RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 TM4SF4P48230 202 aa10.15□□□□□ -0.78
USP54-213ENST00000481991 EIF4A1P60842 406 aaKnown RBP10.15□□□□□ -0.78
USP54-213ENST00000481991 FKBP1BP68106 108 aa10.15□□□□□ -0.78
USP54-213ENST00000481991 SREBF2Q12772 1141 aa10.15□□□□□ -0.78
USP54-213ENST00000481991 INTS3Q68E01 1043 aaKnown RBP10.15□□□□□ -0.78
USP54-213ENST00000481991 FBXW7Q969H0 707 aa10.15□□□□□ -0.78
USP54-213ENST00000481991 TMEM106CQ9BVX2 250 aa10.15□□□□□ -0.78
USP54-213ENST00000481991 R3HDMLQ9H3Y0 253 aa10.15□□□□□ -0.78
USP54-213ENST00000481991 ANKIB1Q9P2G1 1089 aa10.15□□□□□ -0.78
USP54-213ENST00000481991 RIC1Q4ADV7 1423 aa10.15□□□□□ -0.79
USP54-213ENST00000481991 VIL1P09327 827 aaKnown RBP10.14□□□□□ -0.79
USP54-213ENST00000481991 TMC4Q7Z404 712 aa10.14□□□□□ -0.79
USP54-213ENST00000481991 NLRP10Q86W26 655 aa10.14□□□□□ -0.79
USP54-213ENST00000481991 SH3TC1Q8TE82 1336 aa10.13□□□□□ -0.79
USP54-213ENST00000481991 PER1O15534 1290 aaPredicted RBP10.13□□□□□ -0.79
USP54-213ENST00000481991 USP17L8P0C7I0 530 aa10.13□□□□□ -0.79
USP54-213ENST00000481991 HSP90AB3PQ58FF7 597 aa10.13□□□□□ -0.79
USP54-213ENST00000481991 COPS6Q7L5N1 327 aa10.13□□□□□ -0.79
USP54-213ENST00000481991 ARMC9Q7Z3E5 817 aa10.13□□□□□ -0.79
USP54-213ENST00000481991 CELF1Q92879 486 aaKnown RBP10.13□□□□□ -0.79
USP54-213ENST00000481991 MYOZ2Q9NPC6 264 aa10.13□□□□□ -0.79
USP54-213ENST00000481991 IBTKQ9P2D0 1353 aaPredicted RBP10.13□□□□□ -0.79
USP54-213ENST00000481991 NUP98P52948 1817 aa10.12□□□□□ -0.79
USP54-213ENST00000481991 SIPA1L3O60292 1781 aaPredicted RBP10.12□□□□□ -0.79
USP54-213ENST00000481991 SLC4A8Q2Y0W8 1093 aa10.12□□□□□ -0.79
USP54-213ENST00000481991 RSBN1LQ6PCB5 846 aaPredicted RBP10.12□□□□□ -0.79
USP54-213ENST00000481991 OTOP1Q7RTM1 612 aa10.12□□□□□ -0.79
USP54-213ENST00000481991 TBC1D16Q8TBP0 767 aa10.12□□□□□ -0.79
USP54-213ENST00000481991 XAGE3Q8WTP9 111 aa10.12□□□□□ -0.79
USP54-213ENST00000481991 SLC10A4Q96EP9 437 aa10.12□□□□□ -0.79
USP54-213ENST00000481991 FAM89AQ96GI7 184 aa10.12□□□□□ -0.79
USP54-213ENST00000481991 TSPYL4Q9UJ04 414 aa10.12□□□□□ -0.79
USP54-213ENST00000481991 RTL9Q8NET4 1388 aa10.12□□□□□ -0.79
USP54-213ENST00000481991 UFL1O94874 794 aa10.11□□□□□ -0.79
USP54-213ENST00000481991 ALDH1A1P00352 501 aa10.11□□□□□ -0.79
USP54-213ENST00000481991 RPS8P62241 208 aaKnown RBP10.11□□□□□ -0.79
USP54-213ENST00000481991 PTPN12Q05209 780 aaKnown RBP10.11□□□□□ -0.79
USP54-213ENST00000481991 AGBL3Q8NEM8 1001 aa10.11□□□□□ -0.79
USP54-213ENST00000481991 CD99L2Q8TCZ2 262 aa10.11□□□□□ -0.79
USP54-213ENST00000481991 ATP5J2-PTCD1G3V325 749 aa10.1□□□□□ -0.79
USP54-213ENST00000481991 MAPK8IP2Q13387 824 aaPredicted RBP10.1□□□□□ -0.79
USP54-213ENST00000481991 PROSER3Q2NL68 480 aa10.1□□□□□ -0.79
USP54-213ENST00000481991 NBPF9Q3BBW0 867 aa10.1□□□□□ -0.79
USP54-213ENST00000481991 OGFOD1Q8N543 542 aa10.1□□□□□ -0.79
USP54-213ENST00000481991 DPF3Q92784 378 aa10.1□□□□□ -0.79
USP54-213ENST00000481991 EFCC1Q9HA90 598 aa10.1□□□□□ -0.79
USP54-213ENST00000481991 GGA1Q9UJY5 639 aa10.1□□□□□ -0.79
USP54-213ENST00000481991 ANGEL1Q9UNK9 670 aaKnown RBP10.1□□□□□ -0.79
USP54-213ENST00000481991 PTPN22Q9Y2R2 807 aa10.1□□□□□ -0.79
USP54-213ENST00000481991 USP17L3A6NCW0 530 aa10.09□□□□□ -0.79
USP54-213ENST00000481991 USP17L4A6NCW7 530 aa10.09□□□□□ -0.79
USP54-213ENST00000481991 H0YGN5 161 aa10.09□□□□□ -0.79
USP54-213ENST00000481991 ZNF280AP59817 542 aaPredicted RBP10.09□□□□□ -0.79
USP54-213ENST00000481991 PDIA6Q15084 440 aa10.09□□□□□ -0.79
USP54-213ENST00000481991 USP17L1Q7RTZ2 530 aa10.09□□□□□ -0.79
USP54-213ENST00000481991 NBPF11Q86T75 865 aa10.09□□□□□ -0.79
USP54-213ENST00000481991 ERO1AQ96HE7 468 aa10.09□□□□□ -0.79
USP54-213ENST00000481991 CCDC85AQ96PX6 553 aaPredicted RBP10.09□□□□□ -0.79
USP54-213ENST00000481991 FZD1Q9UP38 647 aa10.09□□□□□ -0.79
USP54-213ENST00000481991 MANSC4A6NHS7 340 aaPredicted RBP10.08□□□□□ -0.8
USP54-213ENST00000481991 INHBEP58166 350 aa10.08□□□□□ -0.8
USP54-213ENST00000481991 NOM1Q5C9Z4 860 aaKnown RBP10.08□□□□□ -0.8
USP54-213ENST00000481991 SPRYD7Q5W111 196 aa10.08□□□□□ -0.8
USP54-213ENST00000481991 OTUD7BQ6GQQ9 843 aa10.08□□□□□ -0.8
USP54-213ENST00000481991 CHRDL2Q6WN34 429 aa10.08□□□□□ -0.8
USP54-213ENST00000481991 IFNL1Q8IU54 200 aa10.08□□□□□ -0.8
USP54-213ENST00000481991 MXD3Q9BW11 206 aa10.08□□□□□ -0.8
USP54-213ENST00000481991 LAS1LQ9Y4W2 734 aaKnown RBP10.08□□□□□ -0.8
USP54-213ENST00000481991 ERBB4Q15303 1308 aa10.07□□□□□ -0.8
USP54-213ENST00000481991 IRS4O14654 1257 aaPredicted RBP10.07□□□□□ -0.8
USP54-213ENST00000481991 ECM2O94769 699 aaPredicted RBP10.07□□□□□ -0.8
USP54-213ENST00000481991 SF3B3Q15393 1217 aaKnown RBP10.07□□□□□ -0.8
USP54-213ENST00000481991 SEC31BQ9NQW1 1179 aa10.07□□□□□ -0.8
USP54-213ENST00000481991 PITPNM2Q9BZ72 1349 aa10.07□□□□□ -0.8
USP54-213ENST00000481991 TAF1P21675 1872 aa10.06□□□□□ -0.8
USP54-213ENST00000481991 COL3A1P02461 1466 aaPredicted RBP10.06□□□□□ -0.8
USP54-213ENST00000481991 SASH1O94885 1247 aa10.06□□□□□ -0.8
USP54-213ENST00000481991 SP3Q02447 781 aa10.06□□□□□ -0.8
USP54-213ENST00000481991 SLC9C1Q4G0N8 1177 aa10.06□□□□□ -0.8
USP54-213ENST00000481991 WNT10BO00744 389 aa10.05□□□□□ -0.8
USP54-213ENST00000481991 PPP2R1AP30153 589 aa10.05□□□□□ -0.8
USP54-213ENST00000481991 TRIM26Q12899 539 aaPredicted RBP10.05□□□□□ -0.8
USP54-213ENST00000481991 ARHGEF6Q15052 776 aa10.05□□□□□ -0.8
USP54-213ENST00000481991 NFE2L2Q16236 605 aa10.05□□□□□ -0.8
USP54-213ENST00000481991 ANKRD13DQ6ZTN6 518 aa10.05□□□□□ -0.8
USP54-213ENST00000481991 JARID2Q92833 1246 aaPredicted RBP10.05□□□□□ -0.8
USP54-213ENST00000481991 MAPK8IP3Q9UPT6 1336 aa10.05□□□□□ -0.8
USP54-213ENST00000481991 WTIPA6NIX2 430 aaPredicted RBP10.04□□□□□ -0.8
USP54-213ENST00000481991 IGF2BP3O00425 579 aaKnown RBP eCLIP10.04□□□□□ -0.8
USP54-213ENST00000481991 PPP1R12BO60237 982 aaPredicted RBP10.04□□□□□ -0.8
USP54-213ENST00000481991 ATP2B4P23634 1241 aa10.04□□□□□ -0.8
USP54-213ENST00000481991 CRHR2Q13324 411 aa10.04□□□□□ -0.8
USP54-213ENST00000481991 LRP10Q7Z4F1 713 aa10.04□□□□□ -0.8
USP54-213ENST00000481991 PODNQ7Z5L7 613 aa10.04□□□□□ -0.8
USP54-213ENST00000481991 ANKRD18AQ8IVF6 992 aa10.04□□□□□ -0.8
USP54-213ENST00000481991 CLMNQ96JQ2 1002 aa10.04□□□□□ -0.8
USP54-213ENST00000481991 GMLQ99445 158 aa10.04□□□□□ -0.8
USP54-213ENST00000481991 CFHR5Q9BXR6 569 aa10.04□□□□□ -0.8
USP54-213ENST00000481991 PNNQ9H307 717 aaKnown RBP10.04□□□□□ -0.8
USP54-213ENST00000481991 PODXL2Q9NZ53 605 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms