RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 HSP90AB1P08238 724 aaKnown RBP9.19□□□□□ -0.94
HDAC3-209ENST00000486618 FDX1P10109 184 aa9.19□□□□□ -0.94
HDAC3-209ENST00000486618 MS4A1P11836 297 aa9.19□□□□□ -0.94
HDAC3-209ENST00000486618 PRELPP51888 382 aa9.19□□□□□ -0.94
HDAC3-209ENST00000486618 HTRA3P83110 453 aa9.19□□□□□ -0.94
HDAC3-209ENST00000486618 DCAF5Q96JK2 942 aa9.19□□□□□ -0.94
HDAC3-209ENST00000486618 SLC24A3Q9HC58 644 aa9.19□□□□□ -0.94
HDAC3-209ENST00000486618 RNF181Q9P0P0 153 aa9.19□□□□□ -0.94
HDAC3-209ENST00000486618 PCDHGC3Q9UN70 934 aa9.19□□□□□ -0.94
HDAC3-209ENST00000486618 CNTNAP4Q9C0A0 1308 aa9.19□□□□□ -0.94
HDAC3-209ENST00000486618 TNFRSF10AO00220 468 aa9.18□□□□□ -0.94
HDAC3-209ENST00000486618 KCNA3P22001 575 aa9.18□□□□□ -0.94
HDAC3-209ENST00000486618 ZNF831Q5JPB2 1677 aa9.18□□□□□ -0.94
HDAC3-209ENST00000486618 KCTD17Q8N5Z5 321 aa9.18□□□□□ -0.94
HDAC3-209ENST00000486618 SBF1O95248 1867 aa9.17□□□□□ -0.94
HDAC3-209ENST00000486618 KCPQ6ZWJ8 1503 aa9.17□□□□□ -0.94
HDAC3-209ENST00000486618 KDRP35968 1356 aa9.17□□□□□ -0.94
HDAC3-209ENST00000486618 ZC3H4Q9UPT8 1303 aaKnown RBP9.17□□□□□ -0.94
HDAC3-209ENST00000486618 MOXD2PA6NHM9 499 aa9.17□□□□□ -0.94
HDAC3-209ENST00000486618 NDUFV2P19404 249 aa9.17□□□□□ -0.94
HDAC3-209ENST00000486618 TRAF7Q6Q0C0 670 aa9.17□□□□□ -0.94
HDAC3-209ENST00000486618 TNRC6CQ9HCJ0 1690 aaKnown RBP9.16□□□□□ -0.94
HDAC3-209ENST00000486618 MYH14Q7Z406 1995 aaKnown RBP9.16□□□□□ -0.94
HDAC3-209ENST00000486618 VEGFAP15692 232 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-209ENST00000486618 CABP4P57796 275 aa9.16□□□□□ -0.94
HDAC3-209ENST00000486618 PDE4DQ08499 809 aa9.16□□□□□ -0.94
HDAC3-209ENST00000486618 PLEKHO1Q53GL0 409 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-209ENST00000486618 RETREG3Q86VR2 466 aa9.16□□□□□ -0.94
HDAC3-209ENST00000486618 SLC4A9Q96Q91 983 aa9.16□□□□□ -0.94
HDAC3-209ENST00000486618 PKD2L1Q9P0L9 805 aa9.16□□□□□ -0.94
HDAC3-209ENST00000486618 COL5A3P25940 1745 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-209ENST00000486618 CD2BP2O95400 341 aaKnown RBP9.15□□□□□ -0.94
HDAC3-209ENST00000486618 JUNDP17535 347 aa9.15□□□□□ -0.94
HDAC3-209ENST00000486618 AMOTQ4VCS5 1084 aa9.15□□□□□ -0.94
HDAC3-209ENST00000486618 CARD14Q9BXL6 1004 aa9.15□□□□□ -0.94
HDAC3-209ENST00000486618 ANKRD26Q9UPS8 1709 aa9.14□□□□□ -0.95
HDAC3-209ENST00000486618 USP42Q9H9J4 1324 aaKnown RBP9.14□□□□□ -0.95
HDAC3-209ENST00000486618 C6orf229H3BNL8 230 aa9.14□□□□□ -0.95
HDAC3-209ENST00000486618 ZBTB24O43167 697 aaPredicted RBP9.14□□□□□ -0.95
HDAC3-209ENST00000486618 PTCD1O75127 700 aaKnown RBP9.14□□□□□ -0.95
HDAC3-209ENST00000486618 CLSTN1O94985 981 aa9.14□□□□□ -0.95
HDAC3-209ENST00000486618 HSPA1AP0DMV8 641 aaKnown RBP9.14□□□□□ -0.95
HDAC3-209ENST00000486618 HSPA1BP0DMV9 641 aaKnown RBP9.14□□□□□ -0.95
HDAC3-209ENST00000486618 LMNB1P20700 586 aa9.14□□□□□ -0.95
HDAC3-209ENST00000486618 CHRNA5P30532 468 aa9.14□□□□□ -0.95
HDAC3-209ENST00000486618 CRKLP46109 303 aaKnown RBP9.14□□□□□ -0.95
HDAC3-209ENST00000486618 FOXC1Q12948 553 aa9.14□□□□□ -0.95
HDAC3-209ENST00000486618 TBC1D2Q9BYX2 928 aa9.14□□□□□ -0.95
HDAC3-209ENST00000486618 POLKQ9UBT6 870 aa9.14□□□□□ -0.95
HDAC3-209ENST00000486618 GLTPD2A6NH11 291 aa9.13□□□□□ -0.95
HDAC3-209ENST00000486618 MTHFSP49914 203 aa9.13□□□□□ -0.95
HDAC3-209ENST00000486618 DDR1Q08345 913 aa9.13□□□□□ -0.95
HDAC3-209ENST00000486618 EIF4A2Q14240 407 aaKnown RBP9.13□□□□□ -0.95
HDAC3-209ENST00000486618 C1orf141Q5JVX7 400 aa9.13□□□□□ -0.95
HDAC3-209ENST00000486618 ZNF530Q6P9A1 599 aaPredicted RBP9.13□□□□□ -0.95
HDAC3-209ENST00000486618 SRP68Q9UHB9 627 aaKnown RBP9.13□□□□□ -0.95
HDAC3-209ENST00000486618 POLRMTO00411 1230 aaKnown RBP9.12□□□□□ -0.95
HDAC3-209ENST00000486618 TM4SF1P30408 202 aa9.12□□□□□ -0.95
HDAC3-209ENST00000486618 FGD1P98174 961 aa9.12□□□□□ -0.95
HDAC3-209ENST00000486618 TRIM32Q13049 653 aa9.12□□□□□ -0.95
HDAC3-209ENST00000486618 PKDCCQ504Y2 493 aa9.12□□□□□ -0.95
HDAC3-209ENST00000486618 CCDC24Q8N4L8 307 aa9.12□□□□□ -0.95
HDAC3-209ENST00000486618 RGS22Q8NE09 1264 aa9.12□□□□□ -0.95
HDAC3-209ENST00000486618 CCDC88AQ3V6T2 1871 aa9.11□□□□□ -0.95
HDAC3-209ENST00000486618 RASSF7Q02833 373 aa9.11□□□□□ -0.95
HDAC3-209ENST00000486618 DIXDC1Q155Q3 683 aa9.11□□□□□ -0.95
HDAC3-209ENST00000486618 RSBN1LQ6PCB5 846 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-209ENST00000486618 TTLL6Q8N841 843 aa9.11□□□□□ -0.95
HDAC3-209ENST00000486618 NFATC2IPQ8NCF5 419 aa9.11□□□□□ -0.95
HDAC3-209ENST00000486618 FAM187AA6NFU0 413 aa9.1□□□□□ -0.95
HDAC3-209ENST00000486618 TNNT2P45379 298 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-209ENST00000486618 MTMR2Q13614 643 aa9.1□□□□□ -0.95
HDAC3-209ENST00000486618 NEUROD2Q15784 382 aa9.1□□□□□ -0.95
HDAC3-209ENST00000486618 USPL1Q5W0Q7 1092 aa9.1□□□□□ -0.95
HDAC3-209ENST00000486618 INTS5Q6P9B9 1019 aaKnown RBP9.1□□□□□ -0.95
HDAC3-209ENST00000486618 TICAM2Q86XR7 235 aa9.1□□□□□ -0.95
HDAC3-209ENST00000486618 KDM6AO15550 1401 aaPredicted RBP9.1□□□□□ -0.95
HDAC3-209ENST00000486618 H0YIN7 160 aa9.09□□□□□ -0.95
HDAC3-209ENST00000486618 DGAT1O75907 488 aa9.09□□□□□ -0.95
HDAC3-209ENST00000486618 GJA5P36382 358 aa9.09□□□□□ -0.95
HDAC3-209ENST00000486618 NUDT12Q9BQG2 462 aa9.09□□□□□ -0.95
HDAC3-209ENST00000486618 NARFQ9UHQ1 456 aa9.09□□□□□ -0.95
HDAC3-209ENST00000486618 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.09□□□□□ -0.95
HDAC3-209ENST00000486618 AFDNP55196 1824 aaKnown RBP9.08□□□□□ -0.96
HDAC3-209ENST00000486618 SERPINB2P05120 415 aa9.08□□□□□ -0.96
HDAC3-209ENST00000486618 RBM25P49756 843 aaKnown RBP9.08□□□□□ -0.96
HDAC3-209ENST00000486618 NFIXQ14938 502 aa9.08□□□□□ -0.96
HDAC3-209ENST00000486618 C2CD5Q86YS7 1000 aa9.08□□□□□ -0.96
HDAC3-209ENST00000486618 PRR7Q8TB68 274 aa9.08□□□□□ -0.96
HDAC3-209ENST00000486618 PSMD1Q99460 953 aa9.08□□□□□ -0.96
HDAC3-209ENST00000486618 C1orf115Q9H7X2 142 aa9.08□□□□□ -0.96
HDAC3-209ENST00000486618 PCDHB15Q9Y5E8 787 aa9.08□□□□□ -0.96
HDAC3-209ENST00000486618 SOS1Q07889 1333 aaPredicted RBP9.07□□□□□ -0.96
HDAC3-209ENST00000486618 SPTLC1O15269 473 aa9.07□□□□□ -0.96
HDAC3-209ENST00000486618 DNAJC10Q8IXB1 793 aa9.07□□□□□ -0.96
HDAC3-209ENST00000486618 TOR4AQ9NXH8 423 aa9.07□□□□□ -0.96
HDAC3-209ENST00000486618 DLEC1Q9Y238 1755 aa9.07□□□□□ -0.96
HDAC3-209ENST00000486618 TJP1Q07157 1748 aa9.06□□□□□ -0.96
HDAC3-209ENST00000486618 DICER1Q9UPY3 1922 aaKnown RBP9.06□□□□□ -0.96
HDAC3-209ENST00000486618 SPDYE5A6NIY4 337 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms