q8NCU4 936 aa21.15■□□□□ 0.98
VIM-206ENST00000487938 CCDC85AQ96PX6 553 aaPredicted RBP21.15■□□□□ 0.98
VIM-206ENST00000487938 FTOQ9C0B1 505 aaKnown RBP eCLIP21.15■□□□□ 0.98
VIM-206ENST00000487938 PRDM11Q9NQV5 511 aa21.15■□□□□ 0.98
VIM-206ENST00000487938 PYCARDQ9ULZ3 195 aa21.15■□□□□ 0.98
VIM-206ENST00000487938 MAST3O60307 1309 aa21.15■□□□□ 0.98
VIM-206ENST00000487938 PCDH11XQ9BZA7 1347 aa21.15■□□□□ 0.98
VIM-206ENST00000487938 PCDH11YQ9BZA8 1340 aa21.15■□□□□ 0.98
VIM-206ENST00000487938 PTPDC1A2A3K4 754 aa21.15■□□□□ 0.98
VIM-206ENST00000487938 RNF113AO15541 343 aaKnown RBP21.15■□□□□ 0.98
VIM-206ENST00000487938 M0R2C6 588 aa21.14■□□□□ 0.97
VIM-206ENST00000487938 LLPHQ9BRT6 129 aaKnown RBP21.14■□□□□ 0.97
VIM-206ENST00000487938 CFAP45Q9UL16 551 aa21.14■□□□□ 0.97
VIM-206ENST00000487938 ERVV-2B6SEH9 535 aa21.13■□□□□ 0.97
VIM-206ENST00000487938 DYNC1I1O14576 645 aa21.13■□□□□ 0.97
VIM-206ENST00000487938 GUCY1B3Q02153 619 aa21.13■□□□□ 0.97
VIM-206ENST00000487938 LAMA4Q16363 1823 aa21.13■□□□□ 0.97
VIM-206ENST00000487938 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.13■□□□□ 0.97
VIM-206ENST00000487938 ADD1P35611 737 aaKnown RBP21.13■□□□□ 0.97
VIM-206ENST00000487938 RBM43Q6ZSC3 357 aaKnown RBP21.13■□□□□ 0.97
VIM-206ENST00000487938 LAMB4A4D0S4 1761 aa21.13■□□□□ 0.97
VIM-206ENST00000487938 OSBP2Q969R2 916 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms