RNA–Protein interactions for RNA: ENST00000486037.1

SND1-213, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 3

Gene SND1, Length 695 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-213ENST00000486037 RPS12P25398 132 aaKnown RBP13.04□□□□□ -0.32
SND1-213ENST00000486037 CAP1Q01518 475 aa13.04□□□□□ -0.32
SND1-213ENST00000486037 GRAPQ13588 217 aa13.04□□□□□ -0.32
SND1-213ENST00000486037 SCARF1Q14162 830 aa13.04□□□□□ -0.32
SND1-213ENST00000486037 OTOP1Q7RTM1 612 aa13.04□□□□□ -0.32
SND1-213ENST00000486037 PPP1R42Q7Z4L9 355 aa13.04□□□□□ -0.32
SND1-213ENST00000486037 GRAPLQ8TC17 118 aaPredicted RBP13.04□□□□□ -0.32
SND1-213ENST00000486037 ZNF428Q96B54 188 aa13.04□□□□□ -0.32
SND1-213ENST00000486037 OTUD5Q96G74 571 aa13.04□□□□□ -0.32
SND1-213ENST00000486037 POLLQ9UGP5 575 aa13.04□□□□□ -0.32
SND1-213ENST00000486037 TRIM17Q9Y577 477 aa13.04□□□□□ -0.32
SND1-213ENST00000486037 WASHC4Q2M389 1173 aa13.03□□□□□ -0.32
SND1-213ENST00000486037 UTP14AQ9BVJ6 771 aaKnown RBP13.03□□□□□ -0.32
SND1-213ENST00000486037 FKBP1BP68106 108 aa13.02□□□□□ -0.33
SND1-213ENST00000486037 PARP10Q53GL7 1025 aa13.02□□□□□ -0.33
SND1-213ENST00000486037 LRP10Q7Z4F1 713 aa13.02□□□□□ -0.33
SND1-213ENST00000486037 SLC17A8Q8NDX2 589 aa13.02□□□□□ -0.33
SND1-213ENST00000486037 THUMPD2Q9BTF0 503 aaKnown RBP13.02□□□□□ -0.33
SND1-213ENST00000486037 CFHR5Q9BXR6 569 aa13.02□□□□□ -0.33
SND1-213ENST00000486037 CUL9Q8IWT3 2517 aa13.02□□□□□ -0.33
SND1-213ENST00000486037 H0YGN5 161 aa13.01□□□□□ -0.33
SND1-213ENST00000486037 VIL1P09327 827 aaKnown RBP13.01□□□□□ -0.33
SND1-213ENST00000486037 GPSM2P81274 684 aa13.01□□□□□ -0.33
SND1-213ENST00000486037 CNGB1Q14028 1251 aaPredicted RBP13.01□□□□□ -0.33
SND1-213ENST00000486037 INTS3Q68E01 1043 aaKnown RBP13.01□□□□□ -0.33
SND1-213ENST00000486037 DDX46Q7L014 1031 aaKnown RBP13.01□□□□□ -0.33
SND1-213ENST00000486037 CELF1Q92879 486 aaKnown RBP13.01□□□□□ -0.33
SND1-213ENST00000486037 KDM3BQ7LBC6 1761 aa13.01□□□□□ -0.33
SND1-213ENST00000486037 PER1O15534 1290 aaPredicted RBP13□□□□□ -0.33
SND1-213ENST00000486037 ZNF280AP59817 542 aaPredicted RBP13□□□□□ -0.33
SND1-213ENST00000486037 TAF7Q15545 349 aaPredicted RBP13□□□□□ -0.33
SND1-213ENST00000486037 RTF1Q92541 710 aaKnown RBP13□□□□□ -0.33
SND1-213ENST00000486037 NSFL1CQ9UNZ2 370 aaKnown RBP13□□□□□ -0.33
SND1-213ENST00000486037 DDX60Q8IY21 1712 aaKnown RBP12.99□□□□□ -0.33
SND1-213ENST00000486037 UNC80Q8N2C7 3258 aa12.99□□□□□ -0.33
SND1-213ENST00000486037 C6orf229H3BNL8 230 aa12.99□□□□□ -0.33
SND1-213ENST00000486037 ANXA1P04083 346 aa12.99□□□□□ -0.33
SND1-213ENST00000486037 EIF4A1P60842 406 aaKnown RBP12.99□□□□□ -0.33
SND1-213ENST00000486037 PTPN12Q05209 780 aaKnown RBP12.99□□□□□ -0.33
SND1-213ENST00000486037 PROSER3Q2NL68 480 aa12.99□□□□□ -0.33
SND1-213ENST00000486037 CHRDL2Q6WN34 429 aa12.99□□□□□ -0.33
SND1-213ENST00000486037 MIER1Q8N108 512 aa12.99□□□□□ -0.33
SND1-213ENST00000486037 ARMC5Q96C12 935 aa12.99□□□□□ -0.33
SND1-213ENST00000486037 PTPN22Q9Y2R2 807 aa12.99□□□□□ -0.33
SND1-213ENST00000486037 PDIA6Q15084 440 aa12.98□□□□□ -0.33
SND1-213ENST00000486037 NLRP10Q86W26 655 aa12.98□□□□□ -0.33
SND1-213ENST00000486037 CD99L2Q8TCZ2 262 aa12.98□□□□□ -0.33
SND1-213ENST00000486037 FZD1Q9UP38 647 aa12.98□□□□□ -0.33
SND1-213ENST00000486037 ZNF609O15014 1411 aa12.97□□□□□ -0.33
SND1-213ENST00000486037 SREBF2Q12772 1141 aa12.97□□□□□ -0.33
SND1-213ENST00000486037 PRKG1Q13976 671 aa12.97□□□□□ -0.33
SND1-213ENST00000486037 TTLL12Q14166 644 aaPredicted RBP12.97□□□□□ -0.33
SND1-213ENST00000486037 TBC1D16Q8TBP0 767 aa12.97□□□□□ -0.33
SND1-213ENST00000486037 GMLQ99445 158 aa12.97□□□□□ -0.33
SND1-213ENST00000486037 RBM27Q9P2N5 1060 aaKnown RBP12.97□□□□□ -0.33
SND1-213ENST00000486037 PITPNM2Q9BZ72 1349 aa12.96□□□□□ -0.33
SND1-213ENST00000486037 IGF2BP3O00425 579 aaKnown RBP eCLIP12.96□□□□□ -0.33
SND1-213ENST00000486037 NBPF9Q3BBW0 867 aa12.96□□□□□ -0.33
SND1-213ENST00000486037 RSBN1LQ6PCB5 846 aaPredicted RBP12.96□□□□□ -0.33
SND1-213ENST00000486037 MYOZ2Q9NPC6 264 aa12.96□□□□□ -0.33
SND1-213ENST00000486037 SPRYD7Q5W111 196 aa12.95□□□□□ -0.34
SND1-213ENST00000486037 IFNL1Q8IU54 200 aa12.95□□□□□ -0.34
SND1-213ENST00000486037 ZNF333Q96JL9 665 aa12.95□□□□□ -0.34
SND1-213ENST00000486037 TRMT112Q9UI30 125 aaKnown RBP12.95□□□□□ -0.34
SND1-213ENST00000486037 PSME4Q14997 1843 aa12.95□□□□□ -0.34
SND1-213ENST00000486037 TMC4Q7Z404 712 aa12.94□□□□□ -0.34
SND1-213ENST00000486037 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.94□□□□□ -0.34
SND1-213ENST00000486037 VCANP13611 3396 aa12.94□□□□□ -0.34
SND1-213ENST00000486037 SH3TC1Q8TE82 1336 aa12.93□□□□□ -0.34
SND1-213ENST00000486037 HTATSF1O43719 755 aaKnown RBP12.93□□□□□ -0.34
SND1-213ENST00000486037 MYCP01106 439 aaPredicted RBP12.93□□□□□ -0.34
SND1-213ENST00000486037 AGBL3Q8NEM8 1001 aa12.93□□□□□ -0.34
SND1-213ENST00000486037 EYA3Q99504 573 aa12.93□□□□□ -0.34
SND1-213ENST00000486037 MXD3Q9BW11 206 aa12.93□□□□□ -0.34
SND1-213ENST00000486037 DLG5Q8TDM6 1919 aa12.92□□□□□ -0.34
SND1-213ENST00000486037 USP17L8P0C7I0 530 aa12.92□□□□□ -0.34
SND1-213ENST00000486037 U2AF1L5P0DN76 240 aaPredicted RBP12.92□□□□□ -0.34
SND1-213ENST00000486037 U2AF1Q01081 240 aaKnown RBP eCLIP12.92□□□□□ -0.34
SND1-213ENST00000486037 LDLRAD1Q5T700 205 aa12.92□□□□□ -0.34
SND1-213ENST00000486037 PRO3102Q9H379 93 aa12.92□□□□□ -0.34
SND1-213ENST00000486037 EFCC1Q9HA90 598 aa12.92□□□□□ -0.34
SND1-213ENST00000486037 ERBB4Q15303 1308 aa12.91□□□□□ -0.34
SND1-213ENST00000486037 ZNF646O15015 1829 aaPredicted RBP12.91□□□□□ -0.34
SND1-213ENST00000486037 SOX1O00570 391 aaPredicted RBP12.91□□□□□ -0.34
SND1-213ENST00000486037 UFL1O94874 794 aa12.91□□□□□ -0.34
SND1-213ENST00000486037 ALDH1A1P00352 501 aa12.91□□□□□ -0.34
SND1-213ENST00000486037 EIF2S2P20042 333 aaKnown RBP12.91□□□□□ -0.34
SND1-213ENST00000486037 AIMP1Q12904 312 aaKnown RBP12.91□□□□□ -0.34
SND1-213ENST00000486037 CRHR2Q13324 411 aa12.91□□□□□ -0.34
SND1-213ENST00000486037 TCIRG1Q13488 830 aa12.91□□□□□ -0.34
SND1-213ENST00000486037 ERO1AQ96HE7 468 aa12.91□□□□□ -0.34
SND1-213ENST00000486037 CLMNQ96JQ2 1002 aa12.91□□□□□ -0.34
SND1-213ENST00000486037 TMEM106CQ9BVX2 250 aa12.91□□□□□ -0.34
SND1-213ENST00000486037 ZC3H12CQ9C0D7 883 aaKnown RBP12.91□□□□□ -0.34
SND1-213ENST00000486037 PTCH2Q9Y6C5 1203 aa12.91□□□□□ -0.34
SND1-213ENST00000486037 WTIPA6NIX2 430 aaPredicted RBP12.9□□□□□ -0.34
SND1-213ENST00000486037 WNT10BO00744 389 aa12.9□□□□□ -0.34
SND1-213ENST00000486037 ANP32CO43423 234 aa12.9□□□□□ -0.34
SND1-213ENST00000486037 SASH1O94885 1247 aa12.9□□□□□ -0.34
SND1-213ENST00000486037 SF3B3Q15393 1217 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms