RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 DDB1Q16531 1140 aa15.55■□□□□ 0.08
SEC13-216ENST00000479868 NECAB1Q8N987 351 aa15.55■□□□□ 0.08
SEC13-216ENST00000479868 FBXO3Q9UK99 471 aa15.55■□□□□ 0.08
SEC13-216ENST00000479868 STX6O43752 255 aa15.55■□□□□ 0.08
SEC13-216ENST00000479868 GJB2P29033 226 aa15.55■□□□□ 0.08
SEC13-216ENST00000479868 ZSCAN23Q3MJ62 389 aa15.55■□□□□ 0.08
SEC13-216ENST00000479868 HSP90AB3PQ58FF7 597 aa15.55■□□□□ 0.08
SEC13-216ENST00000479868 TAF7LQ5H9L4 462 aa15.55■□□□□ 0.08
SEC13-216ENST00000479868 TTLL11Q8NHH1 800 aa15.55■□□□□ 0.08
SEC13-216ENST00000479868 RBM27Q9P2N5 1060 aaKnown RBP15.55■□□□□ 0.08
SEC13-216ENST00000479868 A0A0G2JS52 829 aa15.54■□□□□ 0.08
SEC13-216ENST00000479868 IL6STP40189 918 aaPredicted RBP15.54■□□□□ 0.08
SEC13-216ENST00000479868 DZIP3Q86Y13 1208 aaKnown RBP15.54■□□□□ 0.08
SEC13-216ENST00000479868 ACSBG1Q96GR2 724 aa15.54■□□□□ 0.08
SEC13-216ENST00000479868 XAGE2Q96GT9 111 aa15.54■□□□□ 0.08
SEC13-216ENST00000479868 CDCA7Q9BWT1 371 aaPredicted RBP15.54■□□□□ 0.08
SEC13-216ENST00000479868 GREM2Q9H772 168 aa15.54■□□□□ 0.08
SEC13-216ENST00000479868 TULP1O00294 542 aaPredicted RBP15.54■□□□□ 0.08
SEC13-216ENST00000479868 CYP21A2P08686 494 aa15.54■□□□□ 0.08
SEC13-216ENST00000479868 ZSCAN22P10073 491 aaPredicted RBP15.54■□□□□ 0.08
SEC13-216ENST00000479868 ITGA6P23229 1130 aa15.54■□□□□ 0.08
SEC13-216ENST00000479868 TOB2Q14106 344 aaPredicted RBP15.54■□□□□ 0.08
SEC13-216ENST00000479868 GDPD2Q9HCC8 539 aa15.54■□□□□ 0.08
SEC13-216ENST00000479868 THRAP3Q9Y2W1 955 aaKnown RBP15.54■□□□□ 0.08
SEC13-216ENST00000479868 U3KPZ7 1027 aaPredicted RBP15.54■□□□□ 0.08
SEC13-216ENST00000479868 SPEF2Q9C093 1822 aa15.53■□□□□ 0.08
SEC13-216ENST00000479868 UBN2Q6ZU65 1347 aa15.53■□□□□ 0.08
SEC13-216ENST00000479868 NUTM2BA6NNL0 878 aaPredicted RBP15.53■□□□□ 0.08
SEC13-216ENST00000479868 NUTM2EB1AL46 878 aaPredicted RBP15.53■□□□□ 0.08
SEC13-216ENST00000479868 CTSWP56202 376 aa15.53■□□□□ 0.08
SEC13-216ENST00000479868 NUTM2AQ8IVF1 878 aaPredicted RBP15.53■□□□□ 0.08
SEC13-216ENST00000479868 MARCH10Q8NA82 808 aaPredicted RBP15.53■□□□□ 0.08
SEC13-216ENST00000479868 HELLSQ9NRZ9 838 aa15.53■□□□□ 0.08
SEC13-216ENST00000479868 TRMT112Q9UI30 125 aaKnown RBP15.53■□□□□ 0.08
SEC13-216ENST00000479868 AKAP2Q9Y2D5 859 aa15.53■□□□□ 0.08
SEC13-216ENST00000479868 RIC1Q4ADV7 1423 aa15.53■□□□□ 0.08
SEC13-216ENST00000479868 IRS4O14654 1257 aaPredicted RBP15.53■□□□□ 0.08
SEC13-216ENST00000479868 ZNF445P59923 1031 aa15.53■□□□□ 0.08
SEC13-216ENST00000479868 ZMYM1Q5SVZ6 1142 aa15.53■□□□□ 0.08
SEC13-216ENST00000479868 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.53■□□□□ 0.08
SEC13-216ENST00000479868 ALDH8A1Q9H2A2 487 aaPredicted RBP15.53■□□□□ 0.08
SEC13-216ENST00000479868 TMEM63CQ9P1W3 806 aa15.53■□□□□ 0.08
SEC13-216ENST00000479868 ERVV-1B6SEH8 477 aa15.52■□□□□ 0.08
SEC13-216ENST00000479868 FKBP4Q02790 459 aaKnown RBP eCLIP15.52■□□□□ 0.08
SEC13-216ENST00000479868 KRT32Q14532 448 aa15.52■□□□□ 0.08
SEC13-216ENST00000479868 CCDC158Q5M9N0 1113 aa15.52■□□□□ 0.08
SEC13-216ENST00000479868 RIPOR2Q9Y4F9 1068 aa15.52■□□□□ 0.08
SEC13-216ENST00000479868 SLIT2O94813 1529 aa15.52■□□□□ 0.07
SEC13-216ENST00000479868 ANKRD1Q15327 319 aa15.51■□□□□ 0.07
SEC13-216ENST00000479868 TTC39AQ5SRH9 613 aa15.51■□□□□ 0.07
SEC13-216ENST00000479868 GORABQ5T7V8 394 aa15.51■□□□□ 0.07
SEC13-216ENST00000479868 NEK1Q96PY6 1258 aa15.51■□□□□ 0.07
SEC13-216ENST00000479868 RNF113AO15541 343 aaKnown RBP15.51■□□□□ 0.07
SEC13-216ENST00000479868 F13A1P00488 732 aa15.51■□□□□ 0.07
SEC13-216ENST00000479868 SCARF1Q14162 830 aa15.51■□□□□ 0.07
SEC13-216ENST00000479868 INTS5Q6P9B9 1019 aaKnown RBP15.51■□□□□ 0.07
SEC13-216ENST00000479868 LDHAL6AQ6ZMR3 332 aa15.51■□□□□ 0.07
SEC13-216ENST00000479868 MAST3O60307 1309 aa15.51■□□□□ 0.07
SEC13-216ENST00000479868 SPATA31A5Q5VU36 1347 aa15.51■□□□□ 0.07
SEC13-216ENST00000479868 SPATA31A7Q8IWB4 1347 aa15.51■□□□□ 0.07
SEC13-216ENST00000479868 LAMA4Q16363 1823 aa15.5■□□□□ 0.07
SEC13-216ENST00000479868 EIF5P55010 431 aaKnown RBP15.5■□□□□ 0.07
SEC13-216ENST00000479868 USP48Q86UV5 1035 aa15.5■□□□□ 0.07
SEC13-216ENST00000479868 TICAM2Q86XR7 235 aa15.5■□□□□ 0.07
SEC13-216ENST00000479868 ZNF34Q8IZ26 560 aa15.5■□□□□ 0.07
SEC13-216ENST00000479868 ANKRD18BA2A2Z9 1011 aa15.5■□□□□ 0.07
SEC13-216ENST00000479868 GADD45BO75293 160 aaPredicted RBP15.5■□□□□ 0.07
SEC13-216ENST00000479868 MBD3O95983 291 aa15.5■□□□□ 0.07
SEC13-216ENST00000479868 ATP6V1AP38606 617 aa15.5■□□□□ 0.07
SEC13-216ENST00000479868 METTL24Q5JXM2 366 aa15.5■□□□□ 0.07
SEC13-216ENST00000479868 STOX1Q6ZVD7 989 aa15.5■□□□□ 0.07
SEC13-216ENST00000479868 DSCC1Q9BVC3 393 aa15.5■□□□□ 0.07
SEC13-216ENST00000479868 MTMR6Q9Y217 621 aa15.5■□□□□ 0.07
SEC13-216ENST00000479868 M0R2C6 588 aa15.49■□□□□ 0.07
SEC13-216ENST00000479868 HSPD1P10809 573 aaKnown RBP15.49■□□□□ 0.07
SEC13-216ENST00000479868 CRKLP46109 303 aaKnown RBP15.49■□□□□ 0.07
SEC13-216ENST00000479868 ATP2B3Q16720 1220 aa15.49■□□□□ 0.07
SEC13-216ENST00000479868 PI16Q6UXB8 463 aa15.49■□□□□ 0.07
SEC13-216ENST00000479868 CCDC87Q9NVE4 849 aa15.49■□□□□ 0.07
SEC13-216ENST00000479868 CNPY2Q9Y2B0 182 aa15.49■□□□□ 0.07
SEC13-216ENST00000479868 MYH14Q7Z406 1995 aaKnown RBP15.49■□□□□ 0.07
SEC13-216ENST00000479868 LOC102724428A0A0B4J2F2 783 aa15.49■□□□□ 0.07
SEC13-216ENST00000479868 A0A0G2JLW4 131 aa15.49■□□□□ 0.07
SEC13-216ENST00000479868 PDE8AO60658 829 aa15.49■□□□□ 0.07
SEC13-216ENST00000479868 SIK1P57059 783 aa15.49■□□□□ 0.07
SEC13-216ENST00000479868 PIP4K2BP78356 416 aa15.49■□□□□ 0.07
SEC13-216ENST00000479868 STK3Q13188 491 aa15.49■□□□□ 0.07
SEC13-216ENST00000479868 OSBP2Q969R2 916 aa15.49■□□□□ 0.07
SEC13-216ENST00000479868 ZAP70P43403 619 aa15.48■□□□□ 0.07
SEC13-216ENST00000479868 ITPK1Q13572 414 aa15.48■□□□□ 0.07
SEC13-216ENST00000479868 VGLL2Q8N8G2 317 aa15.48■□□□□ 0.07
SEC13-216ENST00000479868 CNNM1Q9NRU3 951 aa15.48■□□□□ 0.07
SEC13-216ENST00000479868 NWD2Q9ULI1 1742 aa15.48■□□□□ 0.07
SEC13-216ENST00000479868 AKAP11Q9UKA4 1901 aa15.48■□□□□ 0.07
SEC13-216ENST00000479868 Q6ZUG5 572 aa15.48■□□□□ 0.07
SEC13-216ENST00000479868 TMEM87AQ8NBN3 555 aa15.47■□□□□ 0.07
SEC13-216ENST00000479868 LRRC2Q9BYS8 371 aa15.47■□□□□ 0.07
SEC13-216ENST00000479868 SYCE3A1L190 88 aa15.47■□□□□ 0.07
SEC13-216ENST00000479868 VPS37CA5D8V6 355 aaPredicted RBP15.47■□□□□ 0.07
SEC13-216ENST00000479868 SUSD4Q5VX71 490 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms