RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 HDLBPQ00341 1268 aaKnown RBP6.7□□□□□ -1.34
CCDC39-205ENST00000485055 JAZF1Q86VZ6 243 aa6.7□□□□□ -1.34
CCDC39-205ENST00000485055 IPO4Q8TEX9 1081 aaKnown RBP6.7□□□□□ -1.34
CCDC39-205ENST00000485055 STAG1Q8WVM7 1258 aa6.7□□□□□ -1.34
CCDC39-205ENST00000485055 BCL2L12Q9HB09 334 aa6.7□□□□□ -1.34
CCDC39-205ENST00000485055 DPYSL4O14531 572 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 HOXA2O43364 376 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 HOXB7P09629 217 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 ARID4AP29374 1257 aaPredicted RBP6.69□□□□□ -1.34
CCDC39-205ENST00000485055 MFSD10Q14728 455 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 RPUSD2Q8IZ73 545 aaKnown RBP6.69□□□□□ -1.34
CCDC39-205ENST00000485055 SYTL4Q96C24 671 aaPredicted RBP6.69□□□□□ -1.34
CCDC39-205ENST00000485055 FAM212AQ96EL1 285 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 PRKAG2Q9UGJ0 569 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 LTBP1Q14766 1721 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 CCDC88AQ3V6T2 1871 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 ERVV-1B6SEH8 477 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 GNPATO15228 680 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 STARD3NLO95772 234 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 YBX3P16989 372 aaKnown RBP eCLIP6.69□□□□□ -1.34
CCDC39-205ENST00000485055 YY1P25490 414 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 C4orf46Q504U0 113 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 FMNL2Q96PY5 1086 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 NOP58Q9Y2X3 529 aaKnown RBP6.69□□□□□ -1.34
CCDC39-205ENST00000485055 PSME4Q14997 1843 aa6.69□□□□□ -1.34
CCDC39-205ENST00000485055 BDNFP23560 247 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 TBX4P57082 545 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 RHBDL3P58872 404 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 MYBBP1AQ9BQG0 1328 aaKnown RBP6.68□□□□□ -1.34
CCDC39-205ENST00000485055 DUOX1Q9NRD9 1551 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 VAMP1P23763 118 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 RAD51AP2Q09MP3 1159 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 PDAP1Q13442 181 aaKnown RBP6.68□□□□□ -1.34
CCDC39-205ENST00000485055 NFE2L2Q16236 605 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 PLEKHG6Q3KR16 790 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 CCDC184Q52MB2 194 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 NLGN2Q8NFZ4 835 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 IRF2BPLQ9H1B7 796 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 ZSWIM4Q9H7M6 989 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 CARMIL3Q8ND23 1372 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 THSD7BQ9C0I4 1608 aa6.68□□□□□ -1.34
CCDC39-205ENST00000485055 GYS2P54840 703 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 LMOD3Q0VAK6 560 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 BMS1Q14692 1282 aaKnown RBP6.67□□□□□ -1.34
CCDC39-205ENST00000485055 TAF7Q15545 349 aaPredicted RBP6.67□□□□□ -1.34
CCDC39-205ENST00000485055 RASEFQ8IZ41 740 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 ZNF784Q8NCA9 323 aaPredicted RBP6.67□□□□□ -1.34
CCDC39-205ENST00000485055 STK32AQ8WU08 396 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 UCN2Q96RP3 112 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 RPS6KC1Q96S38 1066 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 ZNF609O15014 1411 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 LAMB1P07942 1786 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 RFC4P35249 363 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 DDR1Q08345 913 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 STYK1Q6J9G0 422 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 PHACTR3Q96KR7 559 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 BEGAINQ9BUH8 593 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 VPS33BQ9H267 617 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 TFIP11Q9UBB9 837 aaKnown RBP6.67□□□□□ -1.34
CCDC39-205ENST00000485055 PARP3Q9Y6F1 533 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 CAMTA2O94983 1202 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 SNRPA1P09661 255 aaKnown RBP6.67□□□□□ -1.34
CCDC39-205ENST00000485055 BIRC2Q13490 618 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 LRP10Q7Z4F1 713 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 DNAJC10Q8IXB1 793 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 FTSJ3Q8IY81 847 aaKnown RBP6.67□□□□□ -1.34
CCDC39-205ENST00000485055 COL4A3BPQ9Y5P4 624 aa6.67□□□□□ -1.34
CCDC39-205ENST00000485055 MRPL42Q9Y6G3 142 aaKnown RBP6.67□□□□□ -1.34
CCDC39-205ENST00000485055 ZNF646O15015 1829 aaPredicted RBP6.66□□□□□ -1.34
CCDC39-205ENST00000485055 EIF3JO75822 258 aaKnown RBP6.66□□□□□ -1.34
CCDC39-205ENST00000485055 MMP10P09238 476 aa6.66□□□□□ -1.34
CCDC39-205ENST00000485055 PRKAR2BP31323 418 aa6.66□□□□□ -1.34
CCDC39-205ENST00000485055 MYSM1Q5VVJ2 828 aa6.66□□□□□ -1.34
CCDC39-205ENST00000485055 FMNL3Q8IVF7 1028 aa6.66□□□□□ -1.34
CCDC39-205ENST00000485055 CRISPLD2Q9H0B8 497 aa6.66□□□□□ -1.34
CCDC39-205ENST00000485055 SOWAHDA6NJG2 315 aa6.66□□□□□ -1.34
CCDC39-205ENST00000485055 EPB41L2O43491 1005 aaKnown RBP6.66□□□□□ -1.34
CCDC39-205ENST00000485055 ATG7O95352 703 aa6.66□□□□□ -1.34
CCDC39-205ENST00000485055 CC2D1BQ5T0F9 858 aaKnown RBP6.66□□□□□ -1.34
CCDC39-205ENST00000485055 TMEM164Q5U3C3 297 aa6.66□□□□□ -1.34
CCDC39-205ENST00000485055 FBXO33Q7Z6M2 555 aa6.66□□□□□ -1.34
CCDC39-205ENST00000485055 NGEFQ8N5V2 710 aa6.66□□□□□ -1.34
CCDC39-205ENST00000485055 BRIP1Q9BX63 1249 aa6.66□□□□□ -1.34
CCDC39-205ENST00000485055 BIN2Q9UBW5 565 aaPredicted RBP6.66□□□□□ -1.34
CCDC39-205ENST00000485055 ZNF500O60304 480 aaPredicted RBP6.65□□□□□ -1.34
CCDC39-205ENST00000485055 IBSPP21815 317 aaPredicted RBP6.65□□□□□ -1.34
CCDC39-205ENST00000485055 SOGA3Q5TF21 947 aa6.65□□□□□ -1.34
CCDC39-205ENST00000485055 ZNF496Q96IT1 587 aaPredicted RBP6.65□□□□□ -1.34
CCDC39-205ENST00000485055 TINF2Q9BSI4 451 aa6.65□□□□□ -1.34
CCDC39-205ENST00000485055 SSUH2Q9Y2M2 353 aa6.65□□□□□ -1.34
CCDC39-205ENST00000485055 SLX4Q8IY92 1834 aa6.65□□□□□ -1.34
CCDC39-205ENST00000485055 ZNF853P0CG23 659 aa6.65□□□□□ -1.35
CCDC39-205ENST00000485055 TNNT2P45379 298 aaPredicted RBP6.65□□□□□ -1.35
CCDC39-205ENST00000485055 KCNQ4P56696 695 aa6.65□□□□□ -1.35
CCDC39-205ENST00000485055 EIF4A1P60842 406 aaKnown RBP6.64□□□□□ -1.35
CCDC39-205ENST00000485055 NFIXQ14938 502 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 SLC10A5Q5PT55 438 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 BANK1Q8NDB2 785 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 FBXO22Q8NEZ5 403 aa6.64□□□□□ -1.35
CCDC39-205ENST00000485055 CUEDC1Q9NWM3 386 aaPredicted RBP6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms